Wall clock time and date at job start Wed Apr 1 2020 04:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47042 * 2 1 4 4 C 1.46900 * 111.00324 * 62.07665 * 3 2 1 5 5 C 1.50706 * 109.46797 * 66.04521 * 4 3 2 6 6 O 1.21284 * 120.00053 * 0.02562 * 5 4 3 7 7 N 1.34781 * 119.99733 * 180.02562 * 5 4 3 8 8 C 1.46494 * 119.99652 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.46957 * 180.02562 * 8 7 5 10 10 C 1.38247 * 119.97220 * 269.72612 * 9 8 7 11 11 C 1.38198 * 120.02358 * 179.72263 * 10 9 8 12 12 C 1.38459 * 119.97436 * 0.57494 * 11 10 9 13 13 F 1.35099 * 120.02635 * 179.68065 * 12 11 10 14 14 C 1.38457 * 119.94806 * 359.70116 * 12 11 10 15 15 C 1.38200 * 119.97293 * 0.02562 * 14 12 11 16 16 C 1.46904 * 111.00096 * 298.12481 * 3 2 1 17 17 C 1.53006 * 109.46964 * 288.26504 * 16 3 2 18 18 H 1.08995 * 109.47016 * 57.05214 * 17 16 3 19 19 C 1.47204 * 109.47059 * 297.05345 * 17 16 3 20 20 N 4.48194 * 138.79178 * 314.48449 * 2 1 3 21 21 C 1.52994 * 109.46912 * 177.05428 * 17 16 3 22 22 C 1.50708 * 109.47047 * 184.99837 * 21 17 16 23 23 H 1.08001 * 119.99425 * 0.02562 * 22 21 17 24 24 C 1.37872 * 120.00096 * 179.97438 * 22 21 17 25 25 N 1.31515 * 120.00060 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00161 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47190 * 89.99732 * 26 24 22 28 28 H 1.48490 * 109.47280 * 209.99896 * 26 24 22 29 29 H 1.48504 * 109.47123 * 330.00119 * 26 24 22 30 30 H 1.08996 * 109.47438 * 300.75803 * 1 2 3 31 31 H 1.09004 * 109.47227 * 60.76165 * 1 2 3 32 32 H 1.09007 * 109.47002 * 180.75822 * 1 2 3 33 33 H 1.09001 * 109.47325 * 239.99600 * 2 1 3 34 34 H 1.09002 * 109.46966 * 119.99727 * 2 1 3 35 35 H 1.08993 * 109.47087 * 186.04737 * 4 3 2 36 36 H 1.09003 * 109.46885 * 306.05368 * 4 3 2 37 37 H 0.96994 * 120.00050 * 0.02562 * 7 5 4 38 38 H 1.09000 * 109.47814 * 300.00541 * 8 7 5 39 39 H 1.08999 * 109.47190 * 60.00183 * 8 7 5 40 40 H 1.08004 * 119.98764 * 359.97438 * 10 9 8 41 41 H 1.07998 * 120.01061 * 180.25216 * 11 10 9 42 42 H 1.07997 * 120.01233 * 179.97438 * 14 12 11 43 43 H 1.08000 * 119.98738 * 180.02562 * 15 14 12 44 44 H 1.09000 * 109.47180 * 48.25718 * 16 3 2 45 45 H 1.08995 * 109.47461 * 168.26610 * 16 3 2 46 46 H 1.08997 * 109.47470 * 304.99549 * 21 17 16 47 47 H 1.08998 * 109.47051 * 64.99975 * 21 17 16 48 48 H 0.96998 * 119.99830 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5896 2.0955 1.2117 5 6 2.2535 1.4805 2.4168 6 8 3.0107 0.5430 2.2797 7 7 2.0058 1.9723 3.6470 8 6 2.6507 1.3741 4.8185 9 6 2.2088 2.1022 6.0617 10 6 2.9281 3.1916 6.5166 11 6 2.5205 3.8636 7.6533 12 6 1.3981 3.4381 8.3434 13 9 1.0024 4.0903 9.4584 14 6 0.6817 2.3434 7.8900 15 6 1.0880 1.6765 6.7499 16 6 1.5856 2.0969 -1.2095 17 6 2.3613 1.5688 -2.4181 18 1 2.2108 0.4927 -2.5044 19 6 3.7952 1.8511 -2.2423 20 7 4.9018 2.0690 -2.1066 21 6 1.8577 2.2578 -3.6879 22 6 2.5339 1.6511 -4.8904 23 1 3.2507 0.8536 -4.7617 24 6 2.2366 2.1135 -6.1548 25 7 2.8270 1.5845 -7.2042 26 14 0.9962 3.4925 -6.3774 27 1 1.6973 4.8008 -6.3336 28 1 0.3156 3.3392 -7.6882 29 1 -0.0103 3.4336 -5.2871 30 1 -0.3634 0.5255 0.8831 31 1 -0.3634 0.5020 -0.8968 32 1 -0.3633 -1.0276 0.0136 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.8728 3.1453 1.1371 36 1 0.5072 2.0173 1.3139 37 1 1.4000 2.7218 3.7567 38 1 2.3676 0.3241 4.8927 39 1 3.7332 1.4521 4.7167 40 1 3.8066 3.5201 5.9811 41 1 3.0803 4.7171 8.0062 42 1 -0.1937 2.0104 8.4277 43 1 0.5292 0.8228 6.3958 44 1 0.5188 1.9346 -1.3635 45 1 1.7778 3.1633 -1.0922 46 1 0.7793 2.1232 -3.7711 47 1 2.0884 3.3220 -3.6397 48 1 2.6175 1.9095 -8.0937 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184344512.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:52 Heat of formation + Delta-G solvation = -25.004997 kcal Electronic energy + Delta-G solvation = -29012.356425 eV Core-core repulsion = 24788.965042 eV Total energy + Delta-G solvation = -4223.391383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.42225 -40.37078 -39.55567 -38.04393 -35.80249 -35.06984 -33.59989 -31.95718 -31.74447 -31.72091 -30.36585 -28.49574 -26.67691 -25.26871 -24.05613 -23.65665 -22.08266 -21.46825 -21.07943 -20.12211 -18.25426 -17.42092 -17.00650 -16.98278 -16.71299 -16.55651 -16.13072 -16.09300 -15.54857 -15.20671 -14.96016 -14.55581 -14.27248 -14.22039 -14.11550 -13.94224 -13.67667 -13.26970 -13.01330 -12.84278 -12.77106 -12.65275 -12.44067 -12.15899 -12.14677 -12.03074 -11.76181 -11.59528 -11.49152 -11.32732 -11.25068 -10.78838 -10.67820 -10.19725 -10.06787 -9.93934 -9.71899 -9.69787 -9.36363 -9.30833 -9.18362 -8.60557 -8.20496 -6.09076 -4.09551 0.44181 0.63052 2.52036 2.68931 3.17506 3.26782 3.33447 3.34833 3.68280 3.77344 3.86491 4.01741 4.06880 4.11728 4.32171 4.38741 4.61463 4.63533 4.66815 4.82368 4.96955 5.05242 5.09863 5.19055 5.25578 5.26057 5.30401 5.32571 5.39216 5.43611 5.53000 5.53422 5.60552 5.61351 5.77013 5.90827 5.91142 6.06064 6.11900 6.20498 6.27161 6.30210 6.41843 6.92803 6.95070 7.09351 7.14159 7.27802 7.65163 8.08748 8.42946 8.63474 8.95419 9.50543 11.04084 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.021018 B = 0.001735 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.841282 B =16137.971588 C =16236.640999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.039 3.961 3 N -0.520 5.520 4 C 0.033 3.967 5 C 0.515 3.485 6 O -0.513 6.513 7 N -0.735 5.735 8 C 0.164 3.836 9 C -0.118 4.118 10 C -0.070 4.070 11 C -0.155 4.155 12 C 0.104 3.896 13 F -0.139 7.139 14 C -0.156 4.156 15 C -0.071 4.071 16 C 0.054 3.946 17 C 0.024 3.976 18 H 0.106 0.894 19 C 0.253 3.747 20 N -0.471 5.471 21 C -0.005 4.005 22 C -0.526 4.526 23 H 0.074 0.926 24 C 0.071 3.929 25 N -0.897 5.897 26 Si 0.878 3.122 27 H -0.277 1.277 28 H -0.287 1.287 29 H -0.263 1.263 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.400 0.600 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.061 0.939 45 H 0.078 0.922 46 H 0.036 0.964 47 H 0.020 0.980 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.994 2.597 31.697 33.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.089 4.089 3 N -0.243 5.243 4 C -0.099 4.099 5 C 0.301 3.699 6 O -0.387 6.387 7 N -0.390 5.390 8 C 0.040 3.960 9 C -0.118 4.118 10 C -0.089 4.089 11 C -0.174 4.174 12 C 0.085 3.915 13 F -0.118 7.118 14 C -0.175 4.175 15 C -0.089 4.089 16 C -0.074 4.074 17 C 0.002 3.998 18 H 0.123 0.877 19 C -0.064 4.064 20 N -0.147 5.147 21 C -0.044 4.044 22 C -0.564 4.564 23 H 0.093 0.907 24 C -0.132 4.132 25 N -0.535 5.535 26 Si 0.705 3.295 27 H -0.203 1.203 28 H -0.213 1.213 29 H -0.188 1.188 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.087 0.913 37 H 0.234 0.766 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.154 0.846 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.079 0.921 45 H 0.097 0.903 46 H 0.054 0.946 47 H 0.039 0.961 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.222 2.228 31.623 32.513 hybrid contribution -2.282 1.217 -0.017 2.586 sum -9.504 3.445 31.606 33.183 Atomic orbital electron populations 1.22464 0.98650 1.02522 1.01718 1.22405 0.92194 0.89646 1.04634 1.61927 1.59763 1.02487 1.00156 1.21997 0.98635 0.99526 0.89710 1.20697 0.81841 0.83600 0.83786 1.90710 1.35069 1.27504 1.85397 1.46068 1.49691 1.37364 1.05841 1.20115 0.98187 0.96589 0.81067 1.19985 0.96662 0.97446 0.97741 1.21036 0.99245 0.93746 0.94841 1.21204 0.96943 1.02265 0.96981 1.17815 0.95602 0.93231 0.84866 1.91521 1.90373 1.80166 1.49692 1.21189 1.01569 0.96080 0.98625 1.21000 0.95318 0.99052 0.93573 1.22376 0.98188 0.98467 0.88373 1.18933 0.82443 1.02914 0.95540 0.87656 1.28655 0.94607 0.92422 0.90722 1.80988 1.12901 1.09806 1.11051 1.19639 0.97310 0.96027 0.91380 1.21031 1.25276 1.20836 0.89280 0.90746 1.24994 0.95852 0.96384 0.95921 1.69909 1.42707 1.42332 0.98537 0.86817 0.82070 0.82868 0.77759 1.20276 1.21313 1.18781 0.93209 0.91689 0.91937 0.89830 0.89052 0.87938 0.91339 0.76601 0.90436 0.90346 0.84557 0.84438 0.84474 0.84646 0.92052 0.90311 0.94591 0.96136 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.90 9.28 37.16 0.34 -1.56 16 2 C 0.04 0.48 5.57 -3.83 -0.02 0.46 16 3 N -0.52 -6.77 4.05 -236.06 -0.96 -7.73 16 4 C 0.03 0.31 5.23 -4.97 -0.03 0.29 16 5 C 0.51 5.49 7.54 -10.98 -0.08 5.41 16 6 O -0.51 -7.72 14.32 5.55 0.08 -7.64 16 7 N -0.73 -5.21 5.55 -61.47 -0.34 -5.55 16 8 C 0.16 1.10 5.80 -5.20 -0.03 1.07 16 9 C -0.12 -0.64 5.25 -104.62 -0.55 -1.19 16 10 C -0.07 -0.37 9.70 -39.59 -0.38 -0.76 16 11 C -0.16 -0.88 10.03 -39.51 -0.40 -1.28 16 12 C 0.10 0.69 7.30 -39.42 -0.29 0.40 16 13 F -0.14 -1.08 17.27 2.25 0.04 -1.04 16 14 C -0.16 -0.84 10.03 -39.51 -0.40 -1.24 16 15 C -0.07 -0.35 9.70 -39.60 -0.38 -0.73 16 16 C 0.05 0.73 4.21 -3.82 -0.02 0.71 16 17 C 0.02 0.42 2.20 -93.41 -0.21 0.22 16 18 H 0.11 1.83 6.61 -51.93 -0.34 1.49 16 19 C 0.25 5.38 13.62 -20.76 -0.28 5.10 16 20 N -0.47 -11.07 18.54 42.15 0.78 -10.29 16 21 C 0.00 -0.10 3.49 -27.88 -0.10 -0.19 16 22 C -0.53 -14.17 9.15 -34.44 -0.32 -14.49 16 23 H 0.07 2.22 7.84 -52.49 -0.41 1.81 16 24 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 25 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 26 Si 0.88 20.47 27.47 -169.99 -4.67 15.80 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 30 H 0.05 0.42 6.28 -51.93 -0.33 0.10 16 31 H 0.06 0.65 6.25 -51.93 -0.32 0.33 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.12 6.57 -51.93 -0.34 0.78 16 34 H 0.09 1.24 5.85 -51.93 -0.30 0.93 16 35 H 0.10 0.86 7.86 -51.93 -0.41 0.45 16 36 H 0.07 0.51 6.05 -51.93 -0.31 0.19 16 37 H 0.40 1.88 8.46 -40.82 -0.35 1.54 16 38 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 39 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 40 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 41 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 43 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 44 H 0.06 0.71 5.85 -51.93 -0.30 0.40 16 45 H 0.08 0.99 7.81 -51.93 -0.41 0.59 16 46 H 0.04 0.71 7.20 -51.93 -0.37 0.34 16 47 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 48 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 LS Contribution 400.53 15.07 6.04 6.04 Total: -1.00 -34.97 400.53 -8.20 -43.17 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.72 Total: -0.57 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -3.23 Total: -5.90 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 0.26 Total: -49.86 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.08 Total: -7.64 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.67 Total: 15.80 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.97 -8.20 -43.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184344512.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.164 kcal (2) G-P(sol) polarization free energy of solvation -34.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds