Wall clock time and date at job start Wed Apr 1 2020 06:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34755 * 117.00311 * 2 1 4 4 O 1.21519 * 119.99767 * 0.02562 * 3 2 1 5 5 C 1.47388 * 120.00112 * 179.97438 * 3 2 1 6 6 C 1.36656 * 125.78094 * 179.97438 * 5 3 2 7 7 N 1.34783 * 106.83577 * 180.02562 * 6 5 3 8 8 C 1.46503 * 126.58474 * 180.02562 * 7 6 5 9 9 C 1.53115 * 109.52551 * 34.66638 * 8 7 6 10 10 C 1.53035 * 109.28088 * 182.43868 * 9 8 7 11 11 N 1.46852 * 109.52181 * 59.18117 * 10 9 8 12 12 C 1.46901 * 110.99868 * 174.16077 * 11 10 9 13 13 C 1.53004 * 109.47103 * 294.21098 * 12 11 10 14 14 H 1.08996 * 109.47491 * 54.99975 * 13 12 11 15 15 C 1.47199 * 109.46804 * 294.99895 * 13 12 11 16 16 N 8.88584 * 148.88914 * 161.08384 * 3 1 2 17 17 C 1.53002 * 109.47057 * 175.00236 * 13 12 11 18 18 C 1.50693 * 109.46967 * 184.99760 * 17 13 12 19 19 H 1.08003 * 120.00506 * 359.97438 * 18 17 13 20 20 C 1.37883 * 120.00124 * 179.97438 * 18 17 13 21 21 N 1.31513 * 119.99761 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00275 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46931 * 89.99587 * 22 20 18 24 24 H 1.48496 * 109.46943 * 209.99748 * 22 20 18 25 25 H 1.48497 * 109.46957 * 330.00334 * 22 20 18 26 26 C 1.46842 * 111.19853 * 298.25538 * 11 10 9 27 27 C 1.53047 * 109.52138 * 61.73968 * 26 11 10 28 28 N 1.40202 * 106.83032 * 0.02562 * 7 6 5 29 29 N 1.28764 * 108.38062 * 359.97438 * 28 7 6 30 30 H 1.09001 * 109.46975 * 299.99991 * 1 2 3 31 31 H 1.08997 * 109.46966 * 59.99271 * 1 2 3 32 32 H 1.08997 * 109.47509 * 179.97438 * 1 2 3 33 33 H 1.08001 * 126.58261 * 0.04755 * 6 5 3 34 34 H 1.09002 * 109.52300 * 154.85929 * 8 7 6 35 35 H 1.09004 * 109.50222 * 302.38182 * 9 8 7 36 36 H 1.08999 * 109.50615 * 62.49922 * 9 8 7 37 37 H 1.08998 * 109.46578 * 299.16451 * 10 9 8 38 38 H 1.09001 * 109.45262 * 179.19219 * 10 9 8 39 39 H 1.08997 * 109.47107 * 54.20910 * 12 11 10 40 40 H 1.08995 * 109.46979 * 174.20729 * 12 11 10 41 41 H 1.09003 * 109.46880 * 304.99669 * 17 13 12 42 42 H 1.08997 * 109.46949 * 64.99641 * 17 13 12 43 43 H 0.96998 * 120.00215 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.46436 * 301.73449 * 26 11 10 45 45 H 1.08996 * 109.45519 * 181.75275 * 26 11 10 46 46 H 1.09000 * 109.50183 * 180.87776 * 27 26 11 47 47 H 1.09001 * 109.49747 * 60.76898 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2198 0.0005 5 6 3.5357 1.2777 0.0006 6 6 4.2756 2.4266 0.0001 7 7 5.5716 2.0563 0.0003 8 6 6.7343 2.9475 0.0006 9 6 6.4184 4.2009 0.8214 10 6 7.6138 5.1548 0.7676 11 7 7.8889 5.5186 -0.6283 12 6 8.9412 6.5405 -0.7084 13 6 8.4377 7.8414 -0.0799 14 1 8.0983 7.6459 0.9373 15 6 7.3193 8.3708 -0.8772 16 7 6.4557 8.7805 -1.4884 17 6 9.5732 8.8664 -0.0505 18 6 9.1146 10.1033 0.6780 19 1 8.1133 10.1535 1.0796 20 6 9.9734 11.1710 0.8320 21 7 11.1929 11.1097 0.3435 22 14 9.4047 12.7045 1.7345 23 1 9.7106 12.5693 3.1814 24 1 10.1109 13.8909 1.1879 25 1 7.9406 12.8720 1.5517 26 6 8.2412 4.3368 -1.4255 27 6 7.0645 3.3583 -1.4370 28 7 5.5932 0.6545 0.0003 29 7 4.3776 0.2297 0.0007 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.8950 3.4374 0.0000 34 1 7.5891 2.4309 0.4372 35 1 5.5395 4.6950 0.4072 36 1 6.2242 3.9188 1.8562 37 1 8.4889 4.6649 1.1944 38 1 7.3863 6.0545 1.3393 39 1 9.8244 6.1953 -0.1710 40 1 9.1974 6.7170 -1.7530 41 1 10.4344 8.4400 0.4640 42 1 9.8527 9.1284 -1.0710 43 1 11.7969 11.8609 0.4515 44 1 9.1134 3.8506 -0.9883 45 1 8.4695 4.6425 -2.4465 46 1 7.3320 2.4743 -2.0159 47 1 6.1958 3.8392 -1.8868 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183727395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:18 Heat of formation + Delta-G solvation = 15.716427 kcal Electronic energy + Delta-G solvation = -29538.360564 eV Core-core repulsion = 25336.654956 eV Total energy + Delta-G solvation = -4201.705608 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -43.46448 -41.25375 -40.34097 -38.15364 -37.59034 -36.33256 -35.40073 -33.83437 -32.42442 -32.04646 -31.83372 -28.89927 -28.43152 -26.33740 -25.18414 -24.32331 -24.25763 -23.30675 -22.66851 -22.01412 -20.75029 -19.42465 -18.53783 -18.19929 -18.11484 -17.68343 -17.49664 -16.85415 -16.61491 -16.32863 -15.99163 -15.73447 -15.63306 -15.03536 -14.93334 -14.75266 -14.51711 -14.38569 -14.20533 -14.17619 -13.71562 -13.51910 -13.40991 -13.10244 -13.00522 -12.97129 -12.87387 -12.73468 -12.52675 -12.43107 -12.24874 -12.21949 -12.17453 -11.93608 -11.88264 -11.84586 -11.58600 -11.36153 -11.18531 -11.03557 -10.53038 -10.51821 -9.21275 -8.18129 -6.25438 -0.06613 0.32482 0.84840 1.40450 1.43575 1.51639 1.61023 1.83239 2.12818 2.19874 2.42338 2.88231 3.04515 3.17973 3.20812 3.39707 3.54582 3.64246 3.73543 3.83405 4.01227 4.11850 4.20391 4.24256 4.29017 4.35202 4.39180 4.39377 4.45522 4.60066 4.67494 4.73313 4.75861 4.77127 4.84941 4.95670 5.02023 5.05879 5.07994 5.17266 5.20327 5.34049 5.50193 5.65597 5.81661 6.04861 6.19647 6.24104 6.45840 6.82563 6.86587 6.98648 7.43170 8.92409 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018080 B = 0.001934 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.295058 B =14474.284096 C =15360.005125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.560 3.440 4 O -0.523 6.523 5 C -0.113 4.113 6 C 0.122 3.878 7 N -0.337 5.337 8 C 0.149 3.851 9 C -0.123 4.123 10 C 0.052 3.948 11 N -0.558 5.558 12 C 0.075 3.925 13 C 0.020 3.980 14 H 0.120 0.880 15 C 0.266 3.734 16 N -0.516 5.516 17 C 0.036 3.964 18 C -0.536 4.536 19 H 0.053 0.947 20 C 0.012 3.988 21 N -0.922 5.922 22 Si 0.944 3.056 23 H -0.267 1.267 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.063 3.937 27 C -0.119 4.119 28 N -0.076 5.076 29 N -0.207 5.207 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.133 0.867 33 H 0.228 0.772 34 H 0.131 0.869 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.037 0.963 42 H 0.000 1.000 43 H 0.263 0.737 44 H 0.060 0.940 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.595 -23.624 1.289 25.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.403 3.597 4 O -0.412 6.412 5 C -0.251 4.251 6 C -0.037 4.037 7 N -0.120 5.120 8 C 0.049 3.951 9 C -0.162 4.162 10 C -0.076 4.076 11 N -0.283 5.283 12 C -0.054 4.054 13 C -0.002 4.002 14 H 0.138 0.862 15 C -0.050 4.050 16 N -0.194 5.194 17 C -0.002 4.002 18 C -0.575 4.575 19 H 0.072 0.928 20 C -0.187 4.187 21 N -0.562 5.562 22 Si 0.771 3.229 23 H -0.192 1.192 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.065 4.065 27 C -0.158 4.158 28 N -0.056 5.056 29 N -0.081 5.081 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.151 0.849 33 H 0.245 0.755 34 H 0.148 0.852 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.055 0.945 42 H 0.019 0.981 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.482 -23.688 0.157 26.324 hybrid contribution 0.136 1.769 0.763 1.931 sum -11.346 -21.919 0.919 24.699 Atomic orbital electron populations 1.23671 0.73666 1.06076 1.03057 1.86628 1.25581 1.31150 1.83402 1.19511 0.86325 0.81903 0.71961 1.90886 1.66092 1.36480 1.47724 1.20353 0.92572 0.90295 1.21832 1.23655 0.83749 1.01710 0.94546 1.50958 1.06826 1.07253 1.46929 1.22110 0.84838 0.88981 0.99191 1.22047 1.00391 0.92906 1.00885 1.22172 0.97146 0.99230 0.89068 1.61898 1.43561 1.11128 1.11693 1.22021 0.92780 0.88728 1.01862 1.19238 0.88767 0.94888 0.97268 0.86235 1.29316 0.92983 0.90433 0.92239 1.80949 1.13946 1.12086 1.12416 1.19001 0.92783 0.92064 0.96382 1.21554 0.98832 1.01262 1.35809 0.92839 1.25669 0.95116 1.01343 0.96549 1.70018 1.06867 1.32582 1.46721 0.85754 0.78093 0.79626 0.79447 1.19210 1.21277 1.20203 1.22015 0.95864 0.89334 0.99248 1.21984 1.00175 0.99710 0.93905 1.82020 1.13178 0.87584 1.22821 1.74751 0.97151 1.26622 1.09573 0.91317 0.91420 0.84876 0.75517 0.85168 0.90014 0.88577 0.91923 0.89277 0.90619 0.90371 0.94452 0.98111 0.92814 0.92168 0.89661 0.89573 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 113.37 1.20 1.53 16 2 O -0.35 -7.07 10.57 -56.66 -0.60 -7.67 16 3 C 0.56 12.47 7.96 70.23 0.56 13.03 16 4 O -0.52 -13.04 16.65 19.77 0.33 -12.71 16 5 C -0.11 -2.43 7.02 40.78 0.29 -2.14 16 6 C 0.12 2.02 10.40 83.87 0.87 2.89 16 7 N -0.34 -5.42 3.55 -326.14 -1.16 -6.58 16 8 C 0.15 1.71 3.30 45.07 0.15 1.86 16 9 C -0.12 -1.38 5.08 30.64 0.16 -1.22 16 10 C 0.05 0.72 5.30 86.32 0.46 1.17 16 11 N -0.56 -9.90 4.36 -896.35 -3.91 -13.81 16 12 C 0.07 1.67 4.32 86.30 0.37 2.04 16 13 C 0.02 0.63 2.14 -12.60 -0.03 0.60 16 14 H 0.12 3.31 6.22 -2.39 -0.01 3.29 16 15 C 0.27 10.01 13.66 89.46 1.22 11.24 16 16 N -0.52 -21.83 18.53 19.99 0.37 -21.46 16 17 C 0.04 1.55 4.42 29.85 0.13 1.68 16 18 C -0.54 -26.99 8.60 25.60 0.22 -26.77 16 19 H 0.05 2.67 7.59 -2.91 -0.02 2.65 16 20 C 0.01 0.65 5.46 84.66 0.46 1.11 16 21 N -0.92 -51.15 13.29 21.45 0.28 -50.87 16 22 Si 0.94 42.17 29.54 68.60 2.03 44.19 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 24 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 C 0.06 0.84 5.46 86.33 0.47 1.31 16 27 C -0.12 -1.46 5.70 30.65 0.17 -1.28 16 28 N -0.08 -1.65 13.78 37.02 0.51 -1.14 16 29 N -0.21 -4.98 12.39 -50.04 -0.62 -5.60 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.23 2.67 7.28 -2.91 -0.02 2.65 16 34 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.02 7.11 -2.39 -0.02 1.01 16 36 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.09 1.40 6.12 -2.39 -0.01 1.39 16 39 H 0.08 1.44 8.12 -2.39 -0.02 1.42 16 40 H 0.08 1.84 7.98 -2.39 -0.02 1.82 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 43 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 44 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.08 1.20 8.01 -2.39 -0.02 1.18 16 46 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -70.19 399.66 4.93 -65.25 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: 0.99 Total: 3.34 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 6.71 Total: 7.05 kcal Atomic # 7 Polarization: -94.94 SS G_CDS: -4.52 Total: -99.45 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.27 Total: -20.39 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -70.19 4.93 -65.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183727395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.968 kcal (2) G-P(sol) polarization free energy of solvation -70.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds