Wall clock time and date at job start Wed Apr 1 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50694 * 120.00029 * 2 1 4 4 N 1.46506 * 109.47099 * 125.00197 * 3 2 1 5 5 C 1.46757 * 124.35024 * 269.95078 * 4 3 2 6 6 C 1.54685 * 105.53480 * 196.94427 * 5 4 3 7 7 C 1.54626 * 101.66865 * 334.74085 * 6 5 4 8 8 H 1.09000 * 110.48385 * 265.90477 * 7 6 5 9 9 N 1.46504 * 110.48814 * 143.39637 * 7 6 5 10 10 C 1.46506 * 119.99642 * 301.83983 * 9 7 6 11 11 C 1.34774 * 120.00156 * 121.83990 * 9 7 6 12 12 O 1.21585 * 120.00170 * 359.97438 * 11 9 7 13 13 N 1.34775 * 120.00044 * 180.02562 * 11 9 7 14 14 C 1.40188 * 120.00236 * 179.97438 * 13 11 9 15 15 C 1.40406 * 125.97578 * 359.97438 * 14 13 11 16 16 C 1.35236 * 107.87053 * 179.71741 * 15 14 13 17 17 N 1.34968 * 107.86005 * 0.42153 * 16 15 14 18 18 C 1.46499 * 125.97531 * 179.83904 * 17 16 15 19 19 C 1.50701 * 109.46992 * 124.71606 * 18 17 16 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99594 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99875 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47061 * 90.00257 * 23 21 19 25 25 H 1.48497 * 109.46906 * 209.99430 * 23 21 19 26 26 H 1.48498 * 109.47403 * 329.99876 * 23 21 19 27 27 N 1.31215 * 125.97350 * 179.97438 * 14 13 11 28 28 C 1.34421 * 124.34539 * 89.97585 * 4 3 2 29 29 O 1.21280 * 124.94580 * 359.53578 * 28 4 3 30 30 H 1.08000 * 119.99920 * 359.97438 * 1 2 3 31 31 H 1.08006 * 120.00148 * 180.02562 * 1 2 3 32 32 H 1.08000 * 119.99920 * 180.02562 * 2 1 3 33 33 H 1.08995 * 109.47092 * 5.00285 * 3 2 1 34 34 H 1.09004 * 109.47020 * 244.99828 * 3 2 1 35 35 H 1.09003 * 110.24382 * 316.03929 * 5 4 3 36 36 H 1.09005 * 110.24373 * 77.94856 * 5 4 3 37 37 H 1.09009 * 111.08565 * 216.62152 * 6 5 4 38 38 H 1.08995 * 110.94734 * 92.79746 * 6 5 4 39 39 H 1.08987 * 109.47082 * 269.99953 * 10 9 7 40 40 H 1.09000 * 109.46780 * 30.00515 * 10 9 7 41 41 H 1.09002 * 109.46832 * 149.99906 * 10 9 7 42 42 H 0.97007 * 119.99914 * 359.97438 * 13 11 9 43 43 H 1.08003 * 126.05987 * 359.94332 * 15 14 13 44 44 H 1.08002 * 126.07013 * 180.26487 * 16 15 14 45 45 H 1.09002 * 109.47391 * 4.71597 * 18 17 16 46 46 H 1.09001 * 109.46813 * 244.71653 * 18 17 16 47 47 H 0.97002 * 119.99739 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.6604 1.8441 2.4657 6 6 4.0173 2.0762 3.1713 7 6 4.9331 1.0796 2.4235 8 1 4.9851 0.1326 2.9606 9 7 6.2739 1.6447 2.2521 10 6 6.4484 2.9138 1.5411 11 6 7.3466 0.9972 2.7484 12 8 7.2017 -0.0557 3.3388 13 7 8.5799 1.5173 2.5912 14 6 9.6958 0.8441 3.1079 15 6 9.6737 -0.3732 3.8072 16 6 10.9484 -0.6899 4.1293 17 7 11.7493 0.2910 3.6624 18 6 13.2070 0.3488 3.7964 19 6 13.8312 0.4970 2.4328 20 1 13.2048 0.5440 1.5543 21 6 15.2021 0.5738 2.3069 22 7 15.7468 0.7037 1.1169 23 14 16.2855 0.4932 3.8264 24 1 16.6395 -0.9213 4.1075 25 1 17.5253 1.2765 3.5925 26 1 15.5533 1.0604 4.9872 27 7 10.9434 1.2414 3.0225 28 6 4.2626 0.8907 1.0806 29 8 4.7924 0.4104 0.1011 30 1 -0.5400 0.9353 0.0004 31 1 -0.5401 -0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1315 0.0896 34 1 2.6213 1.4025 -0.9314 35 1 2.1118 2.7824 2.3832 36 1 2.0709 1.1101 3.0151 37 1 3.9554 1.8293 4.2312 38 1 4.3594 3.1014 3.0305 39 1 6.5936 2.7181 0.4789 40 1 5.5616 3.5323 1.6789 41 1 7.3200 3.4351 1.9370 42 1 8.6956 2.3576 2.1204 43 1 8.7949 -0.9553 4.0427 44 1 11.2684 -1.5701 4.6671 45 1 13.5657 -0.5690 4.2624 46 1 13.4813 1.2023 4.4164 47 1 16.7113 0.7573 1.0283 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281397970.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:12 Heat of formation + Delta-G solvation = 76.300081 kcal Electronic energy + Delta-G solvation = -29856.581272 eV Core-core repulsion = 25657.502768 eV Total energy + Delta-G solvation = -4199.078504 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.35150 -40.58774 -39.47537 -36.84166 -36.18913 -34.91255 -34.51277 -33.21716 -31.53241 -30.87433 -29.34718 -28.11827 -27.29394 -26.83632 -26.17427 -23.09316 -22.30507 -21.48722 -20.77326 -20.24039 -19.60422 -19.28755 -18.26335 -17.33890 -17.00341 -16.67739 -16.59053 -16.18671 -15.86547 -15.63907 -14.99485 -14.66900 -14.46881 -14.32752 -14.02369 -13.84017 -13.71329 -13.48759 -13.29257 -13.07737 -12.91212 -12.69590 -12.61449 -12.49655 -12.32837 -12.19429 -12.09852 -11.81316 -11.50156 -11.14291 -10.75768 -10.64576 -10.36617 -10.10420 -9.97892 -9.97092 -9.73739 -9.49090 -9.19813 -8.88282 -8.73643 -8.13615 -7.44505 -6.20328 -4.22423 1.62308 1.89808 2.48829 2.57803 2.73825 3.03937 3.17268 3.23585 3.24739 3.34467 3.76150 3.93025 4.01281 4.13469 4.25603 4.33516 4.44199 4.48491 4.58336 4.71362 4.92910 4.97082 5.05298 5.07558 5.12218 5.16970 5.37871 5.39088 5.43779 5.44772 5.51963 5.73490 5.88596 5.99128 6.10834 6.24382 6.27560 6.37185 6.49723 6.59094 6.65553 6.74794 6.82181 7.30448 7.44184 7.76542 7.83709 7.87393 8.37243 8.50267 8.62120 8.90280 9.34637 10.92433 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027503 B = 0.001871 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.815630 B =14958.960272 C =15200.151977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.172 4.172 3 C 0.154 3.846 4 N -0.618 5.618 5 C 0.105 3.895 6 C -0.144 4.144 7 C 0.132 3.868 8 H 0.141 0.859 9 N -0.612 5.612 10 C 0.071 3.929 11 C 0.723 3.277 12 O -0.564 6.564 13 N -0.639 5.639 14 C 0.278 3.722 15 C -0.281 4.281 16 C 0.051 3.949 17 N -0.320 5.320 18 C 0.233 3.767 19 C -0.534 4.534 20 H 0.086 0.914 21 C 0.076 3.924 22 N -0.888 5.888 23 Si 0.873 3.127 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.264 1.264 27 N -0.299 5.299 28 C 0.507 3.493 29 O -0.508 6.508 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.408 0.592 43 H 0.163 0.837 44 H 0.169 0.831 45 H 0.049 0.951 46 H 0.042 0.958 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.680 5.250 4.266 32.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.191 4.191 3 C 0.032 3.968 4 N -0.353 5.353 5 C -0.018 4.018 6 C -0.183 4.183 7 C 0.023 3.977 8 H 0.158 0.842 9 N -0.350 5.350 10 C -0.072 4.072 11 C 0.423 3.577 12 O -0.439 6.439 13 N -0.290 5.290 14 C 0.024 3.976 15 C -0.313 4.313 16 C -0.098 4.098 17 N -0.102 5.102 18 C 0.114 3.886 19 C -0.572 4.572 20 H 0.104 0.896 21 C -0.128 4.128 22 N -0.525 5.525 23 Si 0.699 3.301 24 H -0.197 1.197 25 H -0.206 1.206 26 H -0.189 1.189 27 N -0.130 5.130 28 C 0.292 3.708 29 O -0.381 6.381 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.129 0.871 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.245 0.755 43 H 0.180 0.820 44 H 0.186 0.814 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -30.399 5.167 3.579 31.042 hybrid contribution 0.176 -0.223 0.539 0.609 sum -30.223 4.944 4.118 30.900 Atomic orbital electron populations 1.23883 0.95611 1.02149 0.99953 1.23364 0.96217 0.99249 1.00314 1.20489 0.91574 0.95450 0.89256 1.48216 1.12372 1.62900 1.11860 1.22139 0.97308 0.99956 0.82397 1.23103 0.93344 1.00749 1.01103 1.21533 0.81200 1.00526 0.94422 0.84174 1.46528 1.04406 1.23942 1.60127 1.21858 1.02953 0.84923 0.97516 1.15412 0.79689 0.83027 0.79528 1.90847 1.84050 1.22247 1.46727 1.41472 1.02700 1.25993 1.58838 1.18790 0.86326 0.93643 0.98890 1.21529 0.97712 0.99744 1.12280 1.22542 0.90667 0.95369 1.01250 1.48588 1.07596 1.14483 1.39542 1.20032 0.70632 0.98200 0.99778 1.21129 0.92470 1.51966 0.91658 0.89631 1.24839 0.97545 0.94313 0.96102 1.69878 1.11547 1.48794 1.22297 0.86902 0.80855 0.78840 0.83469 1.19731 1.20572 1.18870 1.77383 0.98637 1.15671 1.21295 1.21183 0.81970 0.77319 0.90324 1.90766 1.67975 1.42928 1.36464 0.88383 0.88157 0.87058 0.89724 0.89029 0.89963 0.90584 0.88106 0.89068 0.91824 0.90501 0.90562 0.75500 0.82000 0.81406 0.93344 0.94068 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.87 14.32 29.01 0.42 -0.45 16 2 C -0.17 -1.14 9.85 -36.03 -0.35 -1.49 16 3 C 0.15 0.96 6.37 -5.19 -0.03 0.93 16 4 N -0.62 -4.53 2.92 -173.66 -0.51 -5.04 16 5 C 0.11 0.43 7.35 -3.02 -0.02 0.41 16 6 C -0.14 -0.74 6.72 -24.99 -0.17 -0.90 16 7 C 0.13 1.29 3.33 -67.94 -0.23 1.06 16 8 H 0.14 1.57 6.97 -51.93 -0.36 1.21 16 9 N -0.61 -7.07 2.85 -179.68 -0.51 -7.58 16 10 C 0.07 0.59 9.45 59.85 0.57 1.16 16 11 C 0.72 11.33 8.25 -86.92 -0.72 10.62 16 12 O -0.56 -10.34 12.83 5.29 0.07 -10.27 16 13 N -0.64 -10.56 5.32 -15.51 -0.08 -10.64 16 14 C 0.28 5.74 8.11 -154.36 -1.25 4.48 16 15 C -0.28 -5.65 9.61 -39.84 -0.38 -6.03 16 16 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 17 N -0.32 -7.39 3.67 -62.56 -0.23 -7.62 16 18 C 0.23 5.58 5.33 -5.19 -0.03 5.56 16 19 C -0.53 -15.29 9.79 -34.44 -0.34 -15.63 16 20 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 21 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 22 N -0.89 -26.91 13.96 55.43 0.77 -26.13 16 23 Si 0.87 20.31 27.47 -169.99 -4.67 15.64 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 27 N -0.30 -7.00 12.42 31.44 0.39 -6.61 16 28 C 0.51 5.62 7.08 -10.86 -0.08 5.54 16 29 O -0.51 -8.01 17.59 5.56 0.10 -7.92 16 30 H 0.10 0.33 7.84 -52.49 -0.41 -0.08 16 31 H 0.10 0.44 8.06 -52.48 -0.42 0.02 16 32 H 0.11 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.08 0.31 7.79 -51.93 -0.40 -0.09 16 34 H 0.09 0.69 7.93 -51.93 -0.41 0.28 16 35 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.10 0.41 8.14 -51.92 -0.42 -0.01 16 38 H 0.09 0.39 6.27 -51.93 -0.33 0.06 16 39 H 0.06 0.60 8.14 -51.94 -0.42 0.18 16 40 H 0.08 0.43 6.35 -51.93 -0.33 0.10 16 41 H 0.08 0.56 6.36 -51.93 -0.33 0.23 16 42 H 0.41 5.66 6.55 -40.82 -0.27 5.39 16 43 H 0.16 3.18 5.91 -52.48 -0.31 2.87 16 44 H 0.17 2.62 8.06 -52.49 -0.42 2.20 16 45 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 46 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 47 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 392.02 15.07 5.91 5.91 Total: -1.00 -38.04 392.02 -8.14 -46.18 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.47 Total: 5.97 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: -2.91 Total: 8.11 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: -0.17 Total: -63.62 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.17 Total: -18.19 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.67 Total: 15.64 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.04 -8.14 -46.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281397970.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.477 kcal (2) G-P(sol) polarization free energy of solvation -38.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds