Wall clock time and date at job start Wed Apr 1 2020 04:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46906 * 109.47117 * 2 1 4 4 C 1.46894 * 110.99666 * 295.01150 * 3 2 1 5 5 C 1.50696 * 109.47635 * 288.24730 * 4 3 2 6 6 O 1.21287 * 119.99732 * 354.31836 * 5 4 3 7 7 N 1.34775 * 120.00528 * 174.31244 * 5 4 3 8 8 C 1.46500 * 120.00495 * 180.02562 * 7 5 4 9 9 C 1.50694 * 109.47251 * 180.02562 * 8 7 5 10 10 C 1.38251 * 119.97636 * 269.72718 * 9 8 7 11 11 C 1.38199 * 120.02646 * 179.73018 * 10 9 8 12 12 C 1.38463 * 119.97059 * 0.56139 * 11 10 9 13 13 F 1.35102 * 120.02262 * 179.68356 * 12 11 10 14 14 C 1.38460 * 119.95135 * 359.71389 * 12 11 10 15 15 C 1.38197 * 119.97356 * 359.97438 * 14 12 11 16 16 C 1.46898 * 110.99977 * 58.96828 * 3 2 1 17 17 C 1.53000 * 109.47312 * 66.04379 * 16 3 2 18 18 H 1.09005 * 109.47057 * 305.00110 * 17 16 3 19 19 C 1.47197 * 109.46870 * 64.99774 * 17 16 3 20 20 N 4.43034 * 136.05582 * 52.11116 * 2 1 3 21 21 C 1.52993 * 109.47104 * 184.99853 * 17 16 3 22 22 C 1.50705 * 109.46993 * 174.99986 * 21 17 16 23 23 H 1.07997 * 119.99706 * 0.02562 * 22 21 17 24 24 C 1.37873 * 120.00009 * 179.72595 * 22 21 17 25 25 N 1.31517 * 120.00118 * 0.27766 * 24 22 21 26 26 Si 1.86797 * 120.00015 * 180.27677 * 24 22 21 27 27 H 1.48499 * 109.47289 * 90.00144 * 26 24 22 28 28 H 1.48508 * 109.47228 * 209.99977 * 26 24 22 29 29 H 1.48494 * 109.47423 * 329.99734 * 26 24 22 30 30 H 1.09001 * 109.47411 * 179.72282 * 1 2 3 31 31 H 1.09005 * 109.46754 * 299.72168 * 1 2 3 32 32 H 1.09004 * 109.47478 * 59.72075 * 1 2 3 33 33 H 1.09001 * 109.46685 * 240.00131 * 2 1 3 34 34 H 1.09000 * 109.47302 * 119.99905 * 2 1 3 35 35 H 1.08996 * 109.47762 * 48.25405 * 4 3 2 36 36 H 1.09005 * 109.47002 * 168.25281 * 4 3 2 37 37 H 0.97003 * 119.99939 * 0.02562 * 7 5 4 38 38 H 1.09006 * 109.47052 * 300.00361 * 8 7 5 39 39 H 1.08996 * 109.46757 * 60.00105 * 8 7 5 40 40 H 1.07999 * 119.98287 * 359.97438 * 10 9 8 41 41 H 1.08000 * 120.01009 * 180.25475 * 11 10 9 42 42 H 1.08002 * 120.00920 * 179.97438 * 14 12 11 43 43 H 1.08002 * 119.98461 * 180.02562 * 15 14 12 44 44 H 1.09001 * 109.47094 * 306.04702 * 16 3 2 45 45 H 1.08996 * 109.46901 * 186.04699 * 16 3 2 46 46 H 1.08998 * 109.46805 * 55.00525 * 21 17 16 47 47 H 1.08998 * 109.47280 * 294.99953 * 21 17 16 48 48 H 0.96996 * 120.00299 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6484 2.0746 -1.2428 5 6 2.4723 1.5337 -2.3828 6 8 3.3587 0.7351 -2.1649 7 7 2.2241 1.9373 -3.6446 8 6 3.0247 1.4111 -4.7529 9 6 2.5491 2.0170 -6.0481 10 6 1.5565 1.3920 -6.7798 11 6 1.1157 1.9497 -7.9649 12 6 1.6767 3.1289 -8.4252 13 9 1.2511 3.6717 -9.5869 14 6 2.6748 3.7510 -7.6945 15 6 3.1095 3.1948 -6.5064 16 6 1.5286 2.1170 1.1751 17 6 2.1387 1.5152 2.4426 18 1 1.9262 0.4466 2.4761 19 6 3.5956 1.7257 2.4334 20 7 4.7199 1.8881 2.4264 21 6 1.5330 2.1945 3.6724 22 6 2.0412 1.5196 4.9204 23 1 2.7278 0.6895 4.8439 24 6 1.6343 1.9658 6.1598 25 7 0.7984 2.9769 6.2529 26 14 2.2702 1.1342 7.7069 27 1 3.5190 1.8037 8.1512 28 1 1.2470 1.2337 8.7786 29 1 2.5499 -0.2958 7.4210 30 1 -0.3634 -1.0276 -0.0050 31 1 -0.3633 0.5095 0.8925 32 1 -0.3634 0.5182 -0.8875 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5909 1.9091 -1.4483 36 1 1.8347 3.1432 -1.1350 37 1 1.5153 2.5762 -3.8188 38 1 4.0731 1.6652 -4.5965 39 1 2.9162 0.3274 -4.7969 40 1 1.1227 0.4695 -6.4230 41 1 0.3374 1.4633 -8.5342 42 1 3.1133 4.6706 -8.0529 43 1 3.8876 3.6802 -5.9361 44 1 0.4423 2.0404 1.2232 45 1 1.8157 3.1655 1.0961 46 1 0.4466 2.1151 3.6331 47 1 1.8203 3.2458 3.6852 48 1 0.5119 3.2906 7.1248 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184344529.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:56 Heat of formation + Delta-G solvation = -51.043600 kcal Electronic energy + Delta-G solvation = -28943.498187 eV Core-core repulsion = 24718.977685 eV Total energy + Delta-G solvation = -4224.520502 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -49.93165 -41.06367 -40.11321 -39.14331 -37.24145 -35.80175 -35.44853 -33.54615 -32.32350 -32.13129 -31.18548 -29.43678 -27.61393 -26.05980 -25.29438 -24.04624 -23.66869 -22.54135 -21.95628 -20.92685 -18.70700 -18.50610 -18.30410 -17.98581 -17.48974 -17.33367 -16.99040 -16.63254 -16.55977 -16.08352 -15.96791 -15.68453 -15.35308 -14.96351 -14.75323 -14.59788 -14.50517 -14.40071 -14.32945 -13.95072 -13.71200 -13.55785 -13.48042 -13.26615 -13.20232 -12.99394 -12.79210 -12.67499 -12.60878 -12.56978 -12.35469 -12.30995 -11.98144 -11.84553 -11.48178 -11.36162 -11.15393 -10.80402 -10.52909 -10.11721 -10.03850 -9.67689 -9.08416 -8.17635 -6.24801 -0.00024 0.24806 1.40350 1.43178 1.51864 1.75547 2.06125 2.13701 2.18716 2.43097 2.66373 3.12372 3.18250 3.25667 3.39842 3.60967 3.73299 3.93796 3.95868 4.07353 4.18123 4.23777 4.29211 4.30680 4.44668 4.50459 4.57947 4.63943 4.68974 4.73314 4.77452 4.81395 4.96151 4.96560 4.97465 5.13928 5.15004 5.20955 5.24598 5.45572 5.48211 5.49415 5.52258 5.65919 5.81826 5.86446 6.05664 6.15668 6.25970 6.65941 6.85789 6.97191 7.38387 7.43281 8.92979 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.026177 B = 0.001648 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.400923 B =16987.441676 C =17092.036351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.048 3.952 3 N -0.545 5.545 4 C 0.032 3.968 5 C 0.513 3.487 6 O -0.566 6.566 7 N -0.717 5.717 8 C 0.167 3.833 9 C -0.115 4.115 10 C -0.068 4.068 11 C -0.157 4.157 12 C 0.085 3.915 13 F -0.150 7.150 14 C -0.159 4.159 15 C -0.072 4.072 16 C 0.070 3.930 17 C 0.020 3.980 18 H 0.112 0.888 19 C 0.265 3.735 20 N -0.519 5.519 21 C 0.041 3.959 22 C -0.539 4.539 23 H 0.049 0.951 24 C 0.014 3.986 25 N -0.920 5.920 26 Si 0.944 3.056 27 H -0.285 1.285 28 H -0.277 1.277 29 H -0.267 1.267 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.415 0.585 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.040 0.960 47 H 0.004 0.996 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.437 -0.714 -31.057 31.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.079 4.079 3 N -0.269 5.269 4 C -0.098 4.098 5 C 0.300 3.700 6 O -0.443 6.443 7 N -0.372 5.372 8 C 0.044 3.956 9 C -0.116 4.116 10 C -0.087 4.087 11 C -0.176 4.176 12 C 0.066 3.934 13 F -0.129 7.129 14 C -0.177 4.177 15 C -0.091 4.091 16 C -0.058 4.058 17 C -0.002 4.002 18 H 0.129 0.871 19 C -0.051 4.051 20 N -0.196 5.196 21 C 0.002 3.998 22 C -0.577 4.577 23 H 0.068 0.932 24 C -0.185 4.185 25 N -0.560 5.560 26 Si 0.770 3.230 27 H -0.212 1.212 28 H -0.202 1.202 29 H -0.191 1.191 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.137 0.863 37 H 0.251 0.749 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.169 0.831 41 H 0.169 0.831 42 H 0.166 0.834 43 H 0.164 0.836 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.058 0.942 47 H 0.022 0.978 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.684 -0.945 -30.810 31.044 hybrid contribution -0.974 0.110 0.731 1.223 sum -4.657 -0.835 -30.079 30.449 Atomic orbital electron populations 1.22388 0.96186 1.03334 1.02694 1.22170 0.94099 0.89185 1.02475 1.61742 1.60970 1.02893 1.01256 1.22090 0.99160 1.00490 0.88058 1.20974 0.83878 0.80884 0.84254 1.90724 1.33560 1.35433 1.84623 1.45926 1.38299 1.47712 1.05222 1.20054 0.95093 0.98304 0.82186 1.19875 0.98563 0.96479 0.96698 1.21165 0.94738 0.99896 0.92885 1.21372 1.02468 0.95279 0.98439 1.18088 0.97238 0.94649 0.83419 1.91492 1.89104 1.85657 1.46607 1.21350 0.97926 1.02250 0.96202 1.21151 0.98860 0.94320 0.94719 1.22170 0.99246 0.97755 0.86657 1.19228 0.80379 1.03327 0.97230 0.87085 1.29443 0.95370 0.90962 0.89297 1.80970 1.14702 1.11378 1.12575 1.18979 0.96628 0.94757 0.89439 1.21546 1.27292 1.16461 0.92409 0.93225 1.25642 0.95306 0.95622 1.01905 1.70011 1.33997 1.26831 1.25166 0.85759 0.77935 0.79339 0.79928 1.21181 1.20200 1.19112 0.91271 0.91727 0.91187 0.91232 0.91656 0.88206 0.86303 0.74872 0.91506 0.90810 0.83093 0.83139 0.83419 0.83632 0.89733 0.89889 0.94161 0.97795 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.32 9.26 71.98 0.67 -2.65 16 2 C 0.05 1.16 5.52 86.30 0.48 1.64 16 3 N -0.54 -13.88 4.01 -900.82 -3.61 -17.49 16 4 C 0.03 0.57 5.34 85.56 0.46 1.03 16 5 C 0.51 10.68 7.41 87.66 0.65 11.33 16 6 O -0.57 -17.77 15.12 -3.05 -0.05 -17.82 16 7 N -0.72 -9.24 5.55 -466.79 -2.59 -11.83 16 8 C 0.17 2.15 5.80 85.63 0.50 2.64 16 9 C -0.12 -1.11 5.25 -19.86 -0.10 -1.22 16 10 C -0.07 -0.57 9.70 22.26 0.22 -0.35 16 11 C -0.16 -1.50 10.03 22.31 0.22 -1.27 16 12 C 0.09 1.06 7.30 22.38 0.16 1.22 16 13 F -0.15 -2.29 17.27 44.97 0.78 -1.51 16 14 C -0.16 -1.64 10.03 22.31 0.22 -1.42 16 15 C -0.07 -0.68 9.70 22.26 0.22 -0.46 16 16 C 0.07 1.87 4.05 86.30 0.35 2.22 16 17 C 0.02 0.73 2.13 -12.60 -0.03 0.71 16 18 H 0.11 3.84 6.36 -2.38 -0.02 3.82 16 19 C 0.27 11.48 13.67 89.44 1.22 12.70 16 20 N -0.52 -24.80 18.54 20.00 0.37 -24.43 16 21 C 0.04 1.84 4.42 29.85 0.13 1.98 16 22 C -0.54 -28.59 8.60 25.60 0.22 -28.37 16 23 H 0.05 2.65 7.59 -2.91 -0.02 2.63 16 24 C 0.01 0.78 5.46 84.65 0.46 1.25 16 25 N -0.92 -52.12 13.29 21.45 0.28 -51.83 16 26 Si 0.94 43.59 29.54 68.60 2.03 45.61 16 27 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 28 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 29 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.22 6.27 -2.38 -0.01 1.21 16 32 H 0.07 0.96 6.29 -2.38 -0.02 0.94 16 33 H 0.07 1.81 6.54 -2.39 -0.02 1.79 16 34 H 0.06 1.77 6.42 -2.39 -0.02 1.76 16 35 H 0.10 1.15 5.98 -2.39 -0.01 1.13 16 36 H 0.12 1.75 7.81 -2.38 -0.02 1.73 16 37 H 0.41 2.98 8.46 -92.71 -0.78 2.20 16 38 H 0.07 1.04 8.08 -2.38 -0.02 1.02 16 39 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 40 H 0.15 0.76 8.06 -2.91 -0.02 0.74 16 41 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 42 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 43 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 44 H 0.08 1.88 5.97 -2.39 -0.01 1.86 16 45 H 0.08 2.17 7.86 -2.39 -0.02 2.15 16 46 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 48 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -73.68 404.98 3.47 -70.22 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 0.21 Total: 8.12 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 6.04 Total: 0.96 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -5.55 Total: -105.58 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.05 Total: -17.82 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.78 Total: -1.51 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -73.68 3.47 -70.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184344529.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.174 kcal (2) G-P(sol) polarization free energy of solvation -73.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds