Wall clock time and date at job start Wed Apr 1 2020 04:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46906 * 109.47117 * 2 1 4 4 C 1.46894 * 110.99666 * 295.01150 * 3 2 1 5 5 C 1.50696 * 109.47635 * 288.24730 * 4 3 2 6 6 O 1.21287 * 119.99732 * 354.31836 * 5 4 3 7 7 N 1.34775 * 120.00528 * 174.31244 * 5 4 3 8 8 C 1.46500 * 120.00495 * 180.02562 * 7 5 4 9 9 C 1.50694 * 109.47251 * 180.02562 * 8 7 5 10 10 C 1.38251 * 119.97636 * 269.72718 * 9 8 7 11 11 C 1.38199 * 120.02646 * 179.73018 * 10 9 8 12 12 C 1.38463 * 119.97059 * 0.56139 * 11 10 9 13 13 F 1.35102 * 120.02262 * 179.68356 * 12 11 10 14 14 C 1.38460 * 119.95135 * 359.71389 * 12 11 10 15 15 C 1.38197 * 119.97356 * 359.97438 * 14 12 11 16 16 C 1.46898 * 110.99977 * 58.96828 * 3 2 1 17 17 C 1.53000 * 109.47312 * 66.04379 * 16 3 2 18 18 H 1.09005 * 109.47057 * 305.00110 * 17 16 3 19 19 C 1.47197 * 109.46870 * 64.99774 * 17 16 3 20 20 N 4.43034 * 136.05582 * 52.11116 * 2 1 3 21 21 C 1.52993 * 109.47104 * 184.99853 * 17 16 3 22 22 C 1.50705 * 109.46993 * 174.99986 * 21 17 16 23 23 H 1.07997 * 119.99706 * 0.02562 * 22 21 17 24 24 C 1.37873 * 120.00009 * 179.72595 * 22 21 17 25 25 N 1.31517 * 120.00118 * 0.27766 * 24 22 21 26 26 Si 1.86797 * 120.00015 * 180.27677 * 24 22 21 27 27 H 1.48499 * 109.47289 * 90.00144 * 26 24 22 28 28 H 1.48508 * 109.47228 * 209.99977 * 26 24 22 29 29 H 1.48494 * 109.47423 * 329.99734 * 26 24 22 30 30 H 1.09001 * 109.47411 * 179.72282 * 1 2 3 31 31 H 1.09005 * 109.46754 * 299.72168 * 1 2 3 32 32 H 1.09004 * 109.47478 * 59.72075 * 1 2 3 33 33 H 1.09001 * 109.46685 * 240.00131 * 2 1 3 34 34 H 1.09000 * 109.47302 * 119.99905 * 2 1 3 35 35 H 1.08996 * 109.47762 * 48.25405 * 4 3 2 36 36 H 1.09005 * 109.47002 * 168.25281 * 4 3 2 37 37 H 0.97003 * 119.99939 * 0.02562 * 7 5 4 38 38 H 1.09006 * 109.47052 * 300.00361 * 8 7 5 39 39 H 1.08996 * 109.46757 * 60.00105 * 8 7 5 40 40 H 1.07999 * 119.98287 * 359.97438 * 10 9 8 41 41 H 1.08000 * 120.01009 * 180.25475 * 11 10 9 42 42 H 1.08002 * 120.00920 * 179.97438 * 14 12 11 43 43 H 1.08002 * 119.98461 * 180.02562 * 15 14 12 44 44 H 1.09001 * 109.47094 * 306.04702 * 16 3 2 45 45 H 1.08996 * 109.46901 * 186.04699 * 16 3 2 46 46 H 1.08998 * 109.46805 * 55.00525 * 21 17 16 47 47 H 1.08998 * 109.47280 * 294.99953 * 21 17 16 48 48 H 0.96996 * 120.00299 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6484 2.0746 -1.2428 5 6 2.4723 1.5337 -2.3828 6 8 3.3587 0.7351 -2.1649 7 7 2.2241 1.9373 -3.6446 8 6 3.0247 1.4111 -4.7529 9 6 2.5491 2.0170 -6.0481 10 6 1.5565 1.3920 -6.7798 11 6 1.1157 1.9497 -7.9649 12 6 1.6767 3.1289 -8.4252 13 9 1.2511 3.6717 -9.5869 14 6 2.6748 3.7510 -7.6945 15 6 3.1095 3.1948 -6.5064 16 6 1.5286 2.1170 1.1751 17 6 2.1387 1.5152 2.4426 18 1 1.9262 0.4466 2.4761 19 6 3.5956 1.7257 2.4334 20 7 4.7199 1.8881 2.4264 21 6 1.5330 2.1945 3.6724 22 6 2.0412 1.5196 4.9204 23 1 2.7278 0.6895 4.8439 24 6 1.6343 1.9658 6.1598 25 7 0.7984 2.9769 6.2529 26 14 2.2702 1.1342 7.7069 27 1 3.5190 1.8037 8.1512 28 1 1.2470 1.2337 8.7786 29 1 2.5499 -0.2958 7.4210 30 1 -0.3634 -1.0276 -0.0050 31 1 -0.3633 0.5095 0.8925 32 1 -0.3634 0.5182 -0.8875 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5909 1.9091 -1.4483 36 1 1.8347 3.1432 -1.1350 37 1 1.5153 2.5762 -3.8188 38 1 4.0731 1.6652 -4.5965 39 1 2.9162 0.3274 -4.7969 40 1 1.1227 0.4695 -6.4230 41 1 0.3374 1.4633 -8.5342 42 1 3.1133 4.6706 -8.0529 43 1 3.8876 3.6802 -5.9361 44 1 0.4423 2.0404 1.2232 45 1 1.8157 3.1655 1.0961 46 1 0.4466 2.1151 3.6331 47 1 1.8203 3.2458 3.6852 48 1 0.5119 3.2906 7.1248 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184344529.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:57 Heat of formation + Delta-G solvation = -30.052690 kcal Electronic energy + Delta-G solvation = -28942.587953 eV Core-core repulsion = 24718.977685 eV Total energy + Delta-G solvation = -4223.610267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.39965 -40.29302 -39.49275 -38.02904 -35.71584 -35.02387 -33.57478 -31.87348 -31.72052 -31.61389 -30.34304 -28.16504 -26.45757 -25.17796 -24.03675 -23.63181 -22.11044 -21.78081 -20.99478 -20.00767 -18.23062 -17.36191 -16.98073 -16.85120 -16.65678 -16.32458 -16.07409 -16.02218 -15.51807 -15.04940 -14.89154 -14.55117 -14.39836 -14.13559 -14.11070 -13.90947 -13.65938 -13.18740 -12.87144 -12.81518 -12.70037 -12.55842 -12.29063 -12.11700 -12.03103 -11.90688 -11.60316 -11.56175 -11.40949 -11.19349 -11.04340 -10.68447 -10.64969 -10.52685 -10.10682 -9.95905 -9.69426 -9.52116 -9.32025 -9.23520 -9.14322 -8.44553 -8.13654 -6.08817 -4.11471 0.46743 0.65455 2.59403 2.72931 3.21319 3.31071 3.37586 3.41364 3.70567 3.81253 3.91719 4.07483 4.10057 4.14120 4.34448 4.42732 4.65801 4.67190 4.70552 4.92102 5.01792 5.11751 5.13085 5.22141 5.29618 5.29821 5.34776 5.36156 5.45752 5.47007 5.55308 5.59570 5.63485 5.72130 5.87550 5.93721 5.94862 6.13233 6.17287 6.29428 6.30342 6.43520 6.53114 6.99794 7.16833 7.33673 7.42771 7.54013 7.86968 8.15637 8.24707 8.67081 8.93401 9.53999 11.02069 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.026177 B = 0.001648 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.400923 B =16987.441676 C =17092.036351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.045 3.955 3 N -0.521 5.521 4 C 0.033 3.967 5 C 0.513 3.487 6 O -0.512 6.512 7 N -0.736 5.736 8 C 0.164 3.836 9 C -0.117 4.117 10 C -0.071 4.071 11 C -0.156 4.156 12 C 0.104 3.896 13 F -0.139 7.139 14 C -0.155 4.155 15 C -0.070 4.070 16 C 0.058 3.942 17 C 0.012 3.988 18 H 0.101 0.899 19 C 0.255 3.745 20 N -0.477 5.477 21 C 0.032 3.968 22 C -0.525 4.525 23 H 0.057 0.943 24 C 0.062 3.938 25 N -0.892 5.892 26 Si 0.891 3.109 27 H -0.280 1.280 28 H -0.286 1.286 29 H -0.273 1.273 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.400 0.600 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.061 0.939 45 H 0.079 0.921 46 H 0.037 0.963 47 H 0.026 0.974 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.958 -0.572 -29.995 30.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.082 4.082 3 N -0.244 5.244 4 C -0.099 4.099 5 C 0.299 3.701 6 O -0.385 6.385 7 N -0.391 5.391 8 C 0.040 3.960 9 C -0.118 4.118 10 C -0.089 4.089 11 C -0.175 4.175 12 C 0.084 3.916 13 F -0.118 7.118 14 C -0.174 4.174 15 C -0.089 4.089 16 C -0.070 4.070 17 C -0.010 4.010 18 H 0.119 0.881 19 C -0.062 4.062 20 N -0.154 5.154 21 C -0.006 4.006 22 C -0.563 4.563 23 H 0.075 0.925 24 C -0.139 4.139 25 N -0.531 5.531 26 Si 0.719 3.281 27 H -0.207 1.207 28 H -0.211 1.211 29 H -0.197 1.197 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.234 0.766 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.079 0.921 45 H 0.098 0.902 46 H 0.055 0.945 47 H 0.044 0.956 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.172 -0.824 -29.708 29.799 hybrid contribution -1.452 0.068 0.470 1.527 sum -3.624 -0.756 -29.238 29.472 Atomic orbital electron populations 1.22474 0.98385 1.02559 1.02067 1.22263 0.92372 0.89749 1.03837 1.61903 1.59804 1.02389 1.00283 1.21985 0.97708 1.00171 0.90013 1.20759 0.84571 0.81615 0.83154 1.90737 1.31206 1.32846 1.83744 1.46087 1.38483 1.48384 1.06158 1.20106 0.95651 0.98392 0.81802 1.19993 0.98194 0.96321 0.97271 1.21007 0.95141 0.99545 0.93249 1.21190 1.02318 0.95658 0.98285 1.17816 0.96449 0.93888 0.83398 1.91521 1.88893 1.85405 1.45950 1.21200 0.98131 1.01829 0.96234 1.21030 0.98749 0.94362 0.94753 1.22347 0.98380 0.98049 0.88222 1.19213 0.82375 1.02810 0.96594 0.88146 1.28805 0.94730 0.92166 0.90536 1.80978 1.13347 1.09929 1.11160 1.19166 0.96491 0.96133 0.88851 1.21146 1.27765 1.16641 0.90732 0.92481 1.24942 0.94901 0.94942 0.99160 1.69934 1.32923 1.25734 1.24506 0.86597 0.78631 0.80065 0.82818 1.20653 1.21144 1.19740 0.91988 0.91257 0.93133 0.90341 0.89762 0.91379 0.87850 0.76633 0.90421 0.90478 0.84641 0.84479 0.84452 0.84573 0.92121 0.90248 0.94492 0.95586 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.01 9.26 37.16 0.34 -1.67 16 2 C 0.05 0.58 5.52 -3.82 -0.02 0.56 16 3 N -0.52 -7.07 4.01 -236.08 -0.95 -8.01 16 4 C 0.03 0.33 5.34 -4.98 -0.03 0.30 16 5 C 0.51 5.74 7.41 -10.99 -0.08 5.66 16 6 O -0.51 -8.10 15.12 5.55 0.08 -8.02 16 7 N -0.74 -5.50 5.55 -61.47 -0.34 -5.84 16 8 C 0.16 1.16 5.80 -5.20 -0.03 1.13 16 9 C -0.12 -0.67 5.25 -104.62 -0.55 -1.22 16 10 C -0.07 -0.37 9.70 -39.59 -0.38 -0.75 16 11 C -0.16 -0.87 10.03 -39.51 -0.40 -1.27 16 12 C 0.10 0.70 7.30 -39.42 -0.29 0.41 16 13 F -0.14 -1.11 17.27 2.25 0.04 -1.07 16 14 C -0.16 -0.90 10.03 -39.51 -0.40 -1.30 16 15 C -0.07 -0.38 9.70 -39.59 -0.38 -0.77 16 16 C 0.06 0.83 4.05 -3.82 -0.02 0.82 16 17 C 0.01 0.22 2.13 -93.41 -0.20 0.02 16 18 H 0.10 1.77 6.36 -51.93 -0.33 1.44 16 19 C 0.25 5.50 13.67 -20.76 -0.28 5.22 16 20 N -0.48 -11.30 18.54 42.15 0.78 -10.52 16 21 C 0.03 0.74 4.42 -27.88 -0.12 0.61 16 22 C -0.52 -13.94 8.60 -34.44 -0.30 -14.24 16 23 H 0.06 1.52 7.59 -52.49 -0.40 1.13 16 24 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 25 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 26 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.76 6.27 -51.93 -0.33 0.44 16 32 H 0.05 0.45 6.29 -51.93 -0.33 0.12 16 33 H 0.08 1.05 6.54 -51.93 -0.34 0.71 16 34 H 0.08 1.16 6.42 -51.93 -0.33 0.83 16 35 H 0.07 0.54 5.98 -51.93 -0.31 0.23 16 36 H 0.10 0.92 7.81 -51.93 -0.41 0.52 16 37 H 0.40 2.03 8.46 -40.82 -0.35 1.68 16 38 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 39 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 40 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 42 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 43 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 44 H 0.06 0.77 5.97 -51.93 -0.31 0.46 16 45 H 0.08 1.12 7.86 -51.93 -0.41 0.71 16 46 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 404.98 15.07 6.10 6.10 Total: -1.00 -33.89 404.98 -8.56 -42.45 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.77 Total: -1.98 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -3.23 Total: -4.85 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.23 Total: -48.97 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.08 Total: -8.02 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.89 -8.56 -42.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184344529.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.395 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds