Wall clock time and date at job start Wed Apr 1 2020 06:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50694 * 120.00029 * 2 1 4 4 N 1.46506 * 109.47099 * 125.00197 * 3 2 1 5 5 C 1.46757 * 124.35024 * 269.95078 * 4 3 2 6 6 C 1.54685 * 105.53480 * 196.94427 * 5 4 3 7 7 C 1.54626 * 101.66865 * 334.74085 * 6 5 4 8 8 H 1.09000 * 110.48385 * 265.90477 * 7 6 5 9 9 N 1.46504 * 110.48814 * 143.39637 * 7 6 5 10 10 C 1.46506 * 119.99642 * 301.83983 * 9 7 6 11 11 C 1.34774 * 120.00156 * 121.83990 * 9 7 6 12 12 O 1.21585 * 120.00170 * 359.97438 * 11 9 7 13 13 N 1.34775 * 120.00044 * 180.02562 * 11 9 7 14 14 C 1.40188 * 120.00236 * 179.97438 * 13 11 9 15 15 C 1.40406 * 125.97578 * 359.97438 * 14 13 11 16 16 C 1.35236 * 107.87053 * 179.71741 * 15 14 13 17 17 N 1.34968 * 107.86005 * 0.42153 * 16 15 14 18 18 C 1.46499 * 125.97531 * 179.83904 * 17 16 15 19 19 C 1.50701 * 109.46992 * 124.71606 * 18 17 16 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99594 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99875 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47061 * 90.00257 * 23 21 19 25 25 H 1.48497 * 109.46906 * 209.99430 * 23 21 19 26 26 H 1.48498 * 109.47403 * 329.99876 * 23 21 19 27 27 N 1.31215 * 125.97350 * 179.97438 * 14 13 11 28 28 C 1.34421 * 124.34539 * 89.97585 * 4 3 2 29 29 O 1.21280 * 124.94580 * 359.53578 * 28 4 3 30 30 H 1.08000 * 119.99920 * 359.97438 * 1 2 3 31 31 H 1.08006 * 120.00148 * 180.02562 * 1 2 3 32 32 H 1.08000 * 119.99920 * 180.02562 * 2 1 3 33 33 H 1.08995 * 109.47092 * 5.00285 * 3 2 1 34 34 H 1.09004 * 109.47020 * 244.99828 * 3 2 1 35 35 H 1.09003 * 110.24382 * 316.03929 * 5 4 3 36 36 H 1.09005 * 110.24373 * 77.94856 * 5 4 3 37 37 H 1.09009 * 111.08565 * 216.62152 * 6 5 4 38 38 H 1.08995 * 110.94734 * 92.79746 * 6 5 4 39 39 H 1.08987 * 109.47082 * 269.99953 * 10 9 7 40 40 H 1.09000 * 109.46780 * 30.00515 * 10 9 7 41 41 H 1.09002 * 109.46832 * 149.99906 * 10 9 7 42 42 H 0.97007 * 119.99914 * 359.97438 * 13 11 9 43 43 H 1.08003 * 126.05987 * 359.94332 * 15 14 13 44 44 H 1.08002 * 126.07013 * 180.26487 * 16 15 14 45 45 H 1.09002 * 109.47391 * 4.71597 * 18 17 16 46 46 H 1.09001 * 109.46813 * 244.71653 * 18 17 16 47 47 H 0.97002 * 119.99739 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.6604 1.8441 2.4657 6 6 4.0173 2.0762 3.1713 7 6 4.9331 1.0796 2.4235 8 1 4.9851 0.1326 2.9606 9 7 6.2739 1.6447 2.2521 10 6 6.4484 2.9138 1.5411 11 6 7.3466 0.9972 2.7484 12 8 7.2017 -0.0557 3.3388 13 7 8.5799 1.5173 2.5912 14 6 9.6958 0.8441 3.1079 15 6 9.6737 -0.3732 3.8072 16 6 10.9484 -0.6899 4.1293 17 7 11.7493 0.2910 3.6624 18 6 13.2070 0.3488 3.7964 19 6 13.8312 0.4970 2.4328 20 1 13.2048 0.5440 1.5543 21 6 15.2021 0.5738 2.3069 22 7 15.7468 0.7037 1.1169 23 14 16.2855 0.4932 3.8264 24 1 16.6395 -0.9213 4.1075 25 1 17.5253 1.2765 3.5925 26 1 15.5533 1.0604 4.9872 27 7 10.9434 1.2414 3.0225 28 6 4.2626 0.8907 1.0806 29 8 4.7924 0.4104 0.1011 30 1 -0.5400 0.9353 0.0004 31 1 -0.5401 -0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1315 0.0896 34 1 2.6213 1.4025 -0.9314 35 1 2.1118 2.7824 2.3832 36 1 2.0709 1.1101 3.0151 37 1 3.9554 1.8293 4.2312 38 1 4.3594 3.1014 3.0305 39 1 6.5936 2.7181 0.4789 40 1 5.5616 3.5323 1.6789 41 1 7.3200 3.4351 1.9370 42 1 8.6956 2.3576 2.1204 43 1 8.7949 -0.9553 4.0427 44 1 11.2684 -1.5701 4.6671 45 1 13.5657 -0.5690 4.2624 46 1 13.4813 1.2023 4.4164 47 1 16.7113 0.7573 1.0283 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281397970.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:11 Heat of formation + Delta-G solvation = 49.190072 kcal Electronic energy + Delta-G solvation = -29857.756850 eV Core-core repulsion = 25657.502768 eV Total energy + Delta-G solvation = -4200.254082 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.43778 -41.85702 -40.67753 -37.68500 -37.04974 -36.32349 -35.42489 -34.97139 -33.09997 -31.78176 -30.95457 -29.07305 -28.75539 -27.62118 -26.93598 -24.68358 -23.45500 -22.48175 -21.96545 -21.29237 -20.72685 -20.17370 -19.39448 -19.10367 -18.25064 -17.88326 -17.50651 -17.22627 -16.93261 -16.64545 -16.23606 -16.15898 -15.57733 -15.42361 -15.05572 -14.85242 -14.73260 -14.49772 -14.43176 -14.31282 -14.01894 -13.90396 -13.82400 -13.48538 -13.27927 -13.10758 -12.97924 -12.79469 -12.52531 -12.36295 -12.32222 -11.98060 -11.82936 -11.65231 -11.49801 -11.25234 -11.15416 -10.86473 -10.44738 -9.90970 -9.79832 -9.70392 -9.05139 -8.36898 -6.47474 0.83681 1.03000 1.16430 1.36848 1.39650 1.47859 1.51828 1.62770 1.95597 2.17450 2.29775 2.33259 2.74790 2.95688 3.27726 3.51083 3.85735 3.89432 3.99248 3.99602 4.06091 4.10985 4.19531 4.42123 4.43839 4.48552 4.60541 4.67502 4.70328 4.72871 4.75056 4.84864 4.92484 4.99766 5.00637 5.03964 5.08944 5.24765 5.33908 5.45450 5.59859 5.65738 5.77477 5.88554 6.01445 6.01615 6.40822 6.48404 6.59356 7.02175 7.05630 7.15552 7.25851 8.80410 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027503 B = 0.001871 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.815630 B =14958.960272 C =15200.151977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.199 4.199 3 C 0.152 3.848 4 N -0.607 5.607 5 C 0.104 3.896 6 C -0.129 4.129 7 C 0.122 3.878 8 H 0.120 0.880 9 N -0.604 5.604 10 C 0.065 3.935 11 C 0.717 3.283 12 O -0.595 6.595 13 N -0.636 5.636 14 C 0.282 3.718 15 C -0.293 4.293 16 C 0.063 3.937 17 N -0.344 5.344 18 C 0.240 3.760 19 C -0.549 4.549 20 H 0.024 0.976 21 C 0.013 3.987 22 N -0.943 5.943 23 Si 0.958 3.042 24 H -0.254 1.254 25 H -0.281 1.281 26 H -0.237 1.237 27 N -0.348 5.348 28 C 0.499 3.501 29 O -0.571 6.571 30 H 0.123 0.877 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.049 0.951 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.418 0.582 43 H 0.167 0.833 44 H 0.212 0.788 45 H 0.083 0.917 46 H 0.048 0.952 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.959 6.399 7.286 35.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.218 4.218 3 C 0.032 3.968 4 N -0.340 5.340 5 C -0.018 4.018 6 C -0.168 4.168 7 C 0.014 3.986 8 H 0.138 0.862 9 N -0.340 5.340 10 C -0.077 4.077 11 C 0.418 3.582 12 O -0.472 6.472 13 N -0.288 5.288 14 C 0.026 3.974 15 C -0.325 4.325 16 C -0.085 4.085 17 N -0.126 5.126 18 C 0.120 3.880 19 C -0.587 4.587 20 H 0.042 0.958 21 C -0.186 4.186 22 N -0.582 5.582 23 Si 0.779 3.221 24 H -0.178 1.178 25 H -0.206 1.206 26 H -0.160 1.160 27 N -0.179 5.179 28 C 0.285 3.715 29 O -0.449 6.449 30 H 0.141 0.859 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.141 0.859 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.108 0.892 37 H 0.135 0.865 38 H 0.126 0.874 39 H 0.068 0.932 40 H 0.131 0.869 41 H 0.105 0.895 42 H 0.257 0.743 43 H 0.184 0.816 44 H 0.229 0.771 45 H 0.100 0.900 46 H 0.065 0.935 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -32.801 6.365 6.609 34.060 hybrid contribution 0.615 -0.592 -0.542 1.011 sum -32.185 5.773 6.066 33.257 Atomic orbital electron populations 1.24090 0.94762 1.03520 0.96694 1.23200 0.96919 0.98298 1.03391 1.20627 0.91550 0.96590 0.88075 1.48349 1.11126 1.60994 1.13501 1.22457 0.97030 1.01966 0.80309 1.23144 0.92209 0.99983 1.01430 1.21775 0.80969 1.01453 0.94374 0.86194 1.46620 1.03987 1.24358 1.59048 1.22087 1.05297 0.83932 0.96370 1.15627 0.80068 0.82891 0.79626 1.90805 1.84554 1.23620 1.48264 1.41514 1.02215 1.26310 1.58790 1.19131 0.86554 0.93880 0.97796 1.21720 0.98238 0.99797 1.12697 1.23238 0.90011 0.95413 0.99861 1.48503 1.07449 1.15611 1.41028 1.19895 0.71282 0.99856 0.96946 1.21253 0.92606 1.52560 0.92247 0.95799 1.25963 0.99133 0.93194 1.00294 1.70062 1.12257 1.50256 1.25631 0.85578 0.77951 0.79872 0.78726 1.17778 1.20607 1.16047 1.77299 0.99827 1.17341 1.23426 1.21436 0.83266 0.76891 0.89888 1.90727 1.69660 1.45996 1.38563 0.85850 0.87818 0.90061 0.85884 0.91178 0.86288 0.89206 0.86472 0.87387 0.93217 0.86857 0.89485 0.74319 0.81559 0.77105 0.89960 0.93452 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 14.32 67.78 0.97 -0.16 16 2 C -0.20 -2.51 9.85 25.64 0.25 -2.26 16 3 C 0.15 1.70 6.37 85.63 0.55 2.25 16 4 N -0.61 -8.01 2.92 -821.92 -2.40 -10.41 16 5 C 0.10 0.47 7.35 86.90 0.64 1.11 16 6 C -0.13 -0.93 6.72 31.72 0.21 -0.72 16 7 C 0.12 2.35 3.33 44.98 0.15 2.50 16 8 H 0.12 2.81 6.97 -2.39 -0.02 2.79 16 9 N -0.60 -13.95 2.85 -840.65 -2.39 -16.35 16 10 C 0.06 1.04 9.45 127.77 1.21 2.24 16 11 C 0.72 23.05 8.25 179.06 1.48 24.53 16 12 O -0.59 -22.48 12.83 -3.98 -0.05 -22.53 16 13 N -0.64 -21.64 5.32 -321.24 -1.71 -23.35 16 14 C 0.28 11.94 8.11 133.31 1.08 13.03 16 15 C -0.29 -11.84 9.61 22.11 0.21 -11.62 16 16 C 0.06 2.41 11.44 83.52 0.96 3.37 16 17 N -0.34 -15.90 3.67 -351.84 -1.29 -17.19 16 18 C 0.24 11.32 5.33 85.63 0.46 11.78 16 19 C -0.55 -32.39 9.79 25.60 0.25 -32.14 16 20 H 0.02 1.65 8.06 -2.91 -0.02 1.63 16 21 C 0.01 0.74 5.47 84.66 0.46 1.20 16 22 N -0.94 -59.14 13.96 21.45 0.30 -58.84 16 23 Si 0.96 41.22 27.47 68.60 1.88 43.11 16 24 H -0.25 -10.15 7.11 99.48 0.71 -9.45 16 25 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 26 H -0.24 -9.15 6.54 99.48 0.65 -8.50 16 27 N -0.35 -16.82 12.42 -54.43 -0.68 -17.49 16 28 C 0.50 11.31 7.08 87.90 0.62 11.94 16 29 O -0.57 -19.40 17.59 -3.03 -0.05 -19.45 16 30 H 0.12 0.32 7.84 -2.91 -0.02 0.30 16 31 H 0.10 0.71 8.06 -2.91 -0.02 0.68 16 32 H 0.08 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.12 0.43 7.79 -2.39 -0.02 0.41 16 34 H 0.07 1.09 7.93 -2.39 -0.02 1.08 16 35 H 0.12 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.09 0.26 8.14 -2.38 -0.02 0.24 16 37 H 0.12 0.55 8.14 -2.38 -0.02 0.53 16 38 H 0.11 0.46 6.27 -2.39 -0.01 0.45 16 39 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.11 0.97 6.35 -2.39 -0.02 0.96 16 41 H 0.09 1.20 6.36 -2.39 -0.02 1.19 16 42 H 0.42 12.00 6.55 -92.70 -0.61 11.40 16 43 H 0.17 6.57 5.91 -2.91 -0.02 6.56 16 44 H 0.21 5.95 8.06 -2.91 -0.02 5.93 16 45 H 0.08 3.33 7.50 -2.39 -0.02 3.31 16 46 H 0.05 2.17 7.20 -2.39 -0.02 2.15 16 47 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -91.47 392.02 3.45 -88.02 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.34 Total: 27.44 kcal Atomic # 6 Polarization: 17.55 SS G_CDS: 9.50 Total: 27.05 kcal Atomic # 7 Polarization: -135.46 SS G_CDS: -8.17 Total: -143.63 kcal Atomic # 8 Polarization: -41.88 SS G_CDS: -0.10 Total: -41.99 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 1.88 Total: 43.11 kcal Total: -91.47 3.45 -88.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281397970.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.209 kcal (2) G-P(sol) polarization free energy of solvation -91.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds