Wall clock time and date at job start Wed Apr 1 2020 04:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.46905 * 2 1 4 4 C 1.46906 * 110.99683 * 287.93717 * 3 2 1 5 5 C 1.50702 * 109.46704 * 160.36471 * 4 3 2 6 6 H 1.07993 * 120.00325 * 4.66635 * 5 4 3 7 7 C 1.37881 * 119.99406 * 184.66863 * 5 4 3 8 8 N 1.31511 * 120.00350 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99483 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47174 * 60.00386 * 9 7 5 11 11 H 1.48506 * 109.46742 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47352 * 299.99930 * 9 7 5 13 13 C 1.46903 * 111.00133 * 163.98596 * 3 2 1 14 14 N 1.46498 * 109.46725 * 293.95305 * 13 3 2 15 15 N 1.28730 * 125.33921 * 270.02639 * 14 13 3 16 16 N 1.28989 * 108.95057 * 179.70950 * 15 14 13 17 17 C 1.34058 * 107.26238 * 0.42231 * 16 15 14 18 18 C 1.48439 * 126.67310 * 179.83868 * 17 16 15 19 19 C 1.39325 * 120.04244 * 179.69335 * 18 17 16 20 20 C 1.38009 * 120.02755 * 179.97438 * 19 18 17 21 21 C 1.38659 * 120.11954 * 0.02562 * 20 19 18 22 22 O 1.35956 * 119.95470 * 180.02562 * 21 20 19 23 23 C 1.42897 * 117.00137 * 359.97438 * 22 21 20 24 24 C 1.39241 * 120.08851 * 0.02562 * 21 20 19 25 25 O 1.36002 * 120.01571 * 180.02562 * 24 21 20 26 26 C 1.42892 * 117.00104 * 179.97438 * 25 24 21 27 27 C 1.38339 * 119.97175 * 0.27241 * 24 21 20 28 28 N 1.28871 * 125.34470 * 90.00266 * 14 13 3 29 29 H 1.09004 * 109.47102 * 179.27359 * 1 2 3 30 30 H 1.08995 * 109.47511 * 299.27172 * 1 2 3 31 31 H 1.09003 * 109.47443 * 59.27520 * 1 2 3 32 32 H 1.09001 * 109.47243 * 239.99970 * 2 1 3 33 33 H 1.08995 * 109.47057 * 119.99716 * 2 1 3 34 34 H 1.09001 * 109.47173 * 280.35790 * 4 3 2 35 35 H 1.08994 * 109.47436 * 40.36120 * 4 3 2 36 36 H 0.97002 * 119.99663 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.47045 * 173.95556 * 13 3 2 38 38 H 1.08998 * 109.47103 * 53.94701 * 13 3 2 39 39 H 1.08002 * 119.98449 * 0.02562 * 19 18 17 40 40 H 1.08002 * 119.93776 * 180.02562 * 20 19 18 41 41 H 1.09005 * 109.47669 * 59.99950 * 23 22 21 42 42 H 1.09001 * 109.47506 * 179.97438 * 23 22 21 43 43 H 1.08995 * 109.47382 * 300.00114 * 23 22 21 44 44 H 1.08999 * 109.47417 * 179.97438 * 26 25 24 45 45 H 1.09001 * 109.47594 * 59.99718 * 26 25 24 46 46 H 1.09007 * 109.47385 * 300.00112 * 26 25 24 47 47 H 1.08006 * 120.06199 * 179.70397 * 27 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7968 2.0221 -1.3049 5 6 1.8480 3.5200 -1.1477 6 1 2.1024 3.9544 -0.1923 7 6 1.5700 4.3359 -2.2239 8 7 1.2597 3.8070 -3.3873 9 14 1.6328 6.1927 -2.0289 10 1 2.9985 6.6008 -1.6127 11 1 1.2969 6.8379 -3.3236 12 1 0.6534 6.6154 -0.9958 13 6 3.4379 1.4420 0.3783 14 7 3.5886 1.0191 1.7728 15 7 3.5408 1.7981 2.7965 16 7 3.7051 1.0955 3.8657 17 6 3.8714 -0.1785 3.4828 18 6 4.0976 -1.3480 4.3685 19 6 4.2472 -2.6199 3.8198 20 6 4.4580 -3.7070 4.6434 21 6 4.5210 -3.5365 6.0181 22 8 4.7293 -4.6097 6.8263 23 6 4.8740 -5.8817 6.1915 24 6 4.3710 -2.2678 6.5718 25 8 4.4335 -2.1023 7.9202 26 6 4.2718 -0.7730 8.4189 27 6 4.1534 -1.1764 5.7500 28 7 3.7894 -0.1912 2.1672 29 1 -0.3633 -1.0276 -0.0130 30 1 -0.3634 0.5024 0.8964 31 1 -0.3634 0.5251 -0.8834 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.5717 1.7033 -2.0019 35 1 0.8196 1.7303 -1.6896 36 1 1.0645 4.3810 -4.1444 37 1 3.8029 2.4630 0.2669 38 1 4.0130 0.7780 -0.2669 39 1 4.1990 -2.7550 2.7493 40 1 4.5742 -4.6922 4.2165 41 1 5.7278 -5.8550 5.5143 42 1 5.0350 -6.6494 6.9483 43 1 3.9700 -6.1111 5.6273 44 1 4.3425 -0.7817 9.5065 45 1 3.2957 -0.3896 8.1217 46 1 5.0535 -0.1334 8.0087 47 1 4.0321 -0.1923 6.1783 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125332861.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:36 Heat of formation + Delta-G solvation = 96.813992 kcal Electronic energy + Delta-G solvation = -29948.210986 eV Core-core repulsion = 25750.022032 eV Total energy + Delta-G solvation = -4198.188954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.98867 -40.77505 -38.70640 -37.63175 -37.17703 -34.10823 -33.06274 -32.74463 -30.88243 -30.59056 -29.94121 -27.83052 -27.49392 -27.40702 -25.57755 -24.03638 -22.99289 -22.82393 -21.83837 -21.54001 -20.24610 -18.85759 -17.73463 -17.22686 -17.13841 -16.68567 -16.48464 -16.32022 -15.48971 -15.42771 -14.99981 -14.93786 -14.75187 -14.54365 -14.04205 -13.84991 -13.70025 -13.29059 -13.04319 -12.88495 -12.59374 -12.45512 -12.24093 -11.90659 -11.69709 -11.67909 -11.52374 -11.44844 -11.43235 -11.40360 -11.27561 -10.98812 -10.83658 -10.74365 -10.66571 -10.47782 -10.22597 -9.89707 -9.45828 -8.91500 -8.58349 -7.97723 -7.77607 -6.18389 -4.21933 0.69615 1.09364 1.57754 2.23680 2.50334 2.94805 3.02624 3.27326 3.31648 3.35582 3.58437 3.80833 4.26940 4.34505 4.51256 4.59701 4.69270 4.81447 4.85195 4.91674 5.01395 5.05357 5.05705 5.17813 5.18162 5.25607 5.33404 5.38943 5.45332 5.49751 5.62001 5.71037 5.85695 5.92024 5.96417 6.03548 6.14529 6.28615 6.30911 6.36178 6.43040 6.62001 6.75484 6.80934 7.00267 7.28062 7.56212 7.67934 7.88770 8.20691 8.63487 8.85149 9.44126 10.91558 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019500 B = 0.002174 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.530371 B =12873.918730 C =13800.814144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.042 3.958 3 N -0.543 5.543 4 C 0.199 3.801 5 C -0.520 4.520 6 H 0.067 0.933 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.900 3.100 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.298 3.702 14 N -0.116 5.116 15 N -0.036 5.036 16 N -0.290 5.290 17 C 0.195 3.805 18 C 0.002 3.998 19 C -0.077 4.077 20 C -0.175 4.175 21 C 0.111 3.889 22 O -0.305 6.305 23 C 0.025 3.975 24 C 0.097 3.903 25 O -0.306 6.306 26 C 0.023 3.977 27 C -0.134 4.134 28 N -0.301 5.301 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.033 0.967 33 H 0.064 0.936 34 H -0.001 1.001 35 H 0.051 0.949 36 H 0.264 0.736 37 H 0.139 0.861 38 H 0.082 0.918 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.056 0.944 42 H 0.100 0.900 43 H 0.056 0.944 44 H 0.100 0.900 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.282 -17.030 16.825 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 N -0.270 5.270 4 C 0.075 3.925 5 C -0.558 4.558 6 H 0.085 0.915 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.728 3.272 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.089 3.911 14 N -0.030 5.030 15 N -0.029 5.029 16 N -0.162 5.162 17 C -0.084 4.084 18 C -0.002 4.002 19 C -0.098 4.098 20 C -0.194 4.194 21 C 0.065 3.935 22 O -0.218 6.218 23 C -0.070 4.070 24 C 0.052 3.948 25 O -0.220 6.220 26 C -0.072 4.072 27 C -0.155 4.155 28 N -0.153 5.153 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.016 0.984 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.156 0.844 38 H 0.099 0.901 39 H 0.156 0.844 40 H 0.159 0.841 41 H 0.075 0.925 42 H 0.118 0.882 43 H 0.075 0.925 44 H 0.119 0.881 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.880 -16.162 17.052 24.480 hybrid contribution 0.351 0.270 -0.935 1.035 sum 7.231 -15.892 16.116 23.761 Atomic orbital electron populations 1.21712 0.94702 1.00420 1.03051 1.22184 0.96789 0.89535 1.00129 1.62119 1.12529 1.16208 1.36175 1.19847 0.97607 0.94418 0.80639 1.21116 1.47835 0.90129 0.96742 0.91532 1.24968 0.94889 0.99294 0.95050 1.69928 1.46669 1.35740 1.01066 0.86515 0.78786 0.84623 0.77294 1.20079 1.21311 1.19997 1.22810 0.93835 1.03112 0.71315 1.50516 1.40428 1.01006 1.11024 1.78974 1.13724 1.20916 0.89309 1.75990 1.18541 1.01729 1.19922 1.23381 1.03813 0.93212 0.87998 1.16870 1.04255 0.88862 0.90175 1.20905 0.98017 0.90249 1.00611 1.20962 1.07128 1.00340 0.90962 1.18367 1.00345 0.85634 0.89182 1.86168 1.86815 1.14574 1.34290 1.23101 1.01226 0.83073 0.99646 1.17986 1.02454 0.90919 0.83468 1.86161 1.87790 1.30431 1.17591 1.23124 1.01586 0.82178 1.00289 1.21061 1.03421 0.98627 0.92411 1.74770 1.21386 1.05787 1.13328 0.93161 0.92525 0.91626 0.94843 0.91751 0.98362 0.93123 0.92594 0.84377 0.90060 0.84358 0.84103 0.92542 0.88175 0.92505 0.88131 0.92334 0.92369 0.83352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.99 37.16 0.37 -2.00 16 2 C 0.04 0.73 5.60 -3.83 -0.02 0.71 16 3 N -0.54 -10.87 4.52 -239.98 -1.08 -11.95 16 4 C 0.20 4.65 4.59 -4.97 -0.02 4.63 16 5 C -0.52 -13.51 8.61 -34.44 -0.30 -13.81 16 6 H 0.07 1.74 7.66 -52.49 -0.40 1.33 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -24.96 13.29 55.43 0.74 -24.22 16 9 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 13 C 0.30 5.29 6.12 -63.31 -0.39 4.90 16 14 N -0.12 -2.06 3.82 -13.30 -0.05 -2.11 16 15 N -0.04 -0.68 13.23 60.35 0.80 0.12 16 16 N -0.29 -5.13 12.23 32.15 0.39 -4.73 16 17 C 0.20 3.15 7.93 -156.30 -1.24 1.91 16 18 C 0.00 0.03 5.88 -104.88 -0.62 -0.59 16 19 C -0.08 -0.88 9.69 -39.26 -0.38 -1.26 16 20 C -0.18 -1.70 9.02 -39.51 -0.36 -2.05 16 21 C 0.11 1.24 6.70 -39.05 -0.26 0.98 16 22 O -0.31 -3.20 10.27 -34.26 -0.35 -3.55 16 23 C 0.02 0.15 9.81 101.05 0.99 1.14 16 24 C 0.10 1.16 6.69 -39.17 -0.26 0.90 16 25 O -0.31 -3.52 10.28 -34.40 -0.35 -3.87 16 26 C 0.02 0.18 9.81 101.05 0.99 1.18 16 27 C -0.13 -1.64 8.69 -39.14 -0.34 -1.98 16 28 N -0.30 -5.01 10.34 32.17 0.33 -4.68 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.19 6.52 -51.93 -0.34 0.85 16 32 H 0.03 0.57 8.05 -51.93 -0.42 0.15 16 33 H 0.06 1.11 6.11 -51.93 -0.32 0.79 16 34 H 0.00 -0.03 8.00 -51.93 -0.42 -0.45 16 35 H 0.05 1.28 6.24 -51.93 -0.32 0.95 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.14 2.50 7.32 -51.93 -0.38 2.12 16 38 H 0.08 1.28 8.12 -51.93 -0.42 0.86 16 39 H 0.14 1.47 7.87 -52.49 -0.41 1.06 16 40 H 0.14 0.95 6.28 -52.49 -0.33 0.62 16 41 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 42 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 44 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 46 H 0.06 0.42 7.67 -51.93 -0.40 0.03 16 47 H 0.15 1.71 6.11 -52.48 -0.32 1.39 16 LS Contribution 393.23 15.07 5.93 5.93 Total: -1.00 -30.86 393.23 -7.10 -37.96 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -6.50 Total: -0.80 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -1.93 Total: -3.83 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 1.13 Total: -47.57 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.71 Total: -7.43 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.86 -7.10 -37.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125332861.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.771 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds