Wall clock time and date at job start Wed Apr 1 2020 04:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.47439 * 2 1 4 4 C 1.46492 * 120.00339 * 264.99928 * 3 2 1 5 5 C 1.50700 * 109.46958 * 263.14487 * 4 3 2 6 6 H 1.08005 * 120.00111 * 359.97438 * 5 4 3 7 7 C 1.37885 * 120.00076 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99772 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 119.99870 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47378 * 89.99889 * 9 7 5 11 11 H 1.48501 * 109.47133 * 209.99663 * 9 7 5 12 12 H 1.48502 * 109.47556 * 329.99674 * 9 7 5 13 13 C 1.34775 * 119.99431 * 84.99294 * 3 2 1 14 14 O 1.21359 * 120.00235 * 4.03531 * 13 3 2 15 15 C 1.49343 * 119.99815 * 184.03346 * 13 3 2 16 16 O 1.21380 * 119.99994 * 354.70372 * 15 13 3 17 17 N 1.34781 * 119.99803 * 174.69673 * 15 13 3 18 18 C 1.39602 * 119.99909 * 179.97438 * 17 15 13 19 19 N 1.31002 * 126.06410 * 0.02562 * 18 17 15 20 20 N 1.39918 * 108.84618 * 179.97438 * 19 18 17 21 21 C 1.46504 * 125.69395 * 179.97438 * 20 19 18 22 22 C 1.52996 * 109.47354 * 255.00419 * 21 20 19 23 23 C 1.53007 * 109.46791 * 15.00370 * 21 20 19 24 24 C 1.53000 * 109.47068 * 135.00142 * 21 20 19 25 25 C 1.34383 * 108.61849 * 0.02562 * 20 19 18 26 26 C 1.38009 * 107.53683 * 359.97438 * 25 20 19 27 27 C 1.43199 * 126.43808 * 179.97438 * 26 25 20 28 28 N 8.26265 * 96.68963 * 45.57731 * 2 1 3 29 29 H 1.08999 * 109.46717 * 59.99844 * 1 2 3 30 30 H 1.08992 * 109.47053 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47108 * 299.99920 * 1 2 3 32 32 H 1.09002 * 109.47132 * 240.00687 * 2 1 3 33 33 H 1.09000 * 109.47352 * 120.00563 * 2 1 3 34 34 H 1.09002 * 109.47387 * 23.14142 * 4 3 2 35 35 H 1.08999 * 109.47260 * 143.14468 * 4 3 2 36 36 H 0.96995 * 119.99935 * 179.97438 * 8 7 5 37 37 H 0.96996 * 120.00064 * 0.02562 * 17 15 13 38 38 H 1.09004 * 109.47010 * 59.99646 * 22 21 20 39 39 H 1.08998 * 109.47367 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.47037 * 299.99826 * 22 21 20 41 41 H 1.08994 * 109.46835 * 59.99730 * 23 21 20 42 42 H 1.08998 * 109.46708 * 179.97438 * 23 21 20 43 43 H 1.08998 * 109.46699 * 300.00172 * 23 21 20 44 44 H 1.09000 * 109.47107 * 60.00306 * 24 21 20 45 45 H 1.09001 * 109.46730 * 180.02562 * 24 21 20 46 46 H 1.09004 * 109.47001 * 300.00185 * 24 21 20 47 47 H 1.07998 * 126.23074 * 180.25912 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3669 2.0350 -1.2638 5 6 3.8533 1.9316 -1.4897 6 1 4.4761 1.4295 -0.7641 7 6 4.4183 2.4789 -2.6221 8 7 3.6599 3.0908 -3.5053 9 14 6.2607 2.3513 -2.9017 10 1 6.5623 1.1070 -3.6540 11 1 6.7256 3.5263 -3.6818 12 1 6.9592 2.3193 -1.5916 13 6 2.1470 2.0504 1.1628 14 8 1.9285 1.4864 2.2149 15 6 2.5584 3.4861 1.1566 16 8 2.8698 4.0236 0.1138 17 7 2.5836 4.1848 2.3088 18 6 2.9687 5.5267 2.3031 19 7 3.3267 6.2218 1.2520 20 7 3.6379 7.5246 1.6562 21 6 4.0818 8.6094 0.7772 22 6 5.5828 8.8372 0.9663 23 6 3.8026 8.2321 -0.6791 24 6 3.3233 9.8914 1.1263 25 6 3.4629 7.6147 2.9856 26 6 3.0415 6.3795 3.4342 27 6 2.7360 6.0249 4.7875 28 7 2.4925 5.7440 5.8610 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.8400 1.5461 -2.0832 35 1 2.0780 3.0852 -1.2214 36 1 4.0574 3.4762 -4.3018 37 1 2.3350 3.7552 3.1421 38 1 6.1232 7.9238 0.7176 39 1 5.9130 9.6445 0.3126 40 1 5.7817 9.1059 2.0038 41 1 2.7333 8.0698 -0.8138 42 1 4.1325 9.0394 -1.3331 43 1 4.3429 7.3187 -0.9277 44 1 3.5222 10.1601 2.1638 45 1 3.6533 10.6983 0.4720 46 1 2.2539 9.7291 0.9916 47 1 3.6187 8.4949 3.5917 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124059797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:32 Heat of formation + Delta-G solvation = 59.066039 kcal Electronic energy + Delta-G solvation = -31333.164531 eV Core-core repulsion = 27133.338703 eV Total energy + Delta-G solvation = -4199.825828 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.68327 -40.09165 -38.10269 -37.09978 -36.15292 -35.67465 -34.10193 -32.65138 -30.63565 -30.47518 -29.96286 -27.75558 -27.46723 -27.04735 -25.24525 -23.48594 -22.98005 -22.55956 -20.75425 -20.26978 -18.82285 -18.29104 -17.02271 -16.68967 -16.44539 -16.12493 -15.80652 -15.57616 -15.12550 -14.82934 -14.29941 -14.24097 -14.12033 -13.91041 -13.72767 -13.42747 -13.15939 -13.10814 -12.95936 -12.71873 -12.60700 -12.40001 -12.33556 -12.14143 -12.02044 -11.96250 -11.71057 -11.62845 -11.45423 -11.33609 -10.94461 -10.88815 -10.70338 -10.62720 -10.47198 -10.39043 -9.94489 -9.65923 -8.92525 -8.75982 -8.33617 -8.24566 -7.81890 -6.01547 -4.03940 1.37681 1.82816 2.00130 2.55007 2.69082 2.81843 3.30772 3.36817 3.41842 3.54861 3.87996 3.96010 4.16659 4.31949 4.43616 4.46713 4.48872 4.61006 4.89830 5.08167 5.12682 5.23131 5.29931 5.35064 5.36380 5.45571 5.53126 5.57420 5.65472 5.69616 5.74824 5.77302 5.79859 5.95834 6.16905 6.28209 6.35089 6.55006 6.65760 6.70400 6.75946 7.08086 7.40783 7.43602 7.60993 7.81445 7.87563 8.11310 8.20878 8.36139 8.65688 8.97613 9.58993 11.07162 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008335 B = 0.004466 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.389844 B = 6267.400731 C = 8670.080783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.111 3.889 3 N -0.557 5.557 4 C 0.220 3.780 5 C -0.519 4.519 6 H 0.053 0.947 7 C 0.072 3.928 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.511 3.489 14 O -0.559 6.559 15 C 0.484 3.516 16 O -0.398 6.398 17 N -0.627 5.627 18 C 0.348 3.652 19 N -0.256 5.256 20 N -0.338 5.338 21 C 0.180 3.820 22 C -0.162 4.162 23 C -0.147 4.147 24 C -0.161 4.161 25 C 0.134 3.866 26 C -0.213 4.213 27 C 0.294 3.706 28 N -0.438 5.438 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.032 0.968 35 H 0.076 0.924 36 H 0.261 0.739 37 H 0.425 0.575 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.265 12.941 7.659 15.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 N -0.287 5.287 4 C 0.102 3.898 5 C -0.558 4.558 6 H 0.072 0.928 7 C -0.131 4.131 8 N -0.526 5.526 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.293 3.707 14 O -0.441 6.441 15 C 0.264 3.736 16 O -0.260 6.260 17 N -0.282 5.282 18 C 0.087 3.913 19 N -0.084 5.084 20 N -0.117 5.117 21 C 0.098 3.902 22 C -0.220 4.220 23 C -0.204 4.204 24 C -0.219 4.219 25 C -0.022 4.022 26 C -0.231 4.231 27 C -0.021 4.021 28 N -0.115 5.115 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.263 0.737 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.103 0.897 46 H 0.089 0.911 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.300 12.675 7.349 14.709 hybrid contribution 1.008 -0.143 0.616 1.190 sum -0.292 12.532 7.965 14.852 Atomic orbital electron populations 1.22117 0.96275 1.01672 1.02219 1.21439 0.93775 0.82792 1.03136 1.48306 1.58990 1.13028 1.08376 1.20140 0.96405 0.95464 0.77839 1.21224 0.92087 1.36493 1.05993 0.92828 1.24776 0.97729 0.94753 0.95815 1.69918 1.35112 1.36806 1.10782 0.86597 0.85814 0.77428 0.78125 1.20785 1.21165 1.20083 1.19552 0.79741 0.86708 0.84677 1.90665 1.52893 1.69483 1.31028 1.20604 0.80839 0.88510 0.83639 1.91018 1.37625 1.69174 1.28179 1.42776 1.66727 1.06198 1.12450 1.19107 0.96090 0.85734 0.90348 1.78215 1.24489 0.88085 1.17588 1.48796 1.48717 1.09252 1.04899 1.20932 0.94868 0.83173 0.91205 1.22301 0.93188 1.03696 1.02783 1.21945 1.04076 1.03297 0.91115 1.22293 1.01326 0.95577 1.02707 1.22654 0.95972 0.97616 0.85949 1.15654 1.25885 0.94813 0.86768 1.24438 0.92402 0.93896 0.91357 1.81270 1.11812 1.07223 1.11223 0.92338 0.91964 0.92622 0.89645 0.90753 0.94981 0.90649 0.92912 0.73660 0.90963 0.90086 0.91815 0.91201 0.90984 0.89865 0.91603 0.89737 0.91116 0.79600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 10.20 37.16 0.38 -2.10 16 2 C 0.11 1.98 6.08 -4.04 -0.02 1.96 16 3 N -0.56 -11.91 2.49 -175.61 -0.44 -12.35 16 4 C 0.22 5.45 4.75 -5.20 -0.02 5.42 16 5 C -0.52 -14.14 8.36 -34.44 -0.29 -14.43 16 6 H 0.05 1.49 7.81 -52.48 -0.41 1.08 16 7 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 8 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 9 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 C 0.51 10.83 7.63 -11.64 -0.09 10.74 16 14 O -0.56 -11.84 16.12 5.49 0.09 -11.75 16 15 C 0.48 10.06 7.73 -11.63 -0.09 9.97 16 16 O -0.40 -9.49 11.11 5.47 0.06 -9.43 16 17 N -0.63 -10.88 5.42 -11.37 -0.06 -10.94 16 18 C 0.35 5.62 7.80 -154.56 -1.21 4.41 16 19 N -0.26 -4.32 9.78 31.59 0.31 -4.01 16 20 N -0.34 -4.05 3.41 -48.08 -0.16 -4.21 16 21 C 0.18 1.65 1.23 -131.81 -0.16 1.49 16 22 C -0.16 -1.24 8.72 37.16 0.32 -0.92 16 23 C -0.15 -1.67 8.07 37.16 0.30 -1.37 16 24 C -0.16 -0.95 8.28 37.16 0.31 -0.64 16 25 C 0.13 1.32 10.56 -16.52 -0.17 1.14 16 26 C -0.21 -2.72 5.98 -106.68 -0.64 -3.36 16 27 C 0.29 3.94 15.62 -22.47 -0.35 3.59 16 28 N -0.44 -6.58 18.54 41.84 0.78 -5.81 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.48 8.03 -51.93 -0.42 1.06 16 33 H 0.07 1.30 7.52 -51.93 -0.39 0.91 16 34 H 0.03 0.82 8.02 -51.93 -0.42 0.40 16 35 H 0.08 2.03 5.37 -51.93 -0.28 1.75 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.43 6.66 8.09 -40.82 -0.33 6.33 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 1.25 8.03 -51.93 -0.42 0.83 16 44 H 0.06 0.28 7.33 -51.93 -0.38 -0.11 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.19 0.97 7.52 -52.49 -0.39 0.57 16 LS Contribution 404.94 15.07 6.10 6.10 Total: -1.00 -33.62 404.94 -6.24 -39.87 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.80 Total: 2.81 kcal Atomic # 6 Polarization: 19.62 SS G_CDS: -1.83 Total: 17.79 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: 1.16 Total: -61.96 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: 0.15 Total: -21.17 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.62 -6.24 -39.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124059797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.931 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds