Wall clock time and date at job start Wed Apr 1 2020 05:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37594 * 119.60115 * 2 1 4 4 N 1.35913 * 134.42595 * 0.62964 * 3 2 1 5 5 H 0.97000 * 126.20449 * 359.33786 * 4 3 2 6 6 C 1.36454 * 107.58143 * 179.55334 * 4 3 2 7 7 C 1.50707 * 125.22461 * 179.75063 * 6 4 3 8 8 N 1.46902 * 109.47112 * 95.01621 * 7 6 4 9 9 C 1.46902 * 110.99678 * 169.99650 * 8 7 6 10 10 C 1.50690 * 109.47520 * 284.10775 * 9 8 7 11 11 H 1.08006 * 120.00056 * 4.77932 * 10 9 8 12 12 C 1.37879 * 120.00276 * 184.78159 * 10 9 8 13 13 N 1.31513 * 119.99795 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00109 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47389 * 90.00179 * 14 12 10 16 16 H 1.48497 * 109.47070 * 210.00043 * 14 12 10 17 17 H 1.48501 * 109.47267 * 330.00234 * 14 12 10 18 18 C 1.46899 * 110.99989 * 293.95250 * 8 7 6 19 19 C 1.52997 * 109.46791 * 163.82589 * 18 8 7 20 20 C 1.52999 * 117.49793 * 245.47845 * 19 18 8 21 21 C 1.53004 * 117.49748 * 176.82211 * 19 18 8 22 22 N 1.30162 * 109.54885 * 359.78711 * 6 4 3 23 23 C 1.35468 * 109.08510 * 0.02562 * 22 6 4 24 24 C 1.46380 * 134.30449 * 180.02562 * 23 22 6 25 25 O 1.21747 * 120.75179 * 0.02562 * 24 23 22 26 26 N 1.35060 * 118.49738 * 179.97438 * 24 23 22 27 27 C 1.46499 * 119.54420 * 179.97438 * 26 24 23 28 28 C 1.34344 * 120.91697 * 359.97438 * 26 24 23 29 29 O 1.21599 * 118.84954 * 180.02562 * 28 26 24 30 30 H 1.08995 * 109.47463 * 179.71960 * 1 2 3 31 31 H 1.09006 * 109.46964 * 59.71985 * 1 2 3 32 32 H 1.09002 * 109.47027 * 299.72863 * 1 2 3 33 33 H 1.09001 * 109.46781 * 215.01873 * 7 6 4 34 34 H 1.09006 * 109.47039 * 335.01637 * 7 6 4 35 35 H 1.09000 * 109.47215 * 44.11106 * 9 8 7 36 36 H 1.09000 * 109.46915 * 164.10724 * 9 8 7 37 37 H 0.97002 * 119.99798 * 179.97438 * 13 12 10 38 38 H 1.08997 * 109.47062 * 283.82648 * 18 8 7 39 39 H 1.08996 * 109.47324 * 43.82795 * 18 8 7 40 40 H 1.08994 * 115.55547 * 31.14801 * 19 18 8 41 41 H 1.09007 * 117.49832 * 0.02562 * 20 19 18 42 42 H 1.09002 * 117.49974 * 145.01859 * 20 19 18 43 43 H 1.08997 * 117.49699 * 214.97526 * 21 19 18 44 44 H 1.08994 * 117.49966 * 359.97438 * 21 19 18 45 45 H 1.09004 * 109.46694 * 270.01815 * 27 26 24 46 46 H 1.08999 * 109.46985 * 30.01658 * 27 26 24 47 47 H 1.08996 * 109.47642 * 150.02590 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1447 1.1964 0.0000 4 7 1.7707 2.5030 0.0107 5 1 0.8606 2.8385 0.0121 6 6 2.9079 3.2572 0.0140 7 6 2.9519 4.7636 0.0200 8 7 3.0868 5.2441 1.4016 9 6 3.3703 6.6851 1.4325 10 6 4.8104 6.9220 1.0572 11 1 5.4302 6.0944 0.7449 12 6 5.3369 8.1951 1.1126 13 7 4.5820 9.2028 1.4924 14 14 7.1222 8.4885 0.6481 15 1 7.2140 8.7819 -0.8048 16 1 7.6515 9.6413 1.4202 17 1 7.9205 7.2757 0.9595 18 6 1.8879 4.9263 2.1889 19 6 2.2050 5.0649 3.6792 20 6 2.1621 3.7951 4.5316 21 6 1.0585 4.8469 4.6686 22 7 3.9488 2.4757 0.0105 23 6 3.5344 1.1860 0.0042 24 6 4.2189 -0.1079 -0.0014 25 8 5.4349 -0.1689 -0.0004 26 7 3.4711 -1.2326 -0.0067 27 6 4.1325 -2.5398 -0.0129 28 6 2.1292 -1.1692 -0.0063 29 8 1.4929 -2.2054 -0.0107 30 1 -0.3634 -1.0276 -0.0050 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3633 0.5096 0.8924 33 1 3.8040 5.1045 -0.5681 34 1 2.0315 5.1557 -0.4128 35 1 2.7209 7.1985 0.7234 36 1 3.1883 7.0698 2.4360 37 1 4.9525 10.0984 1.5317 38 1 1.0856 5.6143 1.9226 39 1 1.5749 3.9039 1.9776 40 1 2.9527 5.8162 3.9329 41 1 1.9083 2.8609 4.0305 42 1 2.8813 3.7112 5.3463 43 1 1.0522 5.4547 5.5734 44 1 0.0783 4.6053 4.2578 45 1 4.2966 -2.8589 -1.0422 46 1 5.0905 -2.4647 0.5014 47 1 3.5023 -3.2683 0.4971 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161986384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:28 Heat of formation + Delta-G solvation = 36.955234 kcal Electronic energy + Delta-G solvation = -31210.879791 eV Core-core repulsion = 27010.095167 eV Total energy + Delta-G solvation = -4200.784624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -44.12064 -42.30654 -40.24536 -39.25319 -37.63042 -36.90109 -36.49323 -34.61616 -34.09479 -31.66436 -29.98158 -29.36906 -27.92707 -27.83654 -25.86974 -24.54548 -24.21236 -23.31168 -23.04060 -22.17021 -21.18754 -20.62665 -19.46931 -18.88771 -18.57828 -18.45934 -17.40038 -16.96144 -16.92576 -16.81147 -16.55807 -16.37375 -16.00935 -15.83736 -15.49976 -15.11308 -14.89391 -14.46754 -14.29255 -14.02356 -13.96070 -13.83803 -13.53932 -13.36144 -13.21375 -13.07757 -12.60005 -12.51414 -12.39625 -12.37369 -12.25322 -12.04479 -11.76509 -11.68788 -11.39193 -11.30920 -11.25403 -11.10541 -10.95135 -10.81360 -10.51990 -9.18524 -8.95819 -8.14024 -6.20743 0.04149 0.35466 0.45982 1.25002 1.41187 1.43657 1.45463 1.57383 1.92763 2.28575 2.45722 2.80198 2.91893 3.18801 3.19874 3.37779 3.58346 3.84240 3.89223 4.01946 4.04709 4.21936 4.24724 4.29861 4.34004 4.39755 4.41436 4.43894 4.64736 4.68613 4.73001 4.73700 4.74946 4.77287 4.82471 4.96158 5.03070 5.12305 5.21557 5.26407 5.31368 5.40936 5.73511 5.75312 6.07342 6.13722 6.26197 6.35470 6.51541 6.63898 6.82111 6.94827 7.48189 8.95426 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.003207 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.364630 B = 8727.616938 C =10034.503459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.508 5.508 3 C 0.299 3.701 4 N -0.529 5.529 5 H 0.447 0.553 6 C 0.261 3.739 7 C 0.148 3.852 8 N -0.541 5.541 9 C 0.214 3.786 10 C -0.516 4.516 11 H 0.055 0.945 12 C 0.011 3.989 13 N -0.930 5.930 14 Si 0.953 3.047 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.275 1.275 18 C 0.091 3.909 19 C -0.163 4.163 20 C -0.174 4.174 21 C -0.159 4.159 22 N -0.435 5.435 23 C -0.136 4.136 24 C 0.593 3.407 25 O -0.524 6.524 26 N -0.554 5.554 27 C 0.079 3.921 28 C 0.715 3.285 29 O -0.546 6.546 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.080 0.920 35 H -0.020 1.020 36 H 0.018 0.982 37 H 0.263 0.737 38 H 0.042 0.958 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.113 0.887 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.854 -19.041 -2.141 24.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.235 5.235 3 C 0.077 3.923 4 N -0.142 5.142 5 H 0.291 0.709 6 C -0.005 4.005 7 C 0.019 3.981 8 N -0.266 5.266 9 C 0.089 3.911 10 C -0.555 4.555 11 H 0.073 0.927 12 C -0.187 4.187 13 N -0.571 5.571 14 Si 0.779 3.221 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.200 1.200 18 C -0.037 4.037 19 C -0.182 4.182 20 C -0.211 4.211 21 C -0.197 4.197 22 N -0.152 5.152 23 C -0.267 4.267 24 C 0.385 3.615 25 O -0.398 6.398 26 N -0.298 5.298 27 C -0.061 4.061 28 C 0.418 3.582 29 O -0.421 6.421 30 H 0.130 0.870 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.097 0.903 35 H -0.002 1.002 36 H 0.036 0.964 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.115 0.885 44 H 0.131 0.869 45 H 0.107 0.893 46 H 0.111 0.889 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.282 -19.587 -1.904 24.316 hybrid contribution -0.447 1.050 -0.390 1.207 sum -14.730 -18.537 -2.294 23.787 Atomic orbital electron populations 1.22545 0.72341 1.07717 1.05461 1.43777 1.10023 0.99663 1.70083 1.17773 0.90817 0.82009 1.01732 1.42493 1.11877 1.01673 1.58133 0.70867 1.23346 0.78527 0.95061 1.03594 1.20386 1.03624 0.82248 0.91866 1.61838 1.36307 1.18228 1.10250 1.19375 0.94787 0.81457 0.95507 1.21487 0.97354 0.92986 1.43671 0.92657 1.25652 1.01539 0.96000 0.95543 1.70037 1.37613 1.00135 1.49282 0.85629 0.80637 0.77419 0.78431 1.19739 1.20925 1.20040 1.21658 0.90779 0.99845 0.91422 1.22191 1.02291 1.00835 0.92900 1.22935 1.02295 0.93294 1.02554 1.23034 0.94093 1.01977 1.00563 1.70172 1.30031 0.99056 1.15985 1.20308 0.89250 0.93014 1.24089 1.17125 0.86236 0.82748 0.75363 1.90850 1.13861 1.87018 1.48093 1.45986 1.05947 1.10279 1.67552 1.22170 0.99033 0.79599 1.05292 1.15287 0.81384 0.83282 0.78293 1.91010 1.65180 1.30021 1.55840 0.87045 0.87957 0.88125 0.88622 0.90251 1.00208 0.96414 0.92846 0.94027 0.90552 0.90548 0.88785 0.89576 0.88501 0.86898 0.89267 0.88918 0.87274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.45 10.58 127.77 1.35 1.80 16 2 N -0.51 -8.79 3.03 -677.28 -2.05 -10.84 16 3 C 0.30 6.51 7.74 132.42 1.02 7.53 16 4 N -0.53 -9.77 5.30 -182.57 -0.97 -10.73 16 5 H 0.45 4.07 8.94 -92.71 -0.83 3.25 16 6 C 0.26 7.60 6.65 137.77 0.92 8.51 16 7 C 0.15 4.79 5.41 85.56 0.46 5.26 16 8 N -0.54 -20.80 4.37 -905.37 -3.96 -24.75 16 9 C 0.21 10.36 4.55 85.55 0.39 10.75 16 10 C -0.52 -28.40 8.62 25.60 0.22 -28.18 16 11 H 0.06 3.13 7.67 -2.91 -0.02 3.11 16 12 C 0.01 0.61 5.46 84.66 0.46 1.07 16 13 N -0.93 -53.96 13.29 21.45 0.28 -53.67 16 14 Si 0.95 44.83 29.54 68.60 2.03 46.85 16 15 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 16 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 18 C 0.09 2.70 5.11 86.30 0.44 3.14 16 19 C -0.16 -5.16 5.58 -10.79 -0.06 -5.22 16 20 C -0.17 -4.55 10.18 30.62 0.31 -4.24 16 21 C -0.16 -3.67 10.25 30.62 0.31 -3.36 16 22 N -0.44 -16.01 11.30 -175.52 -1.98 -17.99 16 23 C -0.14 -4.32 7.42 40.88 0.30 -4.02 16 24 C 0.59 18.86 7.63 86.32 0.66 19.51 16 25 O -0.52 -20.23 16.75 -4.50 -0.08 -20.30 16 26 N -0.55 -13.40 2.96 -801.23 -2.37 -15.77 16 27 C 0.08 1.41 10.09 127.77 1.29 2.70 16 28 C 0.71 15.47 8.10 179.29 1.45 16.92 16 29 O -0.55 -12.42 14.91 -4.03 -0.06 -12.48 16 30 H 0.11 0.96 6.80 -2.39 -0.02 0.94 16 31 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.10 3.66 7.34 -2.39 -0.02 3.64 16 34 H 0.08 1.99 8.12 -2.38 -0.02 1.97 16 35 H -0.02 -0.99 8.00 -2.39 -0.02 -1.00 16 36 H 0.02 0.94 6.47 -2.39 -0.02 0.93 16 37 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 38 H 0.04 1.16 8.05 -2.39 -0.02 1.14 16 39 H 0.08 1.82 5.96 -2.39 -0.01 1.80 16 40 H 0.08 3.06 6.88 -2.39 -0.02 3.04 16 41 H 0.09 2.25 8.04 -2.38 -0.02 2.23 16 42 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 46 H 0.09 1.72 7.42 -2.39 -0.02 1.70 16 47 H 0.11 1.60 7.33 -2.39 -0.02 1.58 16 Total: -1.00 -78.02 390.31 0.58 -77.44 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.19 Total: 10.07 kcal Atomic # 6 Polarization: 22.64 SS G_CDS: 9.54 Total: 32.18 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -11.04 Total: -133.77 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.14 Total: -32.78 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -78.02 0.58 -77.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161986384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.398 kcal (2) G-P(sol) polarization free energy of solvation -78.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds