Wall clock time and date at job start Wed Apr 1 2020 04:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.47439 * 2 1 4 4 C 1.46492 * 120.00339 * 264.99928 * 3 2 1 5 5 C 1.50700 * 109.46958 * 263.14487 * 4 3 2 6 6 H 1.08005 * 120.00111 * 359.97438 * 5 4 3 7 7 C 1.37885 * 120.00076 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99772 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 119.99870 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47378 * 89.99889 * 9 7 5 11 11 H 1.48501 * 109.47133 * 209.99663 * 9 7 5 12 12 H 1.48502 * 109.47556 * 329.99674 * 9 7 5 13 13 C 1.34775 * 119.99431 * 84.99294 * 3 2 1 14 14 O 1.21359 * 120.00235 * 4.03531 * 13 3 2 15 15 C 1.49343 * 119.99815 * 184.03346 * 13 3 2 16 16 O 1.21380 * 119.99994 * 354.70372 * 15 13 3 17 17 N 1.34781 * 119.99803 * 174.69673 * 15 13 3 18 18 C 1.39602 * 119.99909 * 179.97438 * 17 15 13 19 19 N 1.31002 * 126.06410 * 0.02562 * 18 17 15 20 20 N 1.39918 * 108.84618 * 179.97438 * 19 18 17 21 21 C 1.46504 * 125.69395 * 179.97438 * 20 19 18 22 22 C 1.52996 * 109.47354 * 255.00419 * 21 20 19 23 23 C 1.53007 * 109.46791 * 15.00370 * 21 20 19 24 24 C 1.53000 * 109.47068 * 135.00142 * 21 20 19 25 25 C 1.34383 * 108.61849 * 0.02562 * 20 19 18 26 26 C 1.38009 * 107.53683 * 359.97438 * 25 20 19 27 27 C 1.43199 * 126.43808 * 179.97438 * 26 25 20 28 28 N 8.26265 * 96.68963 * 45.57731 * 2 1 3 29 29 H 1.08999 * 109.46717 * 59.99844 * 1 2 3 30 30 H 1.08992 * 109.47053 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47108 * 299.99920 * 1 2 3 32 32 H 1.09002 * 109.47132 * 240.00687 * 2 1 3 33 33 H 1.09000 * 109.47352 * 120.00563 * 2 1 3 34 34 H 1.09002 * 109.47387 * 23.14142 * 4 3 2 35 35 H 1.08999 * 109.47260 * 143.14468 * 4 3 2 36 36 H 0.96995 * 119.99935 * 179.97438 * 8 7 5 37 37 H 0.96996 * 120.00064 * 0.02562 * 17 15 13 38 38 H 1.09004 * 109.47010 * 59.99646 * 22 21 20 39 39 H 1.08998 * 109.47367 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.47037 * 299.99826 * 22 21 20 41 41 H 1.08994 * 109.46835 * 59.99730 * 23 21 20 42 42 H 1.08998 * 109.46708 * 179.97438 * 23 21 20 43 43 H 1.08998 * 109.46699 * 300.00172 * 23 21 20 44 44 H 1.09000 * 109.47107 * 60.00306 * 24 21 20 45 45 H 1.09001 * 109.46730 * 180.02562 * 24 21 20 46 46 H 1.09004 * 109.47001 * 300.00185 * 24 21 20 47 47 H 1.07998 * 126.23074 * 180.25912 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3669 2.0350 -1.2638 5 6 3.8533 1.9316 -1.4897 6 1 4.4761 1.4295 -0.7641 7 6 4.4183 2.4789 -2.6221 8 7 3.6599 3.0908 -3.5053 9 14 6.2607 2.3513 -2.9017 10 1 6.5623 1.1070 -3.6540 11 1 6.7256 3.5263 -3.6818 12 1 6.9592 2.3193 -1.5916 13 6 2.1470 2.0504 1.1628 14 8 1.9285 1.4864 2.2149 15 6 2.5584 3.4861 1.1566 16 8 2.8698 4.0236 0.1138 17 7 2.5836 4.1848 2.3088 18 6 2.9687 5.5267 2.3031 19 7 3.3267 6.2218 1.2520 20 7 3.6379 7.5246 1.6562 21 6 4.0818 8.6094 0.7772 22 6 5.5828 8.8372 0.9663 23 6 3.8026 8.2321 -0.6791 24 6 3.3233 9.8914 1.1263 25 6 3.4629 7.6147 2.9856 26 6 3.0415 6.3795 3.4342 27 6 2.7360 6.0249 4.7875 28 7 2.4925 5.7440 5.8610 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.8400 1.5461 -2.0832 35 1 2.0780 3.0852 -1.2214 36 1 4.0574 3.4762 -4.3018 37 1 2.3350 3.7552 3.1421 38 1 6.1232 7.9238 0.7176 39 1 5.9130 9.6445 0.3126 40 1 5.7817 9.1059 2.0038 41 1 2.7333 8.0698 -0.8138 42 1 4.1325 9.0394 -1.3331 43 1 4.3429 7.3187 -0.9277 44 1 3.5222 10.1601 2.1638 45 1 3.6533 10.6983 0.4720 46 1 2.2539 9.7291 0.9916 47 1 3.6187 8.4949 3.5917 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124059797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:28 Heat of formation + Delta-G solvation = 37.824215 kcal Electronic energy + Delta-G solvation = -31334.085645 eV Core-core repulsion = 27133.338703 eV Total energy + Delta-G solvation = -4200.746942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.77518 -41.67602 -39.63019 -38.15240 -37.39734 -37.13406 -35.51871 -34.69062 -32.07797 -31.65470 -31.05059 -29.03271 -28.29440 -28.25306 -26.75511 -24.95084 -24.54934 -23.85927 -21.98324 -21.51618 -20.11993 -19.41100 -18.77291 -18.34004 -17.97351 -17.38191 -17.08389 -16.77835 -16.67827 -16.44135 -15.99944 -15.43326 -15.14073 -14.96065 -14.84714 -14.81061 -14.50482 -14.30831 -14.17512 -14.09552 -13.69468 -13.55935 -13.47620 -13.19567 -13.16346 -13.15993 -13.04524 -12.77229 -12.73465 -12.65623 -12.44032 -12.34096 -12.13488 -12.08414 -11.77627 -11.76642 -11.65663 -11.53577 -10.66970 -10.18669 -10.04733 -9.64450 -9.43837 -8.14128 -6.23049 0.25731 0.51311 0.92389 1.22084 1.36825 1.38334 1.47425 1.54881 1.62685 2.22215 2.38494 2.52056 2.57352 3.02472 3.19407 3.35409 3.48039 3.72048 3.81174 3.91924 4.13451 4.16571 4.22606 4.33719 4.49887 4.50154 4.67494 4.69333 4.76218 4.79041 4.83739 4.91031 4.91332 4.91872 5.00776 5.19125 5.21697 5.26769 5.33384 5.36605 5.43957 5.61344 5.73275 5.80728 5.96261 6.11148 6.26405 6.52026 6.58556 6.80156 6.83180 7.04419 7.43113 8.94016 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008335 B = 0.004466 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.389844 B = 6267.400731 C = 8670.080783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.104 3.896 3 N -0.562 5.562 4 C 0.240 3.760 5 C -0.527 4.527 6 H 0.041 0.959 7 C 0.027 3.973 8 N -0.915 5.915 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.508 3.492 14 O -0.560 6.560 15 C 0.484 3.516 16 O -0.437 6.437 17 N -0.618 5.618 18 C 0.325 3.675 19 N -0.307 5.307 20 N -0.335 5.335 21 C 0.173 3.827 22 C -0.158 4.158 23 C -0.144 4.144 24 C -0.154 4.154 25 C 0.169 3.831 26 C -0.223 4.223 27 C 0.315 3.685 28 N -0.468 5.468 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.022 0.978 35 H 0.054 0.946 36 H 0.264 0.736 37 H 0.431 0.569 38 H 0.038 0.962 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.047 0.953 42 H 0.101 0.899 43 H 0.036 0.964 44 H 0.095 0.905 45 H 0.107 0.893 46 H 0.059 0.941 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.461 15.088 8.999 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.018 4.018 3 N -0.292 5.292 4 C 0.120 3.880 5 C -0.565 4.565 6 H 0.060 0.940 7 C -0.173 4.173 8 N -0.555 5.555 9 Si 0.775 3.225 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.206 1.206 13 C 0.290 3.710 14 O -0.441 6.441 15 C 0.264 3.736 16 O -0.302 6.302 17 N -0.271 5.271 18 C 0.065 3.935 19 N -0.135 5.135 20 N -0.114 5.114 21 C 0.092 3.908 22 C -0.215 4.215 23 C -0.202 4.202 24 C -0.212 4.212 25 C 0.013 3.987 26 C -0.241 4.241 27 C 0.001 3.999 28 N -0.146 5.146 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.271 0.729 38 H 0.057 0.943 39 H 0.124 0.876 40 H 0.108 0.892 41 H 0.066 0.934 42 H 0.119 0.881 43 H 0.055 0.945 44 H 0.114 0.886 45 H 0.125 0.875 46 H 0.078 0.922 47 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -0.508 14.811 8.720 17.195 hybrid contribution 0.758 -0.734 0.206 1.075 sum 0.251 14.077 8.927 16.671 Atomic orbital electron populations 1.22038 0.93949 1.03675 1.01543 1.21709 0.95694 0.80880 1.03511 1.48303 1.59228 1.14349 1.07347 1.19646 0.95060 0.94429 0.78882 1.21375 0.93197 1.36233 1.05711 0.94037 1.25480 1.01690 0.94470 0.95684 1.70013 1.36737 1.37528 1.11221 0.85700 0.80980 0.78014 0.77761 1.19327 1.20564 1.20629 1.19702 0.79610 0.87072 0.84604 1.90647 1.53056 1.69660 1.30780 1.20593 0.80419 0.88450 0.84093 1.91007 1.39835 1.69820 1.29583 1.42550 1.65967 1.07063 1.11542 1.19310 0.97217 0.85242 0.91731 1.78119 1.25384 0.90678 1.19320 1.49095 1.47941 1.08081 1.06264 1.21329 0.96654 0.83607 0.89165 1.22311 0.91244 1.02971 1.05013 1.21898 1.01917 1.02222 0.94125 1.22314 1.00058 0.93693 1.05141 1.23474 0.92180 0.98007 0.85028 1.15668 1.27456 0.95354 0.85604 1.24344 0.91466 0.93065 0.91050 1.81295 1.13074 1.08025 1.12160 0.92858 0.88587 0.93371 0.89321 0.90264 0.96003 0.92868 0.92741 0.72901 0.94252 0.87627 0.89236 0.93379 0.88084 0.94519 0.88582 0.87480 0.92176 0.73810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 10.20 71.98 0.73 -3.80 16 2 C 0.10 3.70 6.08 86.38 0.53 4.22 16 3 N -0.56 -24.82 2.49 -827.87 -2.06 -26.88 16 4 C 0.24 12.41 4.75 85.63 0.41 12.82 16 5 C -0.53 -29.64 8.36 25.60 0.21 -29.43 16 6 H 0.04 2.39 7.81 -2.91 -0.02 2.36 16 7 C 0.03 1.51 5.46 84.66 0.46 1.98 16 8 N -0.92 -53.83 13.29 21.45 0.28 -53.55 16 9 Si 0.95 45.08 29.54 68.60 2.03 47.10 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 13 C 0.51 22.22 7.63 87.24 0.67 22.89 16 14 O -0.56 -23.99 16.12 -3.27 -0.05 -24.04 16 15 C 0.48 21.15 7.73 87.24 0.67 21.82 16 16 O -0.44 -22.19 11.11 -3.34 -0.04 -22.22 16 17 N -0.62 -22.26 5.42 -308.22 -1.67 -23.93 16 18 C 0.32 10.70 7.80 133.94 1.05 11.74 16 19 N -0.31 -10.73 9.78 -53.97 -0.53 -11.26 16 20 N -0.34 -7.59 3.41 -306.04 -1.04 -8.63 16 21 C 0.17 2.83 1.23 3.60 0.00 2.84 16 22 C -0.16 -2.00 8.72 71.98 0.63 -1.37 16 23 C -0.14 -3.36 8.07 71.98 0.58 -2.78 16 24 C -0.15 -1.19 8.28 71.98 0.60 -0.59 16 25 C 0.17 2.79 10.56 84.25 0.89 3.68 16 26 C -0.22 -5.39 5.98 -21.20 -0.13 -5.52 16 27 C 0.31 7.99 15.62 88.33 1.38 9.37 16 28 N -0.47 -13.54 18.54 19.00 0.35 -13.19 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 3.08 8.03 -2.39 -0.02 3.06 16 33 H 0.08 2.74 7.52 -2.39 -0.02 2.72 16 34 H 0.02 1.16 8.02 -2.39 -0.02 1.15 16 35 H 0.05 3.05 5.37 -2.45 -0.01 3.03 16 36 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 37 H 0.43 13.94 8.09 -92.71 -0.75 13.19 16 38 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.04 1.18 8.03 -2.39 -0.02 1.16 16 44 H 0.10 0.21 7.33 -2.39 -0.02 0.19 16 45 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.25 0.99 7.52 -2.91 -0.02 0.97 16 Total: -1.00 -78.19 404.94 6.21 -71.98 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.26 Total: 16.75 kcal Atomic # 6 Polarization: 39.19 SS G_CDS: 8.68 Total: 47.87 kcal Atomic # 7 Polarization: -132.76 SS G_CDS: -4.66 Total: -137.43 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -0.09 Total: -46.27 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -78.19 6.21 -71.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124059797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.803 kcal (2) G-P(sol) polarization free energy of solvation -78.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds