Wall clock time and date at job start Wed Apr 1 2020 06:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34755 * 117.00311 * 2 1 4 4 O 1.21519 * 119.99767 * 0.02562 * 3 2 1 5 5 C 1.47388 * 120.00112 * 179.97438 * 3 2 1 6 6 C 1.36656 * 125.78094 * 179.97438 * 5 3 2 7 7 N 1.34783 * 106.83577 * 180.02562 * 6 5 3 8 8 C 1.46503 * 126.58474 * 180.02562 * 7 6 5 9 9 C 1.53115 * 109.52551 * 34.66638 * 8 7 6 10 10 C 1.53035 * 109.28088 * 182.43868 * 9 8 7 11 11 N 1.46852 * 109.52181 * 59.18117 * 10 9 8 12 12 C 1.46901 * 110.99868 * 174.16077 * 11 10 9 13 13 C 1.53004 * 109.47103 * 294.21098 * 12 11 10 14 14 H 1.08996 * 109.47491 * 54.99975 * 13 12 11 15 15 C 1.47199 * 109.46804 * 294.99895 * 13 12 11 16 16 N 8.88584 * 148.88914 * 161.08384 * 3 1 2 17 17 C 1.53002 * 109.47057 * 175.00236 * 13 12 11 18 18 C 1.50693 * 109.46967 * 184.99760 * 17 13 12 19 19 H 1.08003 * 120.00506 * 359.97438 * 18 17 13 20 20 C 1.37883 * 120.00124 * 179.97438 * 18 17 13 21 21 N 1.31513 * 119.99761 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00275 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46931 * 89.99587 * 22 20 18 24 24 H 1.48496 * 109.46943 * 209.99748 * 22 20 18 25 25 H 1.48497 * 109.46957 * 330.00334 * 22 20 18 26 26 C 1.46842 * 111.19853 * 298.25538 * 11 10 9 27 27 C 1.53047 * 109.52138 * 61.73968 * 26 11 10 28 28 N 1.40202 * 106.83032 * 0.02562 * 7 6 5 29 29 N 1.28764 * 108.38062 * 359.97438 * 28 7 6 30 30 H 1.09001 * 109.46975 * 299.99991 * 1 2 3 31 31 H 1.08997 * 109.46966 * 59.99271 * 1 2 3 32 32 H 1.08997 * 109.47509 * 179.97438 * 1 2 3 33 33 H 1.08001 * 126.58261 * 0.04755 * 6 5 3 34 34 H 1.09002 * 109.52300 * 154.85929 * 8 7 6 35 35 H 1.09004 * 109.50222 * 302.38182 * 9 8 7 36 36 H 1.08999 * 109.50615 * 62.49922 * 9 8 7 37 37 H 1.08998 * 109.46578 * 299.16451 * 10 9 8 38 38 H 1.09001 * 109.45262 * 179.19219 * 10 9 8 39 39 H 1.08997 * 109.47107 * 54.20910 * 12 11 10 40 40 H 1.08995 * 109.46979 * 174.20729 * 12 11 10 41 41 H 1.09003 * 109.46880 * 304.99669 * 17 13 12 42 42 H 1.08997 * 109.46949 * 64.99641 * 17 13 12 43 43 H 0.96998 * 120.00215 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.46436 * 301.73449 * 26 11 10 45 45 H 1.08996 * 109.45519 * 181.75275 * 26 11 10 46 46 H 1.09000 * 109.50183 * 180.87776 * 27 26 11 47 47 H 1.09001 * 109.49747 * 60.76898 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2198 0.0005 5 6 3.5357 1.2777 0.0006 6 6 4.2756 2.4266 0.0001 7 7 5.5716 2.0563 0.0003 8 6 6.7343 2.9475 0.0006 9 6 6.4184 4.2009 0.8214 10 6 7.6138 5.1548 0.7676 11 7 7.8889 5.5186 -0.6283 12 6 8.9412 6.5405 -0.7084 13 6 8.4377 7.8414 -0.0799 14 1 8.0983 7.6459 0.9373 15 6 7.3193 8.3708 -0.8772 16 7 6.4557 8.7805 -1.4884 17 6 9.5732 8.8664 -0.0505 18 6 9.1146 10.1033 0.6780 19 1 8.1133 10.1535 1.0796 20 6 9.9734 11.1710 0.8320 21 7 11.1929 11.1097 0.3435 22 14 9.4047 12.7045 1.7345 23 1 9.7106 12.5693 3.1814 24 1 10.1109 13.8909 1.1879 25 1 7.9406 12.8720 1.5517 26 6 8.2412 4.3368 -1.4255 27 6 7.0645 3.3583 -1.4370 28 7 5.5932 0.6545 0.0003 29 7 4.3776 0.2297 0.0007 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.8950 3.4374 0.0000 34 1 7.5891 2.4309 0.4372 35 1 5.5395 4.6950 0.4072 36 1 6.2242 3.9188 1.8562 37 1 8.4889 4.6649 1.1944 38 1 7.3863 6.0545 1.3393 39 1 9.8244 6.1953 -0.1710 40 1 9.1974 6.7170 -1.7530 41 1 10.4344 8.4400 0.4640 42 1 9.8527 9.1284 -1.0710 43 1 11.7969 11.8609 0.4515 44 1 9.1134 3.8506 -0.9883 45 1 8.4695 4.6425 -2.4465 46 1 7.3320 2.4743 -2.0159 47 1 6.1958 3.8392 -1.8868 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183727395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:19 Heat of formation + Delta-G solvation = 36.347449 kcal Electronic energy + Delta-G solvation = -29537.465936 eV Core-core repulsion = 25336.654956 eV Total energy + Delta-G solvation = -4200.810980 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.69599 -40.45937 -39.57835 -36.88800 -36.78433 -35.25790 -33.75156 -32.45155 -31.63405 -31.34384 -30.79363 -28.21867 -27.08952 -25.28898 -24.42151 -23.61748 -23.07514 -21.95878 -21.71369 -21.25230 -20.09887 -18.69889 -17.41323 -16.96914 -16.92914 -16.76053 -16.49145 -16.05245 -15.61158 -15.30546 -14.95519 -14.77445 -14.62716 -14.22244 -14.11916 -14.01672 -13.55300 -13.35333 -13.03571 -12.77273 -12.67887 -12.48856 -12.34506 -12.07782 -12.03062 -11.86669 -11.69947 -11.61847 -11.39223 -11.28279 -11.15356 -11.15017 -11.10549 -11.04377 -10.75026 -10.58656 -10.55924 -10.22323 -9.74092 -9.63185 -9.30870 -8.53489 -8.46369 -6.16596 -4.20105 0.67397 1.16751 1.52992 2.31148 2.65620 3.24113 3.31776 3.35905 3.58324 3.68623 3.76887 3.79512 3.82174 4.12528 4.29891 4.35189 4.40616 4.48350 4.66066 4.75587 4.77842 4.80923 4.84285 4.86288 4.92910 5.09362 5.15079 5.17443 5.21799 5.25387 5.34327 5.44613 5.48897 5.55960 5.58993 5.68013 5.80415 5.87833 5.91894 5.99266 6.22062 6.37021 6.88996 6.90708 7.25603 7.32959 7.43341 7.62500 7.78161 8.14936 8.49286 8.84489 9.45931 10.94133 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018080 B = 0.001934 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.295058 B =14474.284096 C =15360.005125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.341 6.341 3 C 0.559 3.441 4 O -0.503 6.503 5 C -0.097 4.097 6 C 0.112 3.888 7 N -0.346 5.346 8 C 0.147 3.853 9 C -0.130 4.130 10 C 0.054 3.946 11 N -0.544 5.544 12 C 0.063 3.937 13 C 0.010 3.990 14 H 0.100 0.900 15 C 0.254 3.746 16 N -0.476 5.476 17 C 0.031 3.969 18 C -0.528 4.528 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.891 5.891 22 Si 0.891 3.109 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.061 3.939 27 C -0.126 4.126 28 N -0.060 5.060 29 N -0.185 5.185 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.208 0.792 34 H 0.116 0.884 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.037 0.963 42 H 0.026 0.974 43 H 0.263 0.737 44 H 0.043 0.957 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.464 -22.620 0.387 24.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.256 6.256 3 C 0.401 3.599 4 O -0.390 6.390 5 C -0.234 4.234 6 C -0.046 4.046 7 N -0.129 5.129 8 C 0.046 3.954 9 C -0.169 4.169 10 C -0.074 4.074 11 N -0.269 5.269 12 C -0.065 4.065 13 C -0.012 4.012 14 H 0.118 0.882 15 C -0.063 4.063 16 N -0.153 5.153 17 C -0.007 4.007 18 C -0.566 4.566 19 H 0.075 0.925 20 C -0.139 4.139 21 N -0.529 5.529 22 Si 0.719 3.281 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.068 4.068 27 C -0.165 4.165 28 N -0.040 5.040 29 N -0.060 5.060 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.224 0.776 34 H 0.134 0.866 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.106 0.894 46 H 0.098 0.902 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.351 -22.654 -0.753 25.349 hybrid contribution 0.124 1.473 1.057 1.818 sum -11.226 -21.180 0.304 23.974 Atomic orbital electron populations 1.23354 0.75598 1.04040 1.02799 1.86637 1.23573 1.31608 1.83800 1.19428 0.86157 0.81860 0.72481 1.90907 1.65659 1.35931 1.46512 1.20170 0.92514 0.89788 1.20955 1.23327 0.83975 1.01359 0.95983 1.50851 1.06367 1.07814 1.47868 1.21961 0.85062 0.89119 0.99208 1.22099 1.01144 0.93475 1.00158 1.22118 0.95976 0.99136 0.90180 1.61991 1.44229 1.10457 1.10260 1.22242 0.91834 0.90047 1.02347 1.19261 0.91489 0.94422 0.96042 0.88218 1.28772 0.93145 0.91414 0.92979 1.80946 1.12506 1.10928 1.10937 1.19176 0.91060 0.91885 0.98628 1.21114 0.99176 0.99898 1.36376 0.92515 1.24950 0.94855 0.98613 0.95509 1.69928 1.05951 1.31806 1.45218 0.86595 0.78994 0.82649 0.79883 1.20470 1.21121 1.19836 1.22005 0.95078 0.90102 0.99583 1.22065 1.00845 0.99816 0.93786 1.82084 1.13425 0.86378 1.22160 1.74777 0.96681 1.25743 1.08789 0.91612 0.91619 0.87727 0.77573 0.86595 0.89546 0.89904 0.93648 0.88446 0.92441 0.89859 0.94443 0.95525 0.92749 0.93919 0.89399 0.90152 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.57 101.05 1.07 1.30 16 2 O -0.34 -3.50 10.57 -40.64 -0.43 -3.93 16 3 C 0.56 6.31 7.96 34.45 0.27 6.59 16 4 O -0.50 -6.37 16.65 -19.28 -0.32 -6.69 16 5 C -0.10 -1.08 7.02 -83.57 -0.59 -1.66 16 6 C 0.11 1.01 10.40 -16.83 -0.17 0.83 16 7 N -0.35 -3.11 3.55 -54.44 -0.19 -3.30 16 8 C 0.15 1.04 3.30 -67.81 -0.22 0.82 16 9 C -0.13 -0.91 5.08 -26.65 -0.14 -1.04 16 10 C 0.05 0.46 5.30 -3.83 -0.02 0.44 16 11 N -0.54 -5.51 4.36 -234.67 -1.02 -6.53 16 12 C 0.06 0.78 4.32 -3.82 -0.02 0.76 16 13 C 0.01 0.16 2.14 -93.40 -0.20 -0.04 16 14 H 0.10 1.49 6.22 -51.93 -0.32 1.17 16 15 C 0.25 4.87 13.66 -20.81 -0.28 4.58 16 16 N -0.48 -10.14 18.53 42.10 0.78 -9.36 16 17 C 0.03 0.67 4.42 -27.89 -0.12 0.55 16 18 C -0.53 -13.38 8.60 -34.44 -0.30 -13.68 16 19 H 0.06 1.44 7.59 -52.48 -0.40 1.04 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -24.63 13.29 55.43 0.74 -23.90 16 22 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.06 0.48 5.46 -3.83 -0.02 0.46 16 27 C -0.13 -0.92 5.70 -26.65 -0.15 -1.07 16 28 N -0.06 -0.69 13.78 60.35 0.83 0.14 16 29 N -0.19 -2.29 12.39 32.83 0.41 -1.88 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.21 1.40 7.28 -52.49 -0.38 1.02 16 34 H 0.12 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.65 7.11 -51.93 -0.37 0.28 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.10 0.90 6.12 -51.93 -0.32 0.58 16 39 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 40 H 0.08 1.04 7.98 -51.93 -0.41 0.63 16 41 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.09 0.71 8.01 -51.93 -0.42 0.29 16 46 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 399.66 15.07 6.02 6.02 Total: -1.00 -32.53 399.66 -6.03 -38.56 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -6.83 Total: -5.21 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -0.99 Total: 0.41 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 1.54 Total: -44.82 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -0.75 Total: -10.62 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.53 -6.03 -38.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183727395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.908 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds