Wall clock time and date at job start Wed Apr 1 2020 04:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.46956 * 2 1 4 4 C 1.46499 * 120.00044 * 269.99630 * 3 2 1 5 5 C 1.50701 * 109.47073 * 270.00336 * 4 3 2 6 6 H 1.08000 * 120.00315 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00295 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99505 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00354 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47215 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47183 * 119.99789 * 9 7 5 12 12 H 1.48505 * 109.46981 * 240.00032 * 9 7 5 13 13 C 1.34780 * 120.00117 * 90.00049 * 3 2 1 14 14 O 1.21282 * 119.99895 * 179.97438 * 13 3 2 15 15 C 1.50695 * 119.99885 * 359.97438 * 13 3 2 16 16 N 1.46499 * 109.46988 * 180.02562 * 15 13 3 17 17 C 1.35694 * 119.86126 * 269.97514 * 16 15 13 18 18 N 1.30075 * 123.05063 * 180.02562 * 17 16 15 19 19 C 1.34232 * 121.87683 * 0.02562 * 18 17 16 20 20 C 1.40377 * 119.18325 * 359.97438 * 19 18 17 21 21 C 1.40728 * 107.27427 * 180.02562 * 20 19 18 22 22 N 1.30451 * 108.32166 * 359.71943 * 21 20 19 23 23 N 1.35830 * 134.22906 * 179.97438 * 19 18 17 24 24 C 1.46506 * 125.84440 * 359.97438 * 23 19 18 25 25 C 1.52997 * 109.47289 * 119.99714 * 24 23 19 26 26 C 1.52992 * 109.46999 * 240.00182 * 24 23 19 27 27 C 1.35370 * 119.86316 * 90.00110 * 16 15 13 28 28 O 1.21828 * 121.24395 * 359.97438 * 27 16 15 29 29 H 1.08994 * 109.47207 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46893 * 300.00299 * 1 2 3 31 31 H 1.08999 * 109.46660 * 60.00299 * 1 2 3 32 32 H 1.09000 * 109.47507 * 239.99473 * 2 1 3 33 33 H 1.08999 * 109.46660 * 119.99701 * 2 1 3 34 34 H 1.09004 * 109.47264 * 29.99852 * 4 3 2 35 35 H 1.08997 * 109.47631 * 150.00201 * 4 3 2 36 36 H 0.96998 * 119.99877 * 180.02562 * 8 7 5 37 37 H 1.08994 * 109.47305 * 59.99977 * 15 13 3 38 38 H 1.08998 * 109.47027 * 300.00092 * 15 13 3 39 39 H 1.08000 * 118.47019 * 0.02562 * 17 16 15 40 40 H 1.07997 * 125.84145 * 180.02562 * 21 20 19 41 41 H 1.08998 * 109.46566 * 359.97438 * 24 23 19 42 42 H 1.09002 * 109.47153 * 179.97438 * 25 24 23 43 43 H 1.09001 * 109.46832 * 60.00146 * 25 24 23 44 44 H 1.09004 * 109.47261 * 300.00128 * 25 24 23 45 45 H 1.09001 * 109.47066 * 299.99819 * 26 24 23 46 46 H 1.08996 * 109.47747 * 59.99485 * 26 24 23 47 47 H 1.09002 * 109.47103 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3430 1.2308 -1.0957 7 6 4.1493 2.3895 -2.8779 8 7 3.3493 3.1256 -3.6181 9 14 5.9133 2.0954 -3.4175 10 1 6.6010 1.2404 -2.4168 11 1 5.9203 1.4161 -4.7380 12 1 6.6211 3.3963 -3.5262 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9913 1.3064 2.4723 16 7 2.3082 2.2041 3.5858 17 6 3.5636 2.2256 4.1001 18 7 3.9126 2.9969 5.0876 19 6 3.0434 3.8353 5.6737 20 6 1.7196 3.8834 5.2092 21 6 1.0368 4.8337 5.9909 22 7 1.8724 5.3220 6.8655 23 7 3.1293 4.7284 6.6935 24 6 4.3296 5.0171 7.4823 25 6 4.6945 6.4954 7.3333 26 6 4.0592 4.7044 8.9553 27 6 1.3471 3.0085 4.0976 28 8 0.2143 3.0036 3.6494 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8935 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5818 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 3.6752 3.5155 -4.4443 37 1 2.6211 0.4187 2.5302 38 1 0.9432 1.0126 2.5298 39 1 4.3076 1.5718 3.6696 40 1 -0.0027 5.1080 5.8879 41 1 5.1552 4.4010 7.1260 42 1 5.5873 6.7103 7.9206 43 1 3.8686 7.1111 7.6898 44 1 4.8871 6.7182 6.2838 45 1 3.2334 5.3200 9.3118 46 1 3.7993 3.6512 9.0615 47 1 4.9524 4.9187 9.5421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127033071.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:50 Heat of formation + Delta-G solvation = 14.963548 kcal Electronic energy + Delta-G solvation = -30875.174484 eV Core-core repulsion = 26673.436228 eV Total energy + Delta-G solvation = -4201.738255 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.24270 -41.53422 -40.26074 -38.62389 -37.04382 -36.64939 -35.57038 -34.84762 -31.77910 -31.55065 -30.96549 -30.16445 -28.30397 -28.24859 -25.79540 -25.17499 -24.42213 -24.01039 -23.64613 -21.17680 -20.32465 -19.61572 -19.19420 -18.66992 -18.42904 -18.14448 -17.15627 -16.95953 -16.60571 -16.31695 -16.11959 -15.92009 -15.58313 -15.49035 -15.17551 -14.83176 -14.75156 -14.55423 -14.42611 -14.10759 -13.80271 -13.62992 -13.37536 -13.28756 -13.21282 -13.13133 -12.99000 -12.68540 -12.64916 -12.49401 -12.41638 -12.14279 -11.90779 -11.88384 -11.72871 -11.65863 -11.45992 -11.19406 -10.67667 -10.64217 -10.12130 -9.48576 -9.47804 -8.20868 -6.35675 -0.37338 0.55513 0.93030 1.27661 1.35438 1.39500 1.41891 1.53458 1.70078 2.20816 2.40816 2.56355 2.86785 3.10020 3.11877 3.40625 3.53133 3.62081 3.78882 3.89857 3.95043 4.04128 4.12058 4.15101 4.25136 4.28962 4.45443 4.62271 4.64726 4.67325 4.74297 4.76853 4.91797 5.00069 5.00723 5.06893 5.12570 5.17988 5.22867 5.29322 5.35086 5.42895 5.58567 5.72729 5.83283 6.05960 6.26233 6.58884 6.67819 6.69626 6.77004 7.26370 7.40865 8.87093 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013076 B = 0.002852 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.756862 B = 9814.790845 C =11074.819258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.096 3.904 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.534 4.534 6 H 0.066 0.934 7 C 0.002 3.998 8 N -0.934 5.934 9 Si 0.970 3.030 10 H -0.256 1.256 11 H -0.273 1.273 12 H -0.288 1.288 13 C 0.483 3.517 14 O -0.593 6.593 15 C 0.085 3.915 16 N -0.526 5.526 17 C 0.434 3.566 18 N -0.545 5.545 19 C 0.332 3.668 20 C -0.374 4.374 21 C 0.119 3.881 22 N -0.280 5.280 23 N -0.347 5.347 24 C 0.145 3.855 25 C -0.156 4.156 26 C -0.150 4.150 27 C 0.571 3.429 28 O -0.554 6.554 29 H 0.100 0.900 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.021 0.979 35 H -0.013 1.013 36 H 0.265 0.735 37 H 0.188 0.812 38 H 0.137 0.863 39 H 0.260 0.740 40 H 0.212 0.788 41 H 0.118 0.882 42 H 0.108 0.892 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.124 -7.691 23.371 24.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.026 4.026 3 N -0.325 5.325 4 C 0.141 3.859 5 C -0.573 4.573 6 H 0.085 0.915 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.795 3.205 10 H -0.180 1.180 11 H -0.199 1.199 12 H -0.215 1.215 13 C 0.270 3.730 14 O -0.474 6.474 15 C -0.040 4.040 16 N -0.245 5.245 17 C 0.146 3.854 18 N -0.271 5.271 19 C 0.094 3.906 20 C -0.390 4.390 21 C -0.071 4.071 22 N -0.098 5.098 23 N -0.131 5.131 24 C 0.046 3.954 25 C -0.213 4.213 26 C -0.208 4.208 27 C 0.367 3.633 28 O -0.432 6.432 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.099 0.901 33 H 0.137 0.863 34 H 0.039 0.961 35 H 0.005 0.995 36 H 0.074 0.926 37 H 0.205 0.795 38 H 0.155 0.845 39 H 0.276 0.724 40 H 0.228 0.772 41 H 0.136 0.864 42 H 0.126 0.874 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.569 -5.996 24.452 25.307 hybrid contribution -0.513 0.213 -2.135 2.206 sum 2.057 -5.783 22.317 23.146 Atomic orbital electron populations 1.22204 0.95449 1.03606 1.01261 1.21907 0.94655 0.80784 1.05234 1.48242 1.63128 1.15403 1.05775 1.18711 0.95769 0.91128 0.80336 1.21749 0.97470 1.31710 1.06333 0.91550 1.25942 1.02509 0.94555 0.96651 1.70090 1.37935 1.34552 1.14867 0.85322 0.78832 0.77838 0.78542 1.17950 1.19875 1.21466 1.21357 0.77935 0.86829 0.86829 1.90713 1.48321 1.20482 1.87863 1.22182 1.08284 0.92886 0.80628 1.46342 1.11398 1.36436 1.30360 1.25752 0.84410 0.90426 0.84784 1.67259 1.33262 1.11846 1.14723 1.19324 0.90314 0.91023 0.89981 1.21222 0.97203 1.12549 1.07998 1.23799 1.00707 0.92088 0.90484 1.77124 0.88876 1.20427 1.23370 1.49032 1.09879 1.29099 1.25111 1.21858 0.81971 0.99324 0.92249 1.22121 1.03588 0.93266 1.02346 1.22084 1.04264 1.01979 0.92470 1.17706 0.84373 0.79249 0.81949 1.90828 1.20906 1.68126 1.63292 0.88152 0.92815 0.94880 0.90100 0.86308 0.96143 0.99467 0.92626 0.79513 0.84496 0.72418 0.77176 0.86435 0.87357 0.91932 0.93796 0.91988 0.92679 0.87525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.87 10.24 71.98 0.74 -3.14 16 2 C 0.10 2.43 5.93 86.38 0.51 2.95 16 3 N -0.59 -23.05 2.46 -826.15 -2.03 -25.08 16 4 C 0.26 13.77 5.16 85.63 0.44 14.21 16 5 C -0.53 -29.24 9.39 25.60 0.24 -29.00 16 6 H 0.07 3.44 7.81 -2.91 -0.02 3.42 16 7 C 0.00 0.10 5.46 84.66 0.46 0.56 16 8 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 9 Si 0.97 43.39 29.54 68.60 2.03 45.41 16 10 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 11 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 12 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 13 C 0.48 18.34 7.74 87.65 0.68 19.02 16 14 O -0.59 -29.89 16.01 -3.04 -0.05 -29.94 16 15 C 0.08 1.96 4.41 85.63 0.38 2.34 16 16 N -0.53 -14.10 2.09 -652.63 -1.36 -15.46 16 17 C 0.43 9.27 11.42 180.18 2.06 11.33 16 18 N -0.55 -13.66 10.37 -196.50 -2.04 -15.70 16 19 C 0.33 9.57 7.98 133.86 1.07 10.64 16 20 C -0.37 -12.00 6.39 -20.06 -0.13 -12.12 16 21 C 0.12 3.40 12.04 85.51 1.03 4.43 16 22 N -0.28 -7.67 12.31 -56.66 -0.70 -8.37 16 23 N -0.35 -8.91 3.30 -324.71 -1.07 -9.98 16 24 C 0.15 2.58 3.69 44.99 0.17 2.75 16 25 C -0.16 -2.48 9.45 71.98 0.68 -1.80 16 26 C -0.15 -1.99 9.44 71.98 0.68 -1.31 16 27 C 0.57 19.53 7.66 86.24 0.66 20.19 16 28 O -0.55 -22.09 16.86 -4.76 -0.08 -22.17 16 29 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.05 1.25 7.22 -2.39 -0.02 1.24 16 31 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 2.19 8.07 -2.39 -0.02 2.17 16 33 H 0.12 1.74 6.44 -2.39 -0.02 1.73 16 34 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 35 H -0.01 -0.81 7.42 -2.39 -0.02 -0.83 16 36 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 37 H 0.19 1.83 7.26 -2.39 -0.02 1.81 16 38 H 0.14 2.97 6.51 -2.39 -0.02 2.96 16 39 H 0.26 2.62 8.00 -2.91 -0.02 2.59 16 40 H 0.21 4.93 8.06 -2.91 -0.02 4.91 16 41 H 0.12 1.91 8.07 -2.39 -0.02 1.89 16 42 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 45 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -90.17 400.32 5.63 -84.54 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.98 Total: 11.90 kcal Atomic # 6 Polarization: 31.39 SS G_CDS: 9.66 Total: 41.06 kcal Atomic # 7 Polarization: -123.88 SS G_CDS: -6.92 Total: -130.79 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -0.13 Total: -52.11 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -90.17 5.63 -84.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127033071.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.500 kcal (2) G-P(sol) polarization free energy of solvation -90.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds