Wall clock time and date at job start Wed Apr 1 2020 06:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36053 * 117.00112 * 2 1 4 4 C 1.38630 * 119.98848 * 0.02562 * 3 2 1 5 5 C 1.38152 * 120.04386 * 179.97438 * 4 3 2 6 6 C 1.38864 * 120.01633 * 359.97438 * 5 4 3 7 7 N 1.39926 * 120.00937 * 179.97438 * 6 5 4 8 8 C 1.46950 * 111.00199 * 123.82533 * 7 6 5 9 9 C 1.53051 * 109.36498 * 176.81346 * 8 7 6 10 10 N 1.46953 * 109.36651 * 58.39919 * 9 8 7 11 11 C 1.46907 * 111.00084 * 176.81173 * 10 9 8 12 12 C 1.52993 * 109.47109 * 189.88023 * 11 10 9 13 13 H 1.09003 * 109.47100 * 303.82617 * 12 11 10 14 14 C 1.47198 * 109.47540 * 63.82201 * 12 11 10 15 15 N 9.23015 * 124.78676 * 209.08857 * 3 1 2 16 16 C 1.53002 * 109.47141 * 183.82790 * 12 11 10 17 17 C 1.50697 * 109.47293 * 174.99876 * 16 12 11 18 18 H 1.08001 * 119.99797 * 0.02562 * 17 16 12 19 19 C 1.37878 * 120.00163 * 179.97438 * 17 16 12 20 20 N 1.31516 * 120.00257 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 119.99948 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47203 * 90.00065 * 21 19 17 23 23 H 1.48496 * 109.47500 * 210.00159 * 21 19 17 24 24 H 1.48506 * 109.47339 * 330.00200 * 21 19 17 25 25 C 1.46958 * 110.88029 * 300.67915 * 10 9 8 26 26 C 1.46955 * 110.99984 * 0.02562 * 7 6 5 27 27 C 1.38843 * 119.98036 * 0.02562 * 6 5 4 28 28 C 1.38291 * 119.95739 * 359.97438 * 27 6 5 29 29 F 1.35103 * 120.01228 * 179.97438 * 28 27 6 30 30 H 1.09000 * 109.46819 * 60.00414 * 1 2 3 31 31 H 1.09001 * 109.47195 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47764 * 300.00397 * 1 2 3 33 33 H 1.08002 * 119.97731 * 359.95529 * 4 3 2 34 34 H 1.07990 * 119.98759 * 180.02562 * 5 4 3 35 35 H 1.09006 * 109.49029 * 296.77547 * 8 7 6 36 36 H 1.09002 * 109.49392 * 56.84182 * 8 7 6 37 37 H 1.08999 * 109.49000 * 298.42893 * 9 8 7 38 38 H 1.09007 * 109.50431 * 178.37684 * 9 8 7 39 39 H 1.09000 * 109.46848 * 309.88139 * 11 10 9 40 40 H 1.08995 * 109.47100 * 69.87715 * 11 10 9 41 41 H 1.09007 * 109.46919 * 294.99801 * 16 12 11 42 42 H 1.08996 * 109.47155 * 54.99535 * 16 12 11 43 43 H 0.96997 * 120.00451 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.48674 * 299.35304 * 25 10 9 45 45 H 1.09004 * 109.48611 * 179.28993 * 25 10 9 46 46 H 1.08998 * 109.49534 * 303.16082 * 26 7 6 47 47 H 1.09002 * 109.48592 * 63.20209 * 26 7 6 48 48 H 1.07995 * 120.02369 * 180.27034 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2122 0.0000 4 6 1.2914 2.3747 0.0005 5 6 1.9174 3.6063 0.0011 6 6 3.3041 3.6807 0.0016 7 7 3.9380 4.9281 0.0016 8 6 4.8570 5.0519 1.1416 9 6 5.5873 6.3945 1.0613 10 7 4.6028 7.4855 1.0613 11 6 5.2683 8.7952 1.0613 12 6 4.2325 9.8936 1.3087 13 1 3.4441 9.8250 0.5591 14 6 3.6500 9.7256 2.6501 15 7 3.2016 9.5955 3.6854 16 6 4.9086 11.2629 1.2140 17 6 3.8682 12.3463 1.3355 18 1 2.8287 12.0844 1.4674 19 6 4.2434 13.6718 1.2791 20 7 3.3355 14.6174 1.3856 21 14 6.0414 14.1247 1.0530 22 1 6.3458 14.2345 -0.3963 23 1 6.3112 15.4261 1.7153 24 1 6.8969 13.0736 1.6602 25 6 3.6838 7.3617 -0.0788 26 6 2.9535 6.0191 0.0016 27 6 4.0613 2.5169 0.0011 28 6 3.4337 1.2846 0.0005 29 9 4.1694 0.1515 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.2129 2.3176 0.0002 34 1 1.3282 4.5113 0.0019 35 1 4.2912 5.0008 2.0720 36 1 5.5839 4.2402 1.1127 37 1 6.1747 6.4347 0.1440 38 1 6.2484 6.5012 1.9214 39 1 6.0203 8.8205 1.8499 40 1 5.7481 8.9589 0.0964 41 1 5.6358 11.3655 2.0196 42 1 5.4156 11.3520 0.2533 43 1 3.5995 15.5499 1.3464 44 1 4.2496 7.4129 -1.0091 45 1 2.9570 8.1735 -0.0498 46 1 2.2926 5.9127 -0.8585 47 1 2.3660 5.9787 0.9188 48 1 5.1397 2.5739 0.0059 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151360199.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:18 Heat of formation + Delta-G solvation = -8.617436 kcal Electronic energy + Delta-G solvation = -29726.964854 eV Core-core repulsion = 25504.284089 eV Total energy + Delta-G solvation = -4222.680765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -49.06469 -40.85970 -39.67925 -38.09860 -36.49385 -34.93474 -33.56578 -31.98568 -31.80928 -30.63077 -29.89450 -28.20567 -27.15551 -25.58478 -24.55024 -22.84231 -22.42478 -21.83229 -21.45952 -20.04754 -18.84453 -17.64048 -17.28698 -16.94310 -16.72399 -16.48701 -16.32685 -15.39396 -15.36354 -15.19546 -15.07297 -14.82173 -14.72129 -14.67377 -14.45327 -14.05757 -13.42525 -13.36096 -13.11075 -12.87696 -12.63275 -12.50535 -12.41669 -12.26168 -12.17748 -11.81864 -11.66920 -11.59407 -11.48204 -11.37165 -11.28304 -11.22317 -11.05473 -10.67968 -10.39513 -9.96441 -9.79729 -9.70213 -9.35581 -9.18662 -8.64882 -8.38149 -7.91545 -6.13719 -4.14603 0.74966 0.89054 2.77951 3.07193 3.23241 3.32616 3.32942 3.40923 3.63193 3.72420 3.81728 3.94958 4.27678 4.35364 4.51382 4.55753 4.71884 4.72903 4.73077 4.80501 4.85936 4.92969 5.04655 5.05591 5.07558 5.17795 5.20353 5.21201 5.33582 5.43220 5.46254 5.51177 5.58579 5.66822 5.72437 5.74570 5.82503 5.84117 5.88934 6.11112 6.15638 6.25355 6.60799 6.73296 6.87809 6.93596 6.97549 7.01305 7.09373 7.60242 8.37030 8.50752 8.89509 9.46020 10.99288 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.024577 B = 0.001930 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.983768 B =14503.332153 C =15036.007903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.065 3.935 4 C -0.152 4.152 5 C -0.140 4.140 6 C 0.112 3.888 7 N -0.486 5.486 8 C 0.060 3.940 9 C 0.056 3.944 10 N -0.543 5.543 11 C 0.061 3.939 12 C 0.020 3.980 13 H 0.105 0.895 14 C 0.253 3.747 15 N -0.471 5.471 16 C -0.005 4.005 17 C -0.528 4.528 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.896 5.896 21 Si 0.877 3.123 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.264 1.264 25 C 0.050 3.950 26 C 0.052 3.948 27 C -0.140 4.140 28 C 0.095 3.905 29 F -0.132 7.132 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.025 0.975 42 H 0.032 0.968 43 H 0.265 0.735 44 H 0.049 0.951 45 H 0.093 0.907 46 H 0.088 0.912 47 H 0.058 0.942 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.482 -27.531 -6.686 28.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.018 3.982 4 C -0.171 4.171 5 C -0.161 4.161 6 C 0.014 3.986 7 N -0.202 5.202 8 C -0.066 4.066 9 C -0.072 4.072 10 N -0.268 5.268 11 C -0.068 4.068 12 C -0.002 4.002 13 H 0.123 0.877 14 C -0.064 4.064 15 N -0.147 5.147 16 C -0.044 4.044 17 C -0.566 4.566 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.534 5.534 21 Si 0.704 3.296 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.189 1.189 25 C -0.078 4.078 26 C -0.075 4.075 27 C -0.161 4.161 28 C 0.075 3.925 29 F -0.110 7.110 30 H 0.075 0.925 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.051 0.949 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.111 0.889 46 H 0.106 0.894 47 H 0.076 0.924 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.030 -27.686 -5.097 28.170 hybrid contribution 0.903 0.499 -0.691 1.241 sum -0.128 -27.187 -5.788 27.796 Atomic orbital electron populations 1.23092 0.78059 1.04183 1.01470 1.86137 1.21569 1.25752 1.89237 1.18891 0.90723 0.85653 1.02898 1.21000 1.00209 0.91083 1.04852 1.21241 0.93548 0.98177 1.03096 1.18611 0.91473 0.89761 0.98779 1.59336 1.19042 1.00364 1.41448 1.22350 0.95271 0.98073 0.90873 1.22159 0.93770 0.89604 1.01659 1.62185 1.19152 1.02602 1.42853 1.22255 0.96036 0.86744 1.01732 1.18986 0.97434 0.96833 0.86912 0.87742 1.28665 0.92645 0.90681 0.94429 1.80989 1.09941 1.11179 1.12634 1.19642 0.96987 0.90040 0.97765 1.21005 0.94790 0.89644 1.51121 0.90806 1.24995 0.97363 0.96449 0.94336 1.69901 1.33483 1.00200 1.49841 0.86818 0.85819 0.78247 0.78673 1.20052 1.21307 1.18857 1.22287 0.96627 0.96599 0.92294 1.22414 0.93555 0.89434 1.02053 1.20538 1.00916 0.89007 1.05681 1.16704 0.85840 0.82600 1.07397 1.91503 1.76596 1.48793 1.94140 0.92487 0.88045 0.92487 0.84393 0.84293 0.92672 0.89705 0.93543 0.89711 0.90026 0.92586 0.95640 0.94936 0.92544 0.93299 0.88860 0.89407 0.92426 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.04 10.36 -19.91 -0.21 -3.25 16 3 C 0.06 0.65 6.69 -39.20 -0.26 0.38 16 4 C -0.15 -1.25 9.03 -39.47 -0.36 -1.61 16 5 C -0.14 -1.21 8.82 -39.38 -0.35 -1.55 16 6 C 0.11 1.07 5.64 -83.71 -0.47 0.59 16 7 N -0.49 -4.65 4.76 -170.91 -0.81 -5.47 16 8 C 0.06 0.55 5.38 -3.77 -0.02 0.53 16 9 C 0.06 0.55 5.61 -3.77 -0.02 0.53 16 10 N -0.54 -6.37 4.38 -234.46 -1.03 -7.40 16 11 C 0.06 0.78 4.33 -3.82 -0.02 0.77 16 12 C 0.02 0.34 2.12 -93.41 -0.20 0.14 16 13 H 0.10 1.65 6.32 -51.93 -0.33 1.32 16 14 C 0.25 5.03 13.64 -20.77 -0.28 4.75 16 15 N -0.47 -10.38 18.54 42.14 0.78 -9.60 16 16 C -0.01 -0.11 3.49 -27.88 -0.10 -0.21 16 17 C -0.53 -13.87 9.15 -34.44 -0.32 -14.19 16 18 H 0.07 2.13 7.84 -52.49 -0.41 1.72 16 19 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 20 N -0.90 -26.65 13.96 55.43 0.77 -25.88 16 21 Si 0.88 20.28 27.47 -169.99 -4.67 15.61 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 25 C 0.05 0.53 5.41 -3.77 -0.02 0.51 16 26 C 0.05 0.49 4.30 -3.77 -0.02 0.48 16 27 C -0.14 -1.34 9.17 -39.34 -0.36 -1.70 16 28 C 0.10 1.01 7.31 -39.32 -0.29 0.73 16 29 F -0.13 -1.55 17.11 2.25 0.04 -1.51 16 30 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 33 H 0.14 0.80 6.29 -52.49 -0.33 0.47 16 34 H 0.14 1.03 5.80 -52.49 -0.30 0.72 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.65 6.82 -51.93 -0.35 0.30 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 39 H 0.08 1.04 8.03 -51.93 -0.42 0.62 16 40 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 41 H 0.03 0.54 7.20 -51.93 -0.37 0.16 16 42 H 0.03 0.62 7.57 -51.93 -0.39 0.23 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 1.01 6.26 -51.93 -0.33 0.69 16 46 H 0.09 0.71 7.17 -51.93 -0.37 0.33 16 47 H 0.06 0.59 7.58 -51.93 -0.39 0.19 16 48 H 0.14 1.19 7.17 -52.49 -0.38 0.82 16 LS Contribution 389.14 15.07 5.86 5.86 Total: -1.00 -32.60 389.14 -8.31 -40.91 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -6.87 Total: -2.42 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -2.18 Total: -6.87 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.29 Total: -48.34 kcal Atomic # 8 Polarization: -3.04 SS G_CDS: -0.21 Total: -3.25 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.67 Total: 15.61 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.60 -8.31 -40.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151360199.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.296 kcal (2) G-P(sol) polarization free energy of solvation -32.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds