Wall clock time and date at job start Wed Apr 1 2020 04:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47042 * 2 1 4 4 C 1.46900 * 111.00324 * 62.07665 * 3 2 1 5 5 C 1.50706 * 109.46797 * 66.04521 * 4 3 2 6 6 O 1.21284 * 120.00053 * 0.02562 * 5 4 3 7 7 N 1.34781 * 119.99733 * 180.02562 * 5 4 3 8 8 C 1.46494 * 119.99652 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.46957 * 180.02562 * 8 7 5 10 10 C 1.38247 * 119.97220 * 269.72612 * 9 8 7 11 11 C 1.38198 * 120.02358 * 179.72263 * 10 9 8 12 12 C 1.38459 * 119.97436 * 0.57494 * 11 10 9 13 13 F 1.35099 * 120.02635 * 179.68065 * 12 11 10 14 14 C 1.38457 * 119.94806 * 359.70116 * 12 11 10 15 15 C 1.38200 * 119.97293 * 0.02562 * 14 12 11 16 16 C 1.46904 * 111.00096 * 298.12481 * 3 2 1 17 17 C 1.53006 * 109.46964 * 288.26504 * 16 3 2 18 18 H 1.08995 * 109.47016 * 57.05214 * 17 16 3 19 19 C 1.47204 * 109.47059 * 297.05345 * 17 16 3 20 20 N 4.48194 * 138.79178 * 314.48449 * 2 1 3 21 21 C 1.52994 * 109.46912 * 177.05428 * 17 16 3 22 22 C 1.50708 * 109.47047 * 184.99837 * 21 17 16 23 23 H 1.08001 * 119.99425 * 0.02562 * 22 21 17 24 24 C 1.37872 * 120.00096 * 179.97438 * 22 21 17 25 25 N 1.31515 * 120.00060 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00161 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47190 * 89.99732 * 26 24 22 28 28 H 1.48490 * 109.47280 * 209.99896 * 26 24 22 29 29 H 1.48504 * 109.47123 * 330.00119 * 26 24 22 30 30 H 1.08996 * 109.47438 * 300.75803 * 1 2 3 31 31 H 1.09004 * 109.47227 * 60.76165 * 1 2 3 32 32 H 1.09007 * 109.47002 * 180.75822 * 1 2 3 33 33 H 1.09001 * 109.47325 * 239.99600 * 2 1 3 34 34 H 1.09002 * 109.46966 * 119.99727 * 2 1 3 35 35 H 1.08993 * 109.47087 * 186.04737 * 4 3 2 36 36 H 1.09003 * 109.46885 * 306.05368 * 4 3 2 37 37 H 0.96994 * 120.00050 * 0.02562 * 7 5 4 38 38 H 1.09000 * 109.47814 * 300.00541 * 8 7 5 39 39 H 1.08999 * 109.47190 * 60.00183 * 8 7 5 40 40 H 1.08004 * 119.98764 * 359.97438 * 10 9 8 41 41 H 1.07998 * 120.01061 * 180.25216 * 11 10 9 42 42 H 1.07997 * 120.01233 * 179.97438 * 14 12 11 43 43 H 1.08000 * 119.98738 * 180.02562 * 15 14 12 44 44 H 1.09000 * 109.47180 * 48.25718 * 16 3 2 45 45 H 1.08995 * 109.47461 * 168.26610 * 16 3 2 46 46 H 1.08997 * 109.47470 * 304.99549 * 21 17 16 47 47 H 1.08998 * 109.47051 * 64.99975 * 21 17 16 48 48 H 0.96998 * 119.99830 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5896 2.0955 1.2117 5 6 2.2535 1.4805 2.4168 6 8 3.0107 0.5430 2.2797 7 7 2.0058 1.9723 3.6470 8 6 2.6507 1.3741 4.8185 9 6 2.2088 2.1022 6.0617 10 6 2.9281 3.1916 6.5166 11 6 2.5205 3.8636 7.6533 12 6 1.3981 3.4381 8.3434 13 9 1.0024 4.0903 9.4584 14 6 0.6817 2.3434 7.8900 15 6 1.0880 1.6765 6.7499 16 6 1.5856 2.0969 -1.2095 17 6 2.3613 1.5688 -2.4181 18 1 2.2108 0.4927 -2.5044 19 6 3.7952 1.8511 -2.2423 20 7 4.9018 2.0690 -2.1066 21 6 1.8577 2.2578 -3.6879 22 6 2.5339 1.6511 -4.8904 23 1 3.2507 0.8536 -4.7617 24 6 2.2366 2.1135 -6.1548 25 7 2.8270 1.5845 -7.2042 26 14 0.9962 3.4925 -6.3774 27 1 1.6973 4.8008 -6.3336 28 1 0.3156 3.3392 -7.6882 29 1 -0.0103 3.4336 -5.2871 30 1 -0.3634 0.5255 0.8831 31 1 -0.3634 0.5020 -0.8968 32 1 -0.3633 -1.0276 0.0136 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.8728 3.1453 1.1371 36 1 0.5072 2.0173 1.3139 37 1 1.4000 2.7218 3.7567 38 1 2.3676 0.3241 4.8927 39 1 3.7332 1.4521 4.7167 40 1 3.8066 3.5201 5.9811 41 1 3.0803 4.7171 8.0062 42 1 -0.1937 2.0104 8.4277 43 1 0.5292 0.8228 6.3958 44 1 0.5188 1.9346 -1.3635 45 1 1.7778 3.1633 -1.0922 46 1 0.7793 2.1232 -3.7711 47 1 2.0884 3.3220 -3.6397 48 1 2.6175 1.9095 -8.0937 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184344512.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:48 Heat of formation + Delta-G solvation = -48.466672 kcal Electronic energy + Delta-G solvation = -29013.373799 eV Core-core repulsion = 24788.965042 eV Total energy + Delta-G solvation = -4224.408758 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -49.93694 -41.10453 -40.12459 -39.10616 -37.25746 -35.81754 -35.40850 -33.73076 -32.34901 -32.13609 -31.17136 -29.77417 -27.73024 -26.06191 -25.20842 -24.05167 -23.28420 -22.56130 -21.97596 -20.98349 -18.87406 -18.71078 -18.32573 -17.95979 -17.49876 -17.36537 -16.96018 -16.63321 -16.47417 -16.08016 -15.95739 -15.66400 -15.35570 -14.96072 -14.89281 -14.65336 -14.53072 -14.46008 -14.33849 -14.10456 -13.76235 -13.54034 -13.47110 -13.27358 -13.25941 -13.09243 -12.80466 -12.72706 -12.61470 -12.50910 -12.27325 -11.98714 -11.82669 -11.67432 -11.60967 -11.48212 -11.24588 -10.73874 -10.70360 -10.12140 -10.04135 -9.68001 -9.07121 -8.21359 -6.27355 -0.00483 0.24283 1.45901 1.47854 1.58817 1.74167 2.06369 2.13677 2.18767 2.44324 2.66039 3.11091 3.15804 3.25258 3.38448 3.60428 3.72822 3.93365 3.95441 4.05909 4.17773 4.25121 4.29174 4.31545 4.45043 4.49430 4.59802 4.64119 4.68379 4.70447 4.73951 4.77188 4.88904 4.96003 4.97106 5.13514 5.16574 5.20592 5.25078 5.28276 5.44610 5.48146 5.48864 5.54351 5.67038 5.85981 6.09554 6.17442 6.31096 6.65056 6.80491 6.96274 7.36807 7.37343 8.95826 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.021018 B = 0.001735 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.841282 B =16137.971588 C =16236.640999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.042 3.958 3 N -0.548 5.548 4 C 0.034 3.966 5 C 0.512 3.488 6 O -0.566 6.566 7 N -0.717 5.717 8 C 0.167 3.833 9 C -0.115 4.115 10 C -0.072 4.072 11 C -0.159 4.159 12 C 0.085 3.915 13 F -0.150 7.150 14 C -0.157 4.157 15 C -0.068 4.068 16 C 0.066 3.934 17 C 0.026 3.974 18 H 0.106 0.894 19 C 0.264 3.736 20 N -0.521 5.521 21 C -0.001 4.001 22 C -0.531 4.531 23 H 0.023 0.977 24 C -0.001 4.001 25 N -0.957 5.957 26 Si 0.951 3.049 27 H -0.277 1.277 28 H -0.292 1.292 29 H -0.217 1.217 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.415 0.585 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.068 0.932 47 H 0.029 0.971 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.520 4.516 33.558 36.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.086 4.086 3 N -0.272 5.272 4 C -0.097 4.097 5 C 0.299 3.701 6 O -0.444 6.444 7 N -0.371 5.371 8 C 0.044 3.956 9 C -0.116 4.116 10 C -0.091 4.091 11 C -0.178 4.178 12 C 0.066 3.934 13 F -0.129 7.129 14 C -0.175 4.175 15 C -0.086 4.086 16 C -0.063 4.063 17 C 0.004 3.996 18 H 0.123 0.877 19 C -0.052 4.052 20 N -0.198 5.198 21 C -0.040 4.040 22 C -0.569 4.569 23 H 0.041 0.959 24 C -0.197 4.197 25 N -0.597 5.597 26 Si 0.774 3.226 27 H -0.202 1.202 28 H -0.218 1.218 29 H -0.139 1.139 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.138 0.862 36 H 0.119 0.881 37 H 0.252 0.748 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.163 0.837 41 H 0.165 0.835 42 H 0.169 0.831 43 H 0.170 0.830 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.086 0.914 47 H 0.048 0.952 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.783 4.172 33.552 35.489 hybrid contribution -1.071 0.515 -0.543 1.306 sum -11.853 4.687 33.009 35.385 Atomic orbital electron populations 1.22374 0.96168 1.03182 1.02701 1.22269 0.94163 0.89354 1.02810 1.61743 1.61223 1.02894 1.01291 1.22102 1.00315 0.99682 0.87575 1.20989 0.81184 0.82944 0.84937 1.90703 1.37521 1.29933 1.86201 1.45915 1.49066 1.37128 1.04985 1.20051 0.97493 0.96672 0.81431 1.19873 0.97026 0.97448 0.97268 1.21150 0.99487 0.93659 0.94797 1.21347 0.96829 1.02629 0.96955 1.18086 0.96388 0.93946 0.84965 1.91491 1.90554 1.80493 1.50327 1.21374 1.01855 0.95595 0.98715 1.21161 0.95061 0.99248 0.93159 1.22259 0.98702 0.98850 0.86459 1.19095 0.80742 1.02962 0.96831 0.87667 1.29484 0.95393 0.91068 0.89254 1.80979 1.14482 1.11532 1.12855 1.19586 0.98387 0.96077 0.89908 1.21417 1.24200 1.19436 0.91875 0.95864 1.26105 0.98494 0.99659 0.95416 1.70108 1.45431 1.44930 0.99261 0.85659 0.79864 0.78269 0.78857 1.20232 1.21793 1.13895 0.91372 0.91256 0.91629 0.91979 0.90667 0.86160 0.88063 0.74836 0.90734 0.91594 0.83719 0.83475 0.83114 0.83025 0.88974 0.88795 0.91403 0.95229 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.99 9.28 71.98 0.67 -2.33 16 2 C 0.04 0.97 5.57 86.30 0.48 1.45 16 3 N -0.55 -12.96 4.05 -900.77 -3.65 -16.60 16 4 C 0.03 0.53 5.23 85.56 0.45 0.98 16 5 C 0.51 9.98 7.54 87.66 0.66 10.64 16 6 O -0.57 -16.93 14.32 -3.04 -0.04 -16.97 16 7 N -0.72 -8.51 5.55 -466.78 -2.59 -11.10 16 8 C 0.17 2.03 5.80 85.64 0.50 2.53 16 9 C -0.12 -1.05 5.25 -19.86 -0.10 -1.15 16 10 C -0.07 -0.66 9.70 22.26 0.22 -0.44 16 11 C -0.16 -1.59 10.03 22.31 0.22 -1.37 16 12 C 0.09 1.02 7.30 22.37 0.16 1.18 16 13 F -0.15 -2.23 17.27 44.97 0.78 -1.45 16 14 C -0.16 -1.41 10.03 22.31 0.22 -1.18 16 15 C -0.07 -0.52 9.70 22.26 0.22 -0.30 16 16 C 0.07 1.51 4.21 86.30 0.36 1.87 16 17 C 0.03 0.88 2.20 -12.60 -0.03 0.85 16 18 H 0.11 3.62 6.61 -2.39 -0.02 3.60 16 19 C 0.26 11.27 13.62 89.44 1.22 12.49 16 20 N -0.52 -25.04 18.54 20.01 0.37 -24.67 16 21 C 0.00 -0.02 3.49 29.85 0.10 0.08 16 22 C -0.53 -28.87 9.15 25.60 0.23 -28.63 16 23 H 0.02 1.45 7.84 -2.91 -0.02 1.42 16 24 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 25 N -0.96 -59.67 13.96 21.45 0.30 -59.37 16 26 Si 0.95 40.82 27.47 68.60 1.88 42.70 16 27 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 28 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 29 H -0.22 -7.67 6.54 99.48 0.65 -7.02 16 30 H 0.07 0.84 6.28 -2.39 -0.02 0.83 16 31 H 0.07 1.07 6.25 -2.39 -0.01 1.06 16 32 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.06 1.66 6.57 -2.39 -0.02 1.65 16 34 H 0.08 2.02 5.85 -2.39 -0.01 2.01 16 35 H 0.12 1.49 7.86 -2.39 -0.02 1.47 16 36 H 0.10 0.95 6.05 -2.39 -0.01 0.94 16 37 H 0.41 2.53 8.46 -92.71 -0.78 1.74 16 38 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 39 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 40 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 41 H 0.15 1.10 8.06 -2.91 -0.02 1.07 16 42 H 0.15 0.87 8.06 -2.91 -0.02 0.85 16 43 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 44 H 0.09 1.59 5.85 -2.39 -0.01 1.58 16 45 H 0.09 1.92 7.81 -2.39 -0.02 1.90 16 46 H 0.07 2.32 7.20 -2.39 -0.02 2.30 16 47 H 0.03 1.14 7.57 -2.39 -0.02 1.12 16 48 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -80.93 400.53 3.25 -77.68 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.16 Total: 12.69 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 6.05 Total: -2.91 kcal Atomic # 7 Polarization: -106.17 SS G_CDS: -5.57 Total: -111.74 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.04 Total: -16.97 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.78 Total: -1.45 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 1.88 Total: 42.70 kcal Total: -80.93 3.25 -77.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184344512.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.212 kcal (2) G-P(sol) polarization free energy of solvation -80.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds