Wall clock time and date at job start Wed Apr 1 2020 05:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37594 * 119.60115 * 2 1 4 4 N 1.35913 * 134.42595 * 0.62964 * 3 2 1 5 5 H 0.97000 * 126.20449 * 359.33786 * 4 3 2 6 6 C 1.36454 * 107.58143 * 179.55334 * 4 3 2 7 7 C 1.50707 * 125.22461 * 179.75063 * 6 4 3 8 8 N 1.46902 * 109.47112 * 95.01621 * 7 6 4 9 9 C 1.46902 * 110.99678 * 169.99650 * 8 7 6 10 10 C 1.50690 * 109.47520 * 284.10775 * 9 8 7 11 11 H 1.08006 * 120.00056 * 4.77932 * 10 9 8 12 12 C 1.37879 * 120.00276 * 184.78159 * 10 9 8 13 13 N 1.31513 * 119.99795 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00109 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47389 * 90.00179 * 14 12 10 16 16 H 1.48497 * 109.47070 * 210.00043 * 14 12 10 17 17 H 1.48501 * 109.47267 * 330.00234 * 14 12 10 18 18 C 1.46899 * 110.99989 * 293.95250 * 8 7 6 19 19 C 1.52997 * 109.46791 * 163.82589 * 18 8 7 20 20 C 1.52999 * 117.49793 * 245.47845 * 19 18 8 21 21 C 1.53004 * 117.49748 * 176.82211 * 19 18 8 22 22 N 1.30162 * 109.54885 * 359.78711 * 6 4 3 23 23 C 1.35468 * 109.08510 * 0.02562 * 22 6 4 24 24 C 1.46380 * 134.30449 * 180.02562 * 23 22 6 25 25 O 1.21747 * 120.75179 * 0.02562 * 24 23 22 26 26 N 1.35060 * 118.49738 * 179.97438 * 24 23 22 27 27 C 1.46499 * 119.54420 * 179.97438 * 26 24 23 28 28 C 1.34344 * 120.91697 * 359.97438 * 26 24 23 29 29 O 1.21599 * 118.84954 * 180.02562 * 28 26 24 30 30 H 1.08995 * 109.47463 * 179.71960 * 1 2 3 31 31 H 1.09006 * 109.46964 * 59.71985 * 1 2 3 32 32 H 1.09002 * 109.47027 * 299.72863 * 1 2 3 33 33 H 1.09001 * 109.46781 * 215.01873 * 7 6 4 34 34 H 1.09006 * 109.47039 * 335.01637 * 7 6 4 35 35 H 1.09000 * 109.47215 * 44.11106 * 9 8 7 36 36 H 1.09000 * 109.46915 * 164.10724 * 9 8 7 37 37 H 0.97002 * 119.99798 * 179.97438 * 13 12 10 38 38 H 1.08997 * 109.47062 * 283.82648 * 18 8 7 39 39 H 1.08996 * 109.47324 * 43.82795 * 18 8 7 40 40 H 1.08994 * 115.55547 * 31.14801 * 19 18 8 41 41 H 1.09007 * 117.49832 * 0.02562 * 20 19 18 42 42 H 1.09002 * 117.49974 * 145.01859 * 20 19 18 43 43 H 1.08997 * 117.49699 * 214.97526 * 21 19 18 44 44 H 1.08994 * 117.49966 * 359.97438 * 21 19 18 45 45 H 1.09004 * 109.46694 * 270.01815 * 27 26 24 46 46 H 1.08999 * 109.46985 * 30.01658 * 27 26 24 47 47 H 1.08996 * 109.47642 * 150.02590 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1447 1.1964 0.0000 4 7 1.7707 2.5030 0.0107 5 1 0.8606 2.8385 0.0121 6 6 2.9079 3.2572 0.0140 7 6 2.9519 4.7636 0.0200 8 7 3.0868 5.2441 1.4016 9 6 3.3703 6.6851 1.4325 10 6 4.8104 6.9220 1.0572 11 1 5.4302 6.0944 0.7449 12 6 5.3369 8.1951 1.1126 13 7 4.5820 9.2028 1.4924 14 14 7.1222 8.4885 0.6481 15 1 7.2140 8.7819 -0.8048 16 1 7.6515 9.6413 1.4202 17 1 7.9205 7.2757 0.9595 18 6 1.8879 4.9263 2.1889 19 6 2.2050 5.0649 3.6792 20 6 2.1621 3.7951 4.5316 21 6 1.0585 4.8469 4.6686 22 7 3.9488 2.4757 0.0105 23 6 3.5344 1.1860 0.0042 24 6 4.2189 -0.1079 -0.0014 25 8 5.4349 -0.1689 -0.0004 26 7 3.4711 -1.2326 -0.0067 27 6 4.1325 -2.5398 -0.0129 28 6 2.1292 -1.1692 -0.0063 29 8 1.4929 -2.2054 -0.0107 30 1 -0.3634 -1.0276 -0.0050 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3633 0.5096 0.8924 33 1 3.8040 5.1045 -0.5681 34 1 2.0315 5.1557 -0.4128 35 1 2.7209 7.1985 0.7234 36 1 3.1883 7.0698 2.4360 37 1 4.9525 10.0984 1.5317 38 1 1.0856 5.6143 1.9226 39 1 1.5749 3.9039 1.9776 40 1 2.9527 5.8162 3.9329 41 1 1.9083 2.8609 4.0305 42 1 2.8813 3.7112 5.3463 43 1 1.0522 5.4547 5.5734 44 1 0.0783 4.6053 4.2578 45 1 4.2966 -2.8589 -1.0422 46 1 5.0905 -2.4647 0.5014 47 1 3.5023 -3.2683 0.4971 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161986384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:31 Heat of formation + Delta-G solvation = 59.545523 kcal Electronic energy + Delta-G solvation = -31209.900202 eV Core-core repulsion = 27010.095167 eV Total energy + Delta-G solvation = -4199.805036 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.06804 -41.26633 -39.14788 -37.95132 -36.66455 -35.58366 -35.42773 -33.03785 -32.56076 -30.58807 -28.90217 -27.71886 -27.11087 -26.71008 -24.30347 -23.50606 -23.05728 -22.18024 -21.64217 -21.05309 -20.02090 -19.39321 -18.40917 -17.91579 -17.55535 -16.58229 -16.40686 -15.89456 -15.59764 -15.57132 -15.45624 -15.12992 -14.74053 -14.56124 -14.04307 -14.00766 -13.65870 -13.43299 -13.16237 -13.02867 -12.98503 -12.73145 -12.60536 -12.06713 -11.61478 -11.39892 -11.36490 -11.34435 -11.07522 -10.89630 -10.69217 -10.64319 -10.54404 -10.31832 -10.10649 -10.07265 -9.99053 -9.82613 -9.64496 -9.27129 -8.44293 -8.08011 -7.46581 -6.04160 -4.05113 1.10385 1.29223 1.55536 2.27320 2.51537 2.82951 3.35399 3.40089 3.42073 3.49847 3.85644 4.05270 4.21578 4.44063 4.52010 4.67781 4.70887 4.72016 4.93462 5.03029 5.08243 5.11475 5.12379 5.18363 5.19324 5.31974 5.40896 5.44389 5.51585 5.59733 5.64937 5.78218 5.88428 5.96008 5.99245 6.09870 6.13381 6.18222 6.29608 6.66863 6.74425 7.00492 7.06372 7.15050 7.27849 7.57089 7.76645 7.89446 7.95257 8.05904 8.42697 9.04421 9.60210 11.06137 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.003207 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.364630 B = 8727.616938 C =10034.503459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.516 5.516 3 C 0.255 3.745 4 N -0.556 5.556 5 H 0.424 0.576 6 C 0.260 3.740 7 C 0.145 3.855 8 N -0.523 5.523 9 C 0.195 3.805 10 C -0.507 4.507 11 H 0.069 0.931 12 C 0.057 3.943 13 N -0.901 5.901 14 Si 0.896 3.104 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.270 1.270 18 C 0.084 3.916 19 C -0.129 4.129 20 C -0.177 4.177 21 C -0.188 4.188 22 N -0.384 5.384 23 C -0.089 4.089 24 C 0.594 3.406 25 O -0.480 6.480 26 N -0.556 5.556 27 C 0.084 3.916 28 C 0.717 3.283 29 O -0.543 6.543 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.045 0.955 35 H -0.007 1.007 36 H 0.042 0.958 37 H 0.261 0.739 38 H 0.032 0.968 39 H 0.050 0.950 40 H 0.118 0.882 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.095 0.905 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.912 -17.548 -1.934 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.244 5.244 3 C 0.036 3.964 4 N -0.166 5.166 5 H 0.263 0.737 6 C -0.006 4.006 7 C 0.015 3.985 8 N -0.248 5.248 9 C 0.071 3.929 10 C -0.546 4.546 11 H 0.087 0.913 12 C -0.144 4.144 13 N -0.540 5.540 14 Si 0.724 3.276 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.195 1.195 18 C -0.044 4.044 19 C -0.147 4.147 20 C -0.214 4.214 21 C -0.225 4.225 22 N -0.101 5.101 23 C -0.221 4.221 24 C 0.386 3.614 25 O -0.351 6.351 26 N -0.301 5.301 27 C -0.056 4.056 28 C 0.420 3.580 29 O -0.417 6.417 30 H 0.129 0.871 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.143 0.857 34 H 0.063 0.937 35 H 0.011 0.989 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.136 0.864 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.114 0.886 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.257 -18.058 -1.691 21.346 hybrid contribution -1.274 0.691 -0.467 1.523 sum -12.531 -17.367 -2.158 21.525 Atomic orbital electron populations 1.22118 0.75418 1.06802 1.02890 1.43534 1.08414 1.01061 1.71418 1.18047 0.92021 0.81216 1.05119 1.42859 1.11650 1.02800 1.59307 0.73650 1.23959 0.77747 0.95895 1.02984 1.20550 1.03153 0.81236 0.93569 1.62068 1.33466 1.21194 1.08063 1.19833 0.96776 0.78695 0.97641 1.21207 0.95728 0.93359 1.44257 0.91298 1.24955 0.98019 0.96046 0.95391 1.69949 1.36125 0.99835 1.48128 0.86516 0.84928 0.77880 0.78298 1.20734 1.21428 1.19501 1.21638 0.92128 0.98308 0.92362 1.22290 1.00584 1.00115 0.91724 1.22892 1.01716 0.93479 1.03323 1.22937 0.93981 1.03756 1.01874 1.70313 1.27694 0.97434 1.14654 1.20222 0.87241 0.93555 1.21099 1.16962 0.86548 0.81952 0.75967 1.90888 1.12205 1.86383 1.45603 1.45907 1.05556 1.10212 1.68432 1.21943 0.98941 0.80631 1.04108 1.15202 0.81728 0.82810 0.78280 1.91000 1.65295 1.29857 1.55568 0.87055 0.90602 0.90564 0.85707 0.93697 0.98930 0.94002 0.92953 0.95041 0.93208 0.86394 0.89905 0.89155 0.89038 0.89609 0.90680 0.88641 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 10.58 59.85 0.63 1.06 16 2 N -0.52 -5.33 3.03 -127.99 -0.39 -5.72 16 3 C 0.26 3.11 7.74 -153.34 -1.19 1.92 16 4 N -0.56 -6.02 5.30 -9.06 -0.05 -6.07 16 5 H 0.42 2.97 8.94 -40.82 -0.36 2.60 16 6 C 0.26 3.92 6.65 -154.39 -1.03 2.89 16 7 C 0.14 2.37 5.41 -4.97 -0.03 2.34 16 8 N -0.52 -9.97 4.37 -237.52 -1.04 -11.00 16 9 C 0.19 4.56 4.55 -4.98 -0.02 4.53 16 10 C -0.51 -13.46 8.62 -34.44 -0.30 -13.76 16 11 H 0.07 1.87 7.67 -52.48 -0.40 1.47 16 12 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 13 N -0.90 -25.58 13.29 55.43 0.74 -24.85 16 14 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 C 0.08 1.31 5.11 -3.83 -0.02 1.29 16 19 C -0.13 -2.06 5.58 -90.62 -0.51 -2.57 16 20 C -0.18 -2.47 10.18 -26.70 -0.27 -2.74 16 21 C -0.19 -2.41 10.25 -26.69 -0.27 -2.68 16 22 N -0.38 -7.00 11.30 -6.83 -0.08 -7.08 16 23 C -0.09 -1.44 7.42 -82.71 -0.61 -2.05 16 24 C 0.59 9.37 7.63 -12.86 -0.10 9.27 16 25 O -0.48 -8.89 16.75 5.15 0.09 -8.80 16 26 N -0.56 -7.00 2.96 -129.84 -0.38 -7.38 16 27 C 0.08 0.79 10.09 59.85 0.60 1.40 16 28 C 0.72 8.61 8.10 -87.58 -0.71 7.90 16 29 O -0.54 -6.94 14.91 5.28 0.08 -6.86 16 30 H 0.11 0.71 6.80 -51.93 -0.35 0.36 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.13 2.30 7.34 -51.93 -0.38 1.92 16 34 H 0.05 0.61 8.12 -51.93 -0.42 0.19 16 35 H -0.01 -0.17 8.00 -51.93 -0.42 -0.59 16 36 H 0.04 1.06 6.47 -51.93 -0.34 0.72 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.03 0.48 8.05 -51.93 -0.42 0.06 16 39 H 0.05 0.67 5.96 -51.93 -0.31 0.36 16 40 H 0.12 2.23 6.88 -51.93 -0.36 1.88 16 41 H 0.08 1.11 8.04 -51.92 -0.42 0.70 16 42 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.88 7.42 -51.93 -0.39 0.49 16 47 H 0.09 0.77 7.33 -51.93 -0.38 0.39 16 LS Contribution 390.31 15.07 5.88 5.88 Total: -1.00 -33.96 390.31 -10.70 -44.66 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.61 Total: 0.58 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: -3.91 Total: 10.27 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -1.20 Total: -62.10 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.16 Total: -15.66 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.96 -10.70 -44.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161986384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.207 kcal (2) G-P(sol) polarization free energy of solvation -33.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds