Wall clock time and date at job start Wed Apr 1 2020 04:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.46905 * 2 1 4 4 C 1.46906 * 110.99683 * 287.93717 * 3 2 1 5 5 C 1.50702 * 109.46704 * 160.36471 * 4 3 2 6 6 H 1.07993 * 120.00325 * 4.66635 * 5 4 3 7 7 C 1.37881 * 119.99406 * 184.66863 * 5 4 3 8 8 N 1.31511 * 120.00350 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99483 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47174 * 60.00386 * 9 7 5 11 11 H 1.48506 * 109.46742 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47352 * 299.99930 * 9 7 5 13 13 C 1.46903 * 111.00133 * 163.98596 * 3 2 1 14 14 N 1.46498 * 109.46725 * 293.95305 * 13 3 2 15 15 N 1.28730 * 125.33921 * 270.02639 * 14 13 3 16 16 N 1.28989 * 108.95057 * 179.70950 * 15 14 13 17 17 C 1.34058 * 107.26238 * 0.42231 * 16 15 14 18 18 C 1.48439 * 126.67310 * 179.83868 * 17 16 15 19 19 C 1.39325 * 120.04244 * 179.69335 * 18 17 16 20 20 C 1.38009 * 120.02755 * 179.97438 * 19 18 17 21 21 C 1.38659 * 120.11954 * 0.02562 * 20 19 18 22 22 O 1.35956 * 119.95470 * 180.02562 * 21 20 19 23 23 C 1.42897 * 117.00137 * 359.97438 * 22 21 20 24 24 C 1.39241 * 120.08851 * 0.02562 * 21 20 19 25 25 O 1.36002 * 120.01571 * 180.02562 * 24 21 20 26 26 C 1.42892 * 117.00104 * 179.97438 * 25 24 21 27 27 C 1.38339 * 119.97175 * 0.27241 * 24 21 20 28 28 N 1.28871 * 125.34470 * 90.00266 * 14 13 3 29 29 H 1.09004 * 109.47102 * 179.27359 * 1 2 3 30 30 H 1.08995 * 109.47511 * 299.27172 * 1 2 3 31 31 H 1.09003 * 109.47443 * 59.27520 * 1 2 3 32 32 H 1.09001 * 109.47243 * 239.99970 * 2 1 3 33 33 H 1.08995 * 109.47057 * 119.99716 * 2 1 3 34 34 H 1.09001 * 109.47173 * 280.35790 * 4 3 2 35 35 H 1.08994 * 109.47436 * 40.36120 * 4 3 2 36 36 H 0.97002 * 119.99663 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.47045 * 173.95556 * 13 3 2 38 38 H 1.08998 * 109.47103 * 53.94701 * 13 3 2 39 39 H 1.08002 * 119.98449 * 0.02562 * 19 18 17 40 40 H 1.08002 * 119.93776 * 180.02562 * 20 19 18 41 41 H 1.09005 * 109.47669 * 59.99950 * 23 22 21 42 42 H 1.09001 * 109.47506 * 179.97438 * 23 22 21 43 43 H 1.08995 * 109.47382 * 300.00114 * 23 22 21 44 44 H 1.08999 * 109.47417 * 179.97438 * 26 25 24 45 45 H 1.09001 * 109.47594 * 59.99718 * 26 25 24 46 46 H 1.09007 * 109.47385 * 300.00112 * 26 25 24 47 47 H 1.08006 * 120.06199 * 179.70397 * 27 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7968 2.0221 -1.3049 5 6 1.8480 3.5200 -1.1477 6 1 2.1024 3.9544 -0.1923 7 6 1.5700 4.3359 -2.2239 8 7 1.2597 3.8070 -3.3873 9 14 1.6328 6.1927 -2.0289 10 1 2.9985 6.6008 -1.6127 11 1 1.2969 6.8379 -3.3236 12 1 0.6534 6.6154 -0.9958 13 6 3.4379 1.4420 0.3783 14 7 3.5886 1.0191 1.7728 15 7 3.5408 1.7981 2.7965 16 7 3.7051 1.0955 3.8657 17 6 3.8714 -0.1785 3.4828 18 6 4.0976 -1.3480 4.3685 19 6 4.2472 -2.6199 3.8198 20 6 4.4580 -3.7070 4.6434 21 6 4.5210 -3.5365 6.0181 22 8 4.7293 -4.6097 6.8263 23 6 4.8740 -5.8817 6.1915 24 6 4.3710 -2.2678 6.5718 25 8 4.4335 -2.1023 7.9202 26 6 4.2718 -0.7730 8.4189 27 6 4.1534 -1.1764 5.7500 28 7 3.7894 -0.1912 2.1672 29 1 -0.3633 -1.0276 -0.0130 30 1 -0.3634 0.5024 0.8964 31 1 -0.3634 0.5251 -0.8834 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.5717 1.7033 -2.0019 35 1 0.8196 1.7303 -1.6896 36 1 1.0645 4.3810 -4.1444 37 1 3.8029 2.4630 0.2669 38 1 4.0130 0.7780 -0.2669 39 1 4.1990 -2.7550 2.7493 40 1 4.5742 -4.6922 4.2165 41 1 5.7278 -5.8550 5.5143 42 1 5.0350 -6.6494 6.9483 43 1 3.9700 -6.1111 5.6273 44 1 4.3425 -0.7817 9.5065 45 1 3.2957 -0.3896 8.1217 46 1 5.0535 -0.1334 8.0087 47 1 4.0321 -0.1923 6.1783 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125332861.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:35 Heat of formation + Delta-G solvation = 77.584104 kcal Electronic energy + Delta-G solvation = -29949.044856 eV Core-core repulsion = 25750.022032 eV Total energy + Delta-G solvation = -4199.022824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.32610 -41.58145 -39.45328 -39.10727 -38.11385 -35.54147 -34.66128 -34.30668 -32.08825 -31.47336 -31.11837 -29.40343 -28.27854 -28.06824 -27.14065 -25.16488 -24.57568 -24.17396 -22.81785 -22.59867 -21.76674 -19.70624 -18.82886 -18.76815 -18.27357 -18.18588 -17.53477 -17.05833 -16.74225 -16.45688 -16.14270 -16.08380 -15.76803 -15.69840 -15.44209 -15.29774 -14.94088 -14.32670 -14.14425 -14.02162 -13.81718 -13.62292 -13.52349 -13.16165 -13.02114 -12.97572 -12.76260 -12.72399 -12.57936 -12.43747 -12.30206 -12.24145 -12.19452 -12.08371 -12.07425 -11.97979 -11.75281 -11.38237 -11.21648 -10.60715 -9.79560 -9.38920 -8.84705 -8.21922 -6.31174 -0.30342 0.21105 0.25728 0.86645 1.34679 1.43944 1.45314 1.53076 2.26405 2.30517 2.39632 2.65518 2.66720 2.94242 3.13782 3.18693 3.70147 3.84143 3.96957 4.01473 4.06401 4.17883 4.20481 4.29988 4.36563 4.40824 4.41859 4.46935 4.48031 4.55681 4.59357 4.62176 4.74997 4.77446 4.81675 4.84256 4.95081 5.04484 5.08922 5.15955 5.22225 5.23518 5.37348 5.48037 5.63313 5.96227 6.01354 6.04343 6.34923 6.52206 6.81636 7.28815 7.38461 8.87645 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019500 B = 0.002174 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.530371 B =12873.918730 C =13800.814144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.044 3.956 3 N -0.557 5.557 4 C 0.216 3.784 5 C -0.529 4.529 6 H 0.061 0.939 7 C 0.013 3.987 8 N -0.926 5.926 9 Si 0.959 3.041 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.275 1.275 13 C 0.302 3.698 14 N -0.118 5.118 15 N -0.061 5.061 16 N -0.300 5.300 17 C 0.203 3.797 18 C -0.026 4.026 19 C -0.073 4.073 20 C -0.165 4.165 21 C 0.112 3.888 22 O -0.324 6.324 23 C 0.013 3.987 24 C 0.084 3.916 25 O -0.321 6.321 26 C 0.017 3.983 27 C -0.135 4.135 28 N -0.302 5.302 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.071 0.929 34 H -0.012 1.012 35 H 0.030 0.970 36 H 0.266 0.734 37 H 0.131 0.869 38 H 0.104 0.896 39 H 0.146 0.854 40 H 0.175 0.825 41 H 0.070 0.930 42 H 0.118 0.882 43 H 0.070 0.930 44 H 0.124 0.876 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.901 -18.731 17.747 26.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.083 4.083 3 N -0.284 5.284 4 C 0.091 3.909 5 C -0.567 4.567 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.566 5.566 9 Si 0.785 3.215 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.200 1.200 13 C 0.093 3.907 14 N -0.032 5.032 15 N -0.054 5.054 16 N -0.172 5.172 17 C -0.076 4.076 18 C -0.029 4.029 19 C -0.093 4.093 20 C -0.183 4.183 21 C 0.065 3.935 22 O -0.237 6.237 23 C -0.081 4.081 24 C 0.039 3.961 25 O -0.236 6.236 26 C -0.078 4.078 27 C -0.156 4.156 28 N -0.153 5.153 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.006 0.994 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.148 0.852 38 H 0.122 0.878 39 H 0.164 0.836 40 H 0.192 0.808 41 H 0.089 0.911 42 H 0.136 0.864 43 H 0.088 0.912 44 H 0.142 0.858 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.510 -17.877 18.000 26.457 hybrid contribution 0.194 0.613 -1.069 1.247 sum 7.704 -17.264 16.931 25.378 Atomic orbital electron populations 1.21677 0.94228 1.01971 1.01480 1.22221 0.97164 0.88195 1.00758 1.61938 1.14337 1.17801 1.34316 1.19441 0.96067 0.93434 0.81957 1.21400 1.47230 0.91679 0.96419 0.92067 1.25713 0.94692 1.03376 0.94826 1.70025 1.47748 1.37115 1.01708 0.85582 0.78973 0.79803 0.77159 1.19200 1.20944 1.20046 1.22739 0.92768 1.03463 0.71719 1.50414 1.40745 1.01331 1.10680 1.78954 1.14803 1.21765 0.89895 1.75964 1.19016 1.02540 1.19652 1.23890 1.02247 0.93422 0.88088 1.16991 1.06922 0.88765 0.90246 1.21044 0.97260 0.89809 1.01216 1.21243 1.05617 1.01283 0.90169 1.18602 0.99304 0.85800 0.89835 1.86156 1.86475 1.15753 1.35345 1.23452 1.02487 0.81414 1.00754 1.18165 1.02858 0.91368 0.83737 1.86141 1.87837 1.32214 1.17366 1.23351 1.01791 0.80986 1.01640 1.21031 1.03477 0.98927 0.92137 1.74760 1.21829 1.05096 1.13594 0.90073 0.93634 0.93518 0.93920 0.91109 0.99410 0.95153 0.92552 0.85174 0.87841 0.83593 0.80801 0.91121 0.86367 0.91188 0.85829 0.92196 0.92042 0.83445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 9.99 71.98 0.72 -3.76 16 2 C 0.04 1.52 5.60 86.30 0.48 2.00 16 3 N -0.56 -22.30 4.52 -913.16 -4.13 -26.43 16 4 C 0.22 10.26 4.59 85.56 0.39 10.65 16 5 C -0.53 -27.79 8.61 25.60 0.22 -27.57 16 6 H 0.06 3.22 7.66 -2.91 -0.02 3.20 16 7 C 0.01 0.71 5.46 84.66 0.46 1.17 16 8 N -0.93 -52.12 13.29 21.45 0.28 -51.83 16 9 Si 0.96 42.67 29.54 68.60 2.03 44.70 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 12 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 13 C 0.30 10.65 6.12 170.81 1.05 11.70 16 14 N -0.12 -4.15 3.82 -195.98 -0.75 -4.90 16 15 N -0.06 -2.31 13.23 37.02 0.49 -1.82 16 16 N -0.30 -10.64 12.23 -52.19 -0.64 -11.28 16 17 C 0.20 6.44 7.93 137.37 1.09 7.53 16 18 C -0.03 -0.66 5.88 -20.03 -0.12 -0.78 16 19 C -0.07 -1.51 9.69 22.48 0.22 -1.29 16 20 C -0.16 -2.75 9.02 22.32 0.20 -2.55 16 21 C 0.11 2.29 6.70 22.61 0.15 2.44 16 22 O -0.32 -6.10 10.27 -79.04 -0.81 -6.91 16 23 C 0.01 0.11 9.81 113.37 1.11 1.23 16 24 C 0.08 1.94 6.69 22.54 0.15 2.09 16 25 O -0.32 -7.15 10.28 -79.56 -0.82 -7.96 16 26 C 0.02 0.25 9.81 113.37 1.11 1.36 16 27 C -0.13 -3.24 8.69 22.56 0.20 -3.05 16 28 N -0.30 -9.80 10.34 -52.14 -0.54 -10.34 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.70 6.52 -2.39 -0.02 1.69 16 32 H 0.04 1.39 8.05 -2.39 -0.02 1.37 16 33 H 0.07 2.35 6.11 -2.39 -0.01 2.34 16 34 H -0.01 -0.58 8.00 -2.39 -0.02 -0.60 16 35 H 0.03 1.57 6.24 -2.39 -0.01 1.55 16 36 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 37 H 0.13 4.77 7.32 -2.39 -0.02 4.75 16 38 H 0.10 3.18 8.12 -2.39 -0.02 3.16 16 39 H 0.15 2.77 7.87 -2.91 -0.02 2.75 16 40 H 0.17 1.66 6.28 -2.91 -0.02 1.64 16 41 H 0.07 0.43 7.66 -2.38 -0.02 0.41 16 42 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 44 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.06 0.87 7.65 -2.39 -0.02 0.85 16 46 H 0.06 0.87 7.67 -2.38 -0.02 0.85 16 47 H 0.15 3.43 6.11 -2.91 -0.02 3.41 16 Total: -1.00 -66.32 393.23 3.55 -62.77 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 1.00 Total: 12.83 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 7.44 Total: 1.18 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -5.28 Total: -106.60 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -1.63 Total: -14.87 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -66.32 3.55 -62.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125332861.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.353 kcal (2) G-P(sol) polarization free energy of solvation -66.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds