Wall clock time and date at job start Wed Apr 1 2020 06:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36053 * 117.00112 * 2 1 4 4 C 1.38630 * 119.98848 * 0.02562 * 3 2 1 5 5 C 1.38152 * 120.04386 * 179.97438 * 4 3 2 6 6 C 1.38864 * 120.01633 * 359.97438 * 5 4 3 7 7 N 1.39926 * 120.00937 * 179.97438 * 6 5 4 8 8 C 1.46950 * 111.00199 * 123.82533 * 7 6 5 9 9 C 1.53051 * 109.36498 * 176.81346 * 8 7 6 10 10 N 1.46953 * 109.36651 * 58.39919 * 9 8 7 11 11 C 1.46907 * 111.00084 * 176.81173 * 10 9 8 12 12 C 1.52993 * 109.47109 * 189.88023 * 11 10 9 13 13 H 1.09003 * 109.47100 * 303.82617 * 12 11 10 14 14 C 1.47198 * 109.47540 * 63.82201 * 12 11 10 15 15 N 9.23015 * 124.78676 * 209.08857 * 3 1 2 16 16 C 1.53002 * 109.47141 * 183.82790 * 12 11 10 17 17 C 1.50697 * 109.47293 * 174.99876 * 16 12 11 18 18 H 1.08001 * 119.99797 * 0.02562 * 17 16 12 19 19 C 1.37878 * 120.00163 * 179.97438 * 17 16 12 20 20 N 1.31516 * 120.00257 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 119.99948 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47203 * 90.00065 * 21 19 17 23 23 H 1.48496 * 109.47500 * 210.00159 * 21 19 17 24 24 H 1.48506 * 109.47339 * 330.00200 * 21 19 17 25 25 C 1.46958 * 110.88029 * 300.67915 * 10 9 8 26 26 C 1.46955 * 110.99984 * 0.02562 * 7 6 5 27 27 C 1.38843 * 119.98036 * 0.02562 * 6 5 4 28 28 C 1.38291 * 119.95739 * 359.97438 * 27 6 5 29 29 F 1.35103 * 120.01228 * 179.97438 * 28 27 6 30 30 H 1.09000 * 109.46819 * 60.00414 * 1 2 3 31 31 H 1.09001 * 109.47195 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47764 * 300.00397 * 1 2 3 33 33 H 1.08002 * 119.97731 * 359.95529 * 4 3 2 34 34 H 1.07990 * 119.98759 * 180.02562 * 5 4 3 35 35 H 1.09006 * 109.49029 * 296.77547 * 8 7 6 36 36 H 1.09002 * 109.49392 * 56.84182 * 8 7 6 37 37 H 1.08999 * 109.49000 * 298.42893 * 9 8 7 38 38 H 1.09007 * 109.50431 * 178.37684 * 9 8 7 39 39 H 1.09000 * 109.46848 * 309.88139 * 11 10 9 40 40 H 1.08995 * 109.47100 * 69.87715 * 11 10 9 41 41 H 1.09007 * 109.46919 * 294.99801 * 16 12 11 42 42 H 1.08996 * 109.47155 * 54.99535 * 16 12 11 43 43 H 0.96997 * 120.00451 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.48674 * 299.35304 * 25 10 9 45 45 H 1.09004 * 109.48611 * 179.28993 * 25 10 9 46 46 H 1.08998 * 109.49534 * 303.16082 * 26 7 6 47 47 H 1.09002 * 109.48592 * 63.20209 * 26 7 6 48 48 H 1.07995 * 120.02369 * 180.27034 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2122 0.0000 4 6 1.2914 2.3747 0.0005 5 6 1.9174 3.6063 0.0011 6 6 3.3041 3.6807 0.0016 7 7 3.9380 4.9281 0.0016 8 6 4.8570 5.0519 1.1416 9 6 5.5873 6.3945 1.0613 10 7 4.6028 7.4855 1.0613 11 6 5.2683 8.7952 1.0613 12 6 4.2325 9.8936 1.3087 13 1 3.4441 9.8250 0.5591 14 6 3.6500 9.7256 2.6501 15 7 3.2016 9.5955 3.6854 16 6 4.9086 11.2629 1.2140 17 6 3.8682 12.3463 1.3355 18 1 2.8287 12.0844 1.4674 19 6 4.2434 13.6718 1.2791 20 7 3.3355 14.6174 1.3856 21 14 6.0414 14.1247 1.0530 22 1 6.3458 14.2345 -0.3963 23 1 6.3112 15.4261 1.7153 24 1 6.8969 13.0736 1.6602 25 6 3.6838 7.3617 -0.0788 26 6 2.9535 6.0191 0.0016 27 6 4.0613 2.5169 0.0011 28 6 3.4337 1.2846 0.0005 29 9 4.1694 0.1515 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.2129 2.3176 0.0002 34 1 1.3282 4.5113 0.0019 35 1 4.2912 5.0008 2.0720 36 1 5.5839 4.2402 1.1127 37 1 6.1747 6.4347 0.1440 38 1 6.2484 6.5012 1.9214 39 1 6.0203 8.8205 1.8499 40 1 5.7481 8.9589 0.0964 41 1 5.6358 11.3655 2.0196 42 1 5.4156 11.3520 0.2533 43 1 3.5995 15.5499 1.3464 44 1 4.2496 7.4129 -1.0091 45 1 2.9570 8.1735 -0.0498 46 1 2.2926 5.9127 -0.8585 47 1 2.3660 5.9787 0.9188 48 1 5.1397 2.5739 0.0059 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151360199.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:16 Heat of formation + Delta-G solvation = -29.975536 kcal Electronic energy + Delta-G solvation = -29727.891011 eV Core-core repulsion = 25504.284089 eV Total energy + Delta-G solvation = -4223.606922 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.87878 -41.56243 -40.40008 -39.04085 -37.68677 -36.05789 -35.23531 -33.60058 -32.57088 -31.35661 -30.77506 -29.19905 -28.07017 -26.62079 -25.29221 -23.95653 -23.31888 -22.97379 -22.60471 -20.82521 -19.52157 -18.90546 -18.35233 -18.25851 -17.82361 -17.21514 -17.14620 -16.41301 -16.07285 -16.06273 -15.90397 -15.83423 -15.68545 -15.54708 -15.35148 -15.11971 -14.85294 -14.53677 -14.24007 -13.94634 -13.83369 -13.65493 -13.41165 -13.29042 -13.10318 -12.92987 -12.85672 -12.65765 -12.43289 -12.27888 -12.22039 -12.16596 -12.13880 -11.98720 -11.73849 -11.56426 -11.43184 -11.14997 -10.71204 -10.40706 -9.90910 -9.22517 -8.62126 -8.22897 -6.28222 0.05381 0.19146 1.43811 1.47128 1.56912 2.08250 2.16055 2.21379 2.38070 2.42525 2.70165 2.89829 3.13787 3.25658 3.35023 3.64622 3.81400 3.92863 3.96383 4.08606 4.16212 4.24435 4.33152 4.37052 4.38724 4.41571 4.43771 4.45948 4.52180 4.62682 4.67143 4.72885 4.77043 4.80404 4.90734 4.95205 4.96078 5.02514 5.07768 5.09946 5.15553 5.25710 5.44090 5.47132 5.65587 5.88693 6.00031 6.13748 6.17531 6.28613 6.33648 6.79452 6.93868 7.36183 8.93868 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.024577 B = 0.001930 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.983768 B =14503.332153 C =15036.007903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.057 3.943 4 C -0.148 4.148 5 C -0.140 4.140 6 C 0.101 3.899 7 N -0.486 5.486 8 C 0.062 3.938 9 C 0.060 3.940 10 N -0.559 5.559 11 C 0.071 3.929 12 C 0.026 3.974 13 H 0.114 0.886 14 C 0.264 3.736 15 N -0.517 5.517 16 C -0.004 4.004 17 C -0.528 4.528 18 H 0.029 0.971 19 C 0.002 3.998 20 N -0.954 5.954 21 Si 0.948 3.052 22 H -0.257 1.257 23 H -0.297 1.297 24 H -0.237 1.237 25 C 0.050 3.950 26 C 0.055 3.945 27 C -0.139 4.139 28 C 0.069 3.931 29 F -0.144 7.144 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.163 0.837 34 H 0.152 0.848 35 H 0.040 0.960 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.027 0.973 42 H 0.062 0.938 43 H 0.264 0.736 44 H 0.057 0.943 45 H 0.086 0.914 46 H 0.102 0.898 47 H 0.047 0.953 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.160 -28.737 -8.012 29.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.010 3.990 4 C -0.167 4.167 5 C -0.160 4.160 6 C 0.003 3.997 7 N -0.202 5.202 8 C -0.064 4.064 9 C -0.068 4.068 10 N -0.284 5.284 11 C -0.057 4.057 12 C 0.004 3.996 13 H 0.132 0.868 14 C -0.052 4.052 15 N -0.194 5.194 16 C -0.043 4.043 17 C -0.566 4.566 18 H 0.047 0.953 19 C -0.195 4.195 20 N -0.595 5.595 21 Si 0.771 3.229 22 H -0.182 1.182 23 H -0.224 1.224 24 H -0.160 1.160 25 C -0.078 4.078 26 C -0.072 4.072 27 C -0.160 4.160 28 C 0.049 3.951 29 F -0.123 7.123 30 H 0.088 0.912 31 H 0.136 0.864 32 H 0.085 0.915 33 H 0.181 0.819 34 H 0.170 0.830 35 H 0.058 0.942 36 H 0.118 0.882 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.045 0.955 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.104 0.896 46 H 0.120 0.880 47 H 0.065 0.935 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.611 -28.937 -6.432 29.650 hybrid contribution 0.221 0.816 -0.263 0.885 sum 0.832 -28.122 -6.695 28.920 Atomic orbital electron populations 1.23391 0.75962 1.05756 1.02559 1.86111 1.23852 1.25915 1.89210 1.19088 0.90729 0.86384 1.02761 1.21250 1.01391 0.90270 1.03832 1.21468 0.93447 0.98874 1.02259 1.18706 0.91937 0.89685 0.99333 1.59372 1.19066 1.00302 1.41454 1.22356 0.95373 0.98510 0.90144 1.22182 0.93409 0.88810 1.02406 1.62117 1.19958 1.02606 1.43761 1.22110 0.94504 0.85944 1.03167 1.19087 0.98551 0.96654 0.85329 0.86797 1.29371 0.91611 0.89376 0.94818 1.80987 1.11474 1.12720 1.14223 1.19591 0.95593 0.89922 0.99149 1.21387 0.94348 0.91410 1.49491 0.95259 1.26043 1.02645 0.96475 0.94338 1.70088 1.36311 1.00640 1.52438 0.85698 0.79693 0.77963 0.79571 1.18191 1.22406 1.15952 1.22296 0.96423 0.96843 0.92235 1.22394 0.93545 0.89042 1.02180 1.20612 1.01444 0.88683 1.05236 1.17000 0.86453 0.82627 1.09009 1.91461 1.76943 1.49476 1.94430 0.91219 0.86413 0.91464 0.81947 0.83036 0.94208 0.88194 0.92573 0.89085 0.89525 0.90140 0.95457 0.91963 0.92732 0.92467 0.89608 0.87953 0.93501 0.82870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.27 16 2 O -0.34 -6.29 10.36 -94.15 -0.98 -7.26 16 3 C 0.06 1.09 6.69 22.52 0.15 1.24 16 4 C -0.15 -2.19 9.03 22.34 0.20 -1.99 16 5 C -0.14 -2.18 8.82 22.40 0.20 -1.98 16 6 C 0.10 1.78 5.64 38.14 0.22 2.00 16 7 N -0.49 -8.33 4.76 -694.65 -3.31 -11.64 16 8 C 0.06 1.02 5.38 86.31 0.46 1.48 16 9 C 0.06 0.99 5.61 86.31 0.48 1.48 16 10 N -0.56 -11.74 4.38 -895.71 -3.92 -15.66 16 11 C 0.07 1.60 4.33 86.30 0.37 1.98 16 12 C 0.03 0.81 2.12 -12.60 -0.03 0.78 16 13 H 0.11 3.43 6.32 -2.39 -0.02 3.41 16 14 C 0.26 10.39 13.64 89.44 1.22 11.61 16 15 N -0.52 -22.95 18.54 20.00 0.37 -22.58 16 16 C 0.00 -0.14 3.49 29.85 0.10 -0.03 16 17 C -0.53 -27.85 9.15 25.60 0.23 -27.61 16 18 H 0.03 1.75 7.84 -2.91 -0.02 1.73 16 19 C 0.00 0.09 5.47 84.65 0.46 0.55 16 20 N -0.95 -58.35 13.96 21.45 0.30 -58.05 16 21 Si 0.95 40.72 27.47 68.60 1.88 42.61 16 22 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 23 H -0.30 -13.21 7.11 99.48 0.71 -12.50 16 24 H -0.24 -9.04 6.54 99.48 0.65 -8.39 16 25 C 0.05 0.93 5.41 86.31 0.47 1.40 16 26 C 0.06 0.94 4.30 86.31 0.37 1.31 16 27 C -0.14 -2.52 9.17 22.43 0.21 -2.32 16 28 C 0.07 1.46 7.31 22.44 0.16 1.63 16 29 F -0.14 -3.44 17.11 44.97 0.77 -2.67 16 30 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 31 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 33 H 0.16 1.48 6.29 -2.91 -0.02 1.46 16 34 H 0.15 1.92 5.80 -2.92 -0.02 1.91 16 35 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.10 1.33 6.82 -2.39 -0.02 1.32 16 37 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.09 1.41 8.07 -2.38 -0.02 1.39 16 39 H 0.09 1.89 8.03 -2.39 -0.02 1.87 16 40 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 41 H 0.03 1.07 7.20 -2.38 -0.02 1.05 16 42 H 0.06 2.11 7.57 -2.39 -0.02 2.09 16 43 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.09 1.72 6.26 -2.38 -0.01 1.70 16 46 H 0.10 1.41 7.17 -2.39 -0.02 1.40 16 47 H 0.05 0.90 7.58 -2.39 -0.02 0.88 16 48 H 0.15 2.36 7.17 -2.91 -0.02 2.34 16 Total: -1.00 -72.99 389.14 2.45 -70.55 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.93 Total: 11.92 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 6.40 Total: -7.21 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -6.56 Total: -107.93 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.98 Total: -7.26 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.77 Total: -2.67 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.88 Total: 42.61 kcal Total: -72.99 2.45 -70.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151360199.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.571 kcal (2) G-P(sol) polarization free energy of solvation -72.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds