Wall clock time and date at job start Wed Apr 1 2020 06:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35942 * 117.00182 * 2 1 4 4 C 1.38576 * 120.02403 * 359.97438 * 3 2 1 5 5 C 1.38806 * 119.89661 * 179.97438 * 4 3 2 6 6 N 1.39809 * 120.02716 * 179.97438 * 5 4 3 7 7 C 1.46957 * 111.00070 * 179.97438 * 6 5 4 8 8 C 1.53051 * 109.36250 * 183.18884 * 7 6 5 9 9 N 1.46956 * 109.36581 * 301.59618 * 8 7 6 10 10 C 1.46895 * 111.00059 * 183.19045 * 9 8 7 11 11 C 1.52994 * 109.47270 * 170.00062 * 10 9 8 12 12 H 1.09009 * 109.47154 * 54.99975 * 11 10 9 13 13 C 1.47200 * 109.47451 * 295.00037 * 11 10 9 14 14 N 9.94005 * 83.91003 * 333.91382 * 2 1 3 15 15 C 1.52996 * 109.47347 * 174.99819 * 11 10 9 16 16 C 1.50702 * 109.47159 * 185.00014 * 15 11 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 11 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 11 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.46956 * 110.87500 * 59.32176 * 9 8 7 25 25 C 1.46957 * 110.99990 * 303.80145 * 6 5 4 26 26 C 1.38912 * 119.94614 * 0.25698 * 5 4 3 27 27 C 1.38180 * 120.04956 * 359.49264 * 26 5 4 28 28 C 1.38345 * 120.09793 * 0.50716 * 27 26 5 29 29 F 1.35101 * 119.96840 * 179.72508 * 28 27 26 30 30 H 1.09003 * 109.47441 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46494 * 299.99767 * 1 2 3 32 32 H 1.08998 * 109.47646 * 59.99958 * 1 2 3 33 33 H 1.07993 * 120.05190 * 0.02562 * 4 3 2 34 34 H 1.08993 * 109.48947 * 63.22032 * 7 6 5 35 35 H 1.09004 * 109.50335 * 303.16695 * 7 6 5 36 36 H 1.09010 * 109.48409 * 181.62862 * 8 7 6 37 37 H 1.08998 * 109.50781 * 61.58095 * 8 7 6 38 38 H 1.08998 * 109.47324 * 50.00063 * 10 9 8 39 39 H 1.09002 * 109.47421 * 290.00240 * 10 9 8 40 40 H 1.09004 * 109.47066 * 65.00217 * 15 11 10 41 41 H 1.08994 * 109.47405 * 305.00047 * 15 11 10 42 42 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 43 43 H 1.09007 * 109.48937 * 60.65000 * 24 9 8 44 44 H 1.09002 * 109.48568 * 180.70808 * 24 9 8 45 45 H 1.09003 * 109.48520 * 296.77685 * 25 6 5 46 46 H 1.08996 * 109.48913 * 56.84363 * 25 6 5 47 47 H 1.08003 * 119.97558 * 179.74943 * 26 5 4 48 48 H 1.07994 * 119.95013 * 180.27776 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2920 2.3738 -0.0005 5 6 1.9250 3.6091 0.0000 6 7 1.1667 4.7837 -0.0011 7 6 2.0338 5.9703 0.0004 8 6 1.1689 7.2306 0.0794 9 7 0.2439 7.2592 -1.0621 10 6 -0.5528 8.4934 -1.0632 11 6 -1.3164 8.6063 -2.3842 12 1 -1.9103 7.7054 -2.5387 13 6 -0.3598 8.7593 -3.4924 14 7 0.3745 8.8771 -4.3462 15 6 -2.2407 9.8245 -2.3364 16 6 -3.0817 9.8662 -3.5863 17 1 -2.9686 9.1002 -4.3392 18 6 -4.0001 10.8789 -3.7658 19 7 -4.1382 11.8115 -2.8488 20 14 -5.0480 10.9263 -5.3114 21 1 -4.7027 9.7718 -6.1791 22 1 -6.4836 10.8530 -4.9386 23 1 -4.7911 12.1917 -6.0451 24 6 -0.6230 6.0726 -1.0635 25 6 0.2412 4.8121 -1.1422 26 6 3.3124 3.6774 -0.0043 27 6 4.0623 2.5168 0.0014 28 6 3.4335 1.2845 0.0009 29 9 4.1693 0.1514 0.0009 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 0.2135 2.3187 -0.0005 34 1 2.6235 5.9908 -0.9160 35 1 2.7010 5.9324 0.8615 36 1 1.8086 8.1128 0.0515 37 1 0.5996 7.2236 1.0089 38 1 0.1083 9.3527 -0.9511 39 1 -1.2611 8.4694 -0.2350 40 1 -1.6416 10.7328 -2.2712 41 1 -2.8900 9.7540 -1.4639 42 1 -4.7840 12.5242 -2.9752 43 1 -1.2129 6.0521 -0.1470 44 1 -1.2901 6.1107 -1.9247 45 1 0.8103 4.8192 -2.0719 46 1 -0.3983 3.9299 -1.1137 47 1 3.8054 4.6383 -0.0080 48 1 5.1409 2.5718 0.0026 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282882249.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:29 Heat of formation + Delta-G solvation = -13.501982 kcal Electronic energy + Delta-G solvation = -29855.711956 eV Core-core repulsion = 25632.819381 eV Total energy + Delta-G solvation = -4222.892575 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -48.92991 -40.91466 -39.59472 -38.03915 -36.52875 -35.04237 -33.60415 -31.97367 -31.57548 -30.50761 -29.84700 -27.98569 -27.03738 -25.59750 -24.32303 -22.99757 -22.34214 -21.96951 -21.61437 -20.05413 -18.80730 -17.35902 -17.19719 -16.88643 -16.64428 -16.44649 -16.34006 -15.32857 -15.27499 -15.11164 -15.05525 -14.78301 -14.76280 -14.46837 -14.45485 -14.34163 -13.41214 -13.13362 -13.03615 -12.88951 -12.58697 -12.44363 -12.36710 -12.04700 -11.99870 -11.76543 -11.69659 -11.51149 -11.42313 -11.29958 -11.13937 -11.11359 -11.09511 -10.69912 -10.54298 -10.19241 -9.86384 -9.59428 -9.25624 -8.88834 -8.50597 -8.33882 -8.03480 -6.14120 -4.17321 0.80548 0.92010 2.76414 3.08889 3.25074 3.33678 3.37828 3.45010 3.67956 3.77992 3.85979 4.00698 4.32998 4.37352 4.52178 4.64602 4.72790 4.75427 4.78149 4.78682 4.89241 4.99928 5.08402 5.10036 5.12231 5.19526 5.21195 5.24244 5.32883 5.46429 5.53003 5.58367 5.63872 5.68609 5.74604 5.80031 5.86621 5.88690 5.96541 6.16859 6.28655 6.42893 6.57895 6.73972 6.96187 7.02014 7.04815 7.37338 7.47346 7.81116 8.18210 8.53521 8.87582 9.48464 10.96761 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018683 B = 0.002021 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.345753 B =13848.281835 C =14487.440264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.121 3.879 4 C -0.206 4.206 5 C 0.150 3.850 6 N -0.489 5.489 7 C 0.052 3.948 8 C 0.056 3.944 9 N -0.543 5.543 10 C 0.064 3.936 11 C 0.010 3.990 12 H 0.099 0.901 13 C 0.256 3.744 14 N -0.478 5.478 15 C 0.031 3.969 16 C -0.526 4.526 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.283 1.283 24 C 0.050 3.950 25 C 0.062 3.938 26 C -0.181 4.181 27 C -0.087 4.087 28 C 0.036 3.964 29 F -0.137 7.137 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.141 0.859 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.026 0.974 41 H 0.037 0.963 42 H 0.262 0.738 43 H 0.048 0.952 44 H 0.093 0.907 45 H 0.056 0.944 46 H 0.084 0.916 47 H 0.140 0.860 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.071 -19.848 11.559 25.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.074 3.926 4 C -0.227 4.227 5 C 0.051 3.949 6 N -0.203 5.203 7 C -0.075 4.075 8 C -0.072 4.072 9 N -0.268 5.268 10 C -0.065 4.065 11 C -0.012 4.012 12 H 0.117 0.883 13 C -0.061 4.061 14 N -0.155 5.155 15 C -0.008 4.008 16 C -0.564 4.564 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.209 1.209 24 C -0.078 4.078 25 C -0.064 4.064 26 C -0.202 4.202 27 C -0.107 4.107 28 C 0.015 3.985 29 F -0.116 7.116 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.159 0.841 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.045 0.955 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.111 0.889 45 H 0.074 0.926 46 H 0.102 0.898 47 H 0.158 0.842 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 12.116 -19.668 10.294 25.290 hybrid contribution -1.165 0.072 -0.341 1.216 sum 10.951 -19.595 9.953 24.555 Atomic orbital electron populations 1.23146 0.77679 1.04334 1.01796 1.86139 1.21945 1.25706 1.88476 1.18787 0.90640 0.85286 0.97856 1.20691 1.00414 0.89970 1.11662 1.18746 0.91197 0.90143 0.94854 1.59233 1.18777 1.00847 1.41482 1.22413 0.94740 0.88248 1.02053 1.22157 0.95419 0.97127 0.92500 1.62205 1.19832 1.02553 1.42253 1.22229 0.96062 0.91388 0.96796 1.19249 0.91845 1.04067 0.86061 0.88310 1.28681 0.92382 0.91499 0.93543 1.80828 1.12491 1.10550 1.11639 1.19177 0.92965 0.90090 0.98523 1.21162 1.20304 1.10665 1.04254 0.92480 1.24957 0.97104 0.95418 0.96519 1.69947 1.35604 1.13448 1.33962 0.86540 0.80110 0.78161 0.83298 1.19682 1.20846 1.20938 1.22280 0.94596 0.88647 1.02314 1.22350 0.94565 0.98876 0.90567 1.21129 0.92573 0.98885 1.07588 1.20850 1.00831 0.89886 0.99085 1.16869 0.85914 0.82988 1.12733 1.91479 1.76477 1.48971 1.94669 0.87895 0.92220 0.92253 0.84107 0.92331 0.89474 0.89657 0.93590 0.90036 0.92571 0.95547 0.94447 0.92824 0.93330 0.88912 0.92560 0.89778 0.84248 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.15 10.36 -19.56 -0.20 -3.35 16 3 C 0.12 1.27 6.69 -39.20 -0.26 1.01 16 4 C -0.21 -1.92 8.18 -39.25 -0.32 -2.24 16 5 C 0.15 1.44 5.64 -83.76 -0.47 0.96 16 6 N -0.49 -4.69 4.76 -170.95 -0.81 -5.50 16 7 C 0.05 0.47 4.29 -3.77 -0.02 0.45 16 8 C 0.06 0.56 5.61 -3.77 -0.02 0.54 16 9 N -0.54 -6.56 4.41 -234.47 -1.03 -7.59 16 10 C 0.06 0.87 4.32 -3.83 -0.02 0.85 16 11 C 0.01 0.17 2.14 -93.41 -0.20 -0.03 16 12 H 0.10 1.60 6.28 -51.92 -0.33 1.27 16 13 C 0.26 5.14 13.66 -20.88 -0.29 4.85 16 14 N -0.48 -10.53 18.51 42.01 0.78 -9.75 16 15 C 0.03 0.69 4.42 -27.88 -0.12 0.57 16 16 C -0.53 -13.63 8.60 -34.44 -0.30 -13.92 16 17 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -25.03 13.29 55.43 0.74 -24.29 16 20 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.05 0.54 5.41 -3.77 -0.02 0.51 16 25 C 0.06 0.60 5.38 -3.77 -0.02 0.58 16 26 C -0.18 -1.59 8.82 -39.35 -0.35 -1.94 16 27 C -0.09 -0.77 10.01 -39.56 -0.40 -1.17 16 28 C 0.04 0.38 7.31 -39.29 -0.29 0.10 16 29 F -0.14 -1.65 17.11 2.25 0.04 -1.61 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 32 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 33 H 0.14 1.09 5.42 -52.49 -0.28 0.81 16 34 H 0.06 0.57 7.57 -51.93 -0.39 0.18 16 35 H 0.09 0.65 7.18 -51.93 -0.37 0.28 16 36 H 0.09 0.80 8.07 -51.92 -0.42 0.38 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 1.12 8.02 -51.93 -0.42 0.71 16 39 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.09 1.03 6.25 -51.93 -0.32 0.71 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.08 0.69 6.82 -51.93 -0.35 0.33 16 47 H 0.14 1.01 5.80 -52.48 -0.30 0.70 16 48 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 392.71 15.07 5.92 5.92 Total: -1.00 -31.39 392.71 -8.70 -40.08 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -6.91 Total: -3.67 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -2.19 Total: -6.15 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -0.33 Total: -47.13 kcal Atomic # 8 Polarization: -3.15 SS G_CDS: -0.20 Total: -3.35 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.39 -8.70 -40.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282882249.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.580 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds