Wall clock time and date at job start Wed Apr 1 2020 04:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.46956 * 2 1 4 4 C 1.46499 * 120.00044 * 269.99630 * 3 2 1 5 5 C 1.50701 * 109.47073 * 270.00336 * 4 3 2 6 6 H 1.08000 * 120.00315 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00295 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99505 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00354 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47215 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47183 * 119.99789 * 9 7 5 12 12 H 1.48505 * 109.46981 * 240.00032 * 9 7 5 13 13 C 1.34780 * 120.00117 * 90.00049 * 3 2 1 14 14 O 1.21282 * 119.99895 * 179.97438 * 13 3 2 15 15 C 1.50695 * 119.99885 * 359.97438 * 13 3 2 16 16 N 1.46499 * 109.46988 * 180.02562 * 15 13 3 17 17 C 1.35694 * 119.86126 * 269.97514 * 16 15 13 18 18 N 1.30075 * 123.05063 * 180.02562 * 17 16 15 19 19 C 1.34232 * 121.87683 * 0.02562 * 18 17 16 20 20 C 1.40377 * 119.18325 * 359.97438 * 19 18 17 21 21 C 1.40728 * 107.27427 * 180.02562 * 20 19 18 22 22 N 1.30451 * 108.32166 * 359.71943 * 21 20 19 23 23 N 1.35830 * 134.22906 * 179.97438 * 19 18 17 24 24 C 1.46506 * 125.84440 * 359.97438 * 23 19 18 25 25 C 1.52997 * 109.47289 * 119.99714 * 24 23 19 26 26 C 1.52992 * 109.46999 * 240.00182 * 24 23 19 27 27 C 1.35370 * 119.86316 * 90.00110 * 16 15 13 28 28 O 1.21828 * 121.24395 * 359.97438 * 27 16 15 29 29 H 1.08994 * 109.47207 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46893 * 300.00299 * 1 2 3 31 31 H 1.08999 * 109.46660 * 60.00299 * 1 2 3 32 32 H 1.09000 * 109.47507 * 239.99473 * 2 1 3 33 33 H 1.08999 * 109.46660 * 119.99701 * 2 1 3 34 34 H 1.09004 * 109.47264 * 29.99852 * 4 3 2 35 35 H 1.08997 * 109.47631 * 150.00201 * 4 3 2 36 36 H 0.96998 * 119.99877 * 180.02562 * 8 7 5 37 37 H 1.08994 * 109.47305 * 59.99977 * 15 13 3 38 38 H 1.08998 * 109.47027 * 300.00092 * 15 13 3 39 39 H 1.08000 * 118.47019 * 0.02562 * 17 16 15 40 40 H 1.07997 * 125.84145 * 180.02562 * 21 20 19 41 41 H 1.08998 * 109.46566 * 359.97438 * 24 23 19 42 42 H 1.09002 * 109.47153 * 179.97438 * 25 24 23 43 43 H 1.09001 * 109.46832 * 60.00146 * 25 24 23 44 44 H 1.09004 * 109.47261 * 300.00128 * 25 24 23 45 45 H 1.09001 * 109.47066 * 299.99819 * 26 24 23 46 46 H 1.08996 * 109.47747 * 59.99485 * 26 24 23 47 47 H 1.09002 * 109.47103 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3430 1.2308 -1.0957 7 6 4.1493 2.3895 -2.8779 8 7 3.3493 3.1256 -3.6181 9 14 5.9133 2.0954 -3.4175 10 1 6.6010 1.2404 -2.4168 11 1 5.9203 1.4161 -4.7380 12 1 6.6211 3.3963 -3.5262 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9913 1.3064 2.4723 16 7 2.3082 2.2041 3.5858 17 6 3.5636 2.2256 4.1001 18 7 3.9126 2.9969 5.0876 19 6 3.0434 3.8353 5.6737 20 6 1.7196 3.8834 5.2092 21 6 1.0368 4.8337 5.9909 22 7 1.8724 5.3220 6.8655 23 7 3.1293 4.7284 6.6935 24 6 4.3296 5.0171 7.4823 25 6 4.6945 6.4954 7.3333 26 6 4.0592 4.7044 8.9553 27 6 1.3471 3.0085 4.0976 28 8 0.2143 3.0036 3.6494 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8935 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5818 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 3.6752 3.5155 -4.4443 37 1 2.6211 0.4187 2.5302 38 1 0.9432 1.0126 2.5298 39 1 4.3076 1.5718 3.6696 40 1 -0.0027 5.1080 5.8879 41 1 5.1552 4.4010 7.1260 42 1 5.5873 6.7103 7.9206 43 1 3.8686 7.1111 7.6898 44 1 4.8871 6.7182 6.2838 45 1 3.2334 5.3200 9.3118 46 1 3.7993 3.6512 9.0615 47 1 4.9524 4.9187 9.5421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127033071.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:51 Heat of formation + Delta-G solvation = 39.109440 kcal Electronic energy + Delta-G solvation = -30874.127439 eV Core-core repulsion = 26673.436228 eV Total energy + Delta-G solvation = -4200.691211 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.16270 -40.36039 -38.82257 -37.43090 -35.86022 -35.47560 -34.39639 -32.85470 -30.70754 -30.20084 -29.85785 -28.82178 -27.60190 -26.62763 -24.75371 -23.61067 -23.13208 -23.03530 -22.31057 -20.16349 -18.90378 -18.65357 -18.08998 -17.27024 -16.90513 -16.46904 -15.92141 -15.78831 -15.34188 -14.93595 -14.78946 -14.63648 -14.51156 -14.30543 -14.09346 -13.78978 -13.50958 -13.28753 -13.18053 -12.84174 -12.70444 -12.61880 -12.49611 -12.11472 -12.01748 -11.74189 -11.69791 -11.65485 -11.27654 -11.01435 -10.96913 -10.81742 -10.63099 -10.53355 -10.22070 -10.20661 -10.11739 -9.70198 -9.29842 -8.97426 -8.49760 -8.32658 -7.81313 -6.10268 -4.15746 0.64169 1.74422 1.88075 2.34885 2.40976 3.13983 3.25437 3.33477 3.35744 3.51008 3.77889 3.82900 4.10655 4.37541 4.39702 4.50225 4.60018 4.62488 4.78482 4.81989 4.90285 5.08152 5.16292 5.21380 5.24549 5.24860 5.27173 5.40361 5.41615 5.47515 5.54821 5.70021 5.78090 5.84527 5.93071 5.99913 6.16219 6.29872 6.40487 6.45054 6.69792 6.94400 7.32505 7.36551 7.41702 7.71572 7.82202 7.85286 8.15071 8.23585 8.76253 8.92030 9.49425 10.97995 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013076 B = 0.002852 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.756862 B = 9814.790845 C =11074.819258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.104 3.896 3 N -0.590 5.590 4 C 0.247 3.753 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.492 3.508 14 O -0.528 6.528 15 C 0.072 3.928 16 N -0.524 5.524 17 C 0.433 3.567 18 N -0.542 5.542 19 C 0.339 3.661 20 C -0.341 4.341 21 C 0.127 3.873 22 N -0.275 5.275 23 N -0.349 5.349 24 C 0.157 3.843 25 C -0.161 4.161 26 C -0.159 4.159 27 C 0.581 3.419 28 O -0.515 6.515 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.035 0.965 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.211 0.789 40 H 0.195 0.805 41 H 0.110 0.890 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.060 0.940 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.095 -4.968 21.423 21.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.021 4.021 3 N -0.322 5.322 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.276 3.724 14 O -0.405 6.405 15 C -0.054 4.054 16 N -0.244 5.244 17 C 0.143 3.857 18 N -0.267 5.267 19 C 0.102 3.898 20 C -0.357 4.357 21 C -0.063 4.063 22 N -0.094 5.094 23 N -0.133 5.133 24 C 0.056 3.944 25 C -0.219 4.219 26 C -0.217 4.217 27 C 0.376 3.624 28 O -0.390 6.390 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.227 0.773 40 H 0.212 0.788 41 H 0.128 0.872 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.336 -3.214 22.458 22.690 hybrid contribution 0.188 -0.673 -1.558 1.708 sum 0.523 -3.887 20.900 21.265 Atomic orbital electron populations 1.22247 0.96450 1.01652 1.02761 1.21501 0.93835 0.83836 1.02881 1.48249 1.63128 1.13376 1.07426 1.19327 0.96467 0.93696 0.77746 1.21422 0.96747 1.32123 1.06347 0.92338 1.24951 0.97906 0.94868 0.96412 1.69943 1.35651 1.33262 1.14290 0.86436 0.84498 0.78062 0.78360 1.19762 1.20942 1.20901 1.20275 0.79643 0.87375 0.85113 1.90743 1.45511 1.17518 1.86725 1.22032 1.06007 0.92472 0.84925 1.46304 1.11067 1.36643 1.30389 1.24687 0.84639 0.90669 0.85675 1.67173 1.33723 1.11731 1.14119 1.19064 0.90422 0.90643 0.89649 1.20988 0.96014 1.11466 1.07269 1.23466 0.99796 0.92333 0.90695 1.77170 0.88432 1.20351 1.23405 1.48633 1.09361 1.29919 1.25422 1.21454 0.82967 0.98596 0.91383 1.22142 1.02555 0.94113 1.03099 1.22128 1.03207 1.02605 0.93759 1.17396 0.84307 0.78953 0.81776 1.90868 1.19330 1.66764 1.61988 0.91931 0.92786 0.91853 0.89451 0.91757 0.94725 0.93880 0.92688 0.86017 0.85657 0.77274 0.78785 0.87225 0.90489 0.91070 0.91875 0.91066 0.92118 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.10 1.45 5.93 -4.04 -0.02 1.42 16 3 N -0.59 -11.51 2.46 -175.06 -0.43 -11.94 16 4 C 0.25 6.20 5.16 -5.19 -0.03 6.18 16 5 C -0.53 -14.28 9.39 -34.44 -0.32 -14.60 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 9 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 C 0.49 9.48 7.74 -10.99 -0.09 9.39 16 14 O -0.53 -12.92 16.01 5.56 0.09 -12.83 16 15 C 0.07 0.94 4.41 -5.20 -0.02 0.91 16 16 N -0.52 -7.48 2.09 -120.39 -0.25 -7.73 16 17 C 0.43 5.20 11.42 -90.13 -1.03 4.17 16 18 N -0.54 -7.25 10.37 -13.46 -0.14 -7.39 16 19 C 0.34 4.98 7.98 -155.96 -1.24 3.73 16 20 C -0.34 -5.41 6.39 -104.92 -0.67 -6.08 16 21 C 0.13 1.77 12.04 -17.20 -0.21 1.56 16 22 N -0.28 -3.76 12.31 30.74 0.38 -3.38 16 23 N -0.35 -4.57 3.30 -53.99 -0.18 -4.75 16 24 C 0.16 1.51 3.69 -67.93 -0.25 1.26 16 25 C -0.16 -1.39 9.45 37.16 0.35 -1.04 16 26 C -0.16 -1.21 9.44 37.15 0.35 -0.86 16 27 C 0.58 9.89 7.66 -12.76 -0.10 9.79 16 28 O -0.52 -10.03 16.86 5.07 0.09 -9.94 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.68 7.22 -51.93 -0.37 0.30 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16 33 H 0.06 0.65 6.44 -51.93 -0.33 0.32 16 34 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 35 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.12 0.99 7.26 -51.93 -0.38 0.61 16 38 H 0.13 1.55 6.51 -51.93 -0.34 1.22 16 39 H 0.21 1.57 8.00 -52.49 -0.42 1.15 16 40 H 0.20 2.18 8.06 -52.49 -0.42 1.76 16 41 H 0.11 0.99 8.07 -51.93 -0.42 0.57 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 400.32 15.07 6.03 6.03 Total: -1.00 -37.69 400.32 -8.53 -46.22 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.84 Total: -0.74 kcal Atomic # 6 Polarization: 18.67 SS G_CDS: -3.00 Total: 15.67 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 0.12 Total: -60.57 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.17 Total: -22.78 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.69 -8.53 -46.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127033071.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.326 kcal (2) G-P(sol) polarization free energy of solvation -37.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds