Wall clock time and date at job start Wed Apr 1 2020 06:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35942 * 117.00182 * 2 1 4 4 C 1.38576 * 120.02403 * 359.97438 * 3 2 1 5 5 C 1.38806 * 119.89661 * 179.97438 * 4 3 2 6 6 N 1.39809 * 120.02716 * 179.97438 * 5 4 3 7 7 C 1.46957 * 111.00070 * 179.97438 * 6 5 4 8 8 C 1.53051 * 109.36250 * 183.18884 * 7 6 5 9 9 N 1.46956 * 109.36581 * 301.59618 * 8 7 6 10 10 C 1.46895 * 111.00059 * 183.19045 * 9 8 7 11 11 C 1.52994 * 109.47270 * 170.00062 * 10 9 8 12 12 H 1.09009 * 109.47154 * 54.99975 * 11 10 9 13 13 C 1.47200 * 109.47451 * 295.00037 * 11 10 9 14 14 N 9.94005 * 83.91003 * 333.91382 * 2 1 3 15 15 C 1.52996 * 109.47347 * 174.99819 * 11 10 9 16 16 C 1.50702 * 109.47159 * 185.00014 * 15 11 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 11 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 11 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.46956 * 110.87500 * 59.32176 * 9 8 7 25 25 C 1.46957 * 110.99990 * 303.80145 * 6 5 4 26 26 C 1.38912 * 119.94614 * 0.25698 * 5 4 3 27 27 C 1.38180 * 120.04956 * 359.49264 * 26 5 4 28 28 C 1.38345 * 120.09793 * 0.50716 * 27 26 5 29 29 F 1.35101 * 119.96840 * 179.72508 * 28 27 26 30 30 H 1.09003 * 109.47441 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46494 * 299.99767 * 1 2 3 32 32 H 1.08998 * 109.47646 * 59.99958 * 1 2 3 33 33 H 1.07993 * 120.05190 * 0.02562 * 4 3 2 34 34 H 1.08993 * 109.48947 * 63.22032 * 7 6 5 35 35 H 1.09004 * 109.50335 * 303.16695 * 7 6 5 36 36 H 1.09010 * 109.48409 * 181.62862 * 8 7 6 37 37 H 1.08998 * 109.50781 * 61.58095 * 8 7 6 38 38 H 1.08998 * 109.47324 * 50.00063 * 10 9 8 39 39 H 1.09002 * 109.47421 * 290.00240 * 10 9 8 40 40 H 1.09004 * 109.47066 * 65.00217 * 15 11 10 41 41 H 1.08994 * 109.47405 * 305.00047 * 15 11 10 42 42 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 43 43 H 1.09007 * 109.48937 * 60.65000 * 24 9 8 44 44 H 1.09002 * 109.48568 * 180.70808 * 24 9 8 45 45 H 1.09003 * 109.48520 * 296.77685 * 25 6 5 46 46 H 1.08996 * 109.48913 * 56.84363 * 25 6 5 47 47 H 1.08003 * 119.97558 * 179.74943 * 26 5 4 48 48 H 1.07994 * 119.95013 * 180.27776 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2920 2.3738 -0.0005 5 6 1.9250 3.6091 0.0000 6 7 1.1667 4.7837 -0.0011 7 6 2.0338 5.9703 0.0004 8 6 1.1689 7.2306 0.0794 9 7 0.2439 7.2592 -1.0621 10 6 -0.5528 8.4934 -1.0632 11 6 -1.3164 8.6063 -2.3842 12 1 -1.9103 7.7054 -2.5387 13 6 -0.3598 8.7593 -3.4924 14 7 0.3745 8.8771 -4.3462 15 6 -2.2407 9.8245 -2.3364 16 6 -3.0817 9.8662 -3.5863 17 1 -2.9686 9.1002 -4.3392 18 6 -4.0001 10.8789 -3.7658 19 7 -4.1382 11.8115 -2.8488 20 14 -5.0480 10.9263 -5.3114 21 1 -4.7027 9.7718 -6.1791 22 1 -6.4836 10.8530 -4.9386 23 1 -4.7911 12.1917 -6.0451 24 6 -0.6230 6.0726 -1.0635 25 6 0.2412 4.8121 -1.1422 26 6 3.3124 3.6774 -0.0043 27 6 4.0623 2.5168 0.0014 28 6 3.4335 1.2845 0.0009 29 9 4.1693 0.1514 0.0009 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 0.2135 2.3187 -0.0005 34 1 2.6235 5.9908 -0.9160 35 1 2.7010 5.9324 0.8615 36 1 1.8086 8.1128 0.0515 37 1 0.5996 7.2236 1.0089 38 1 0.1083 9.3527 -0.9511 39 1 -1.2611 8.4694 -0.2350 40 1 -1.6416 10.7328 -2.2712 41 1 -2.8900 9.7540 -1.4639 42 1 -4.7840 12.5242 -2.9752 43 1 -1.2129 6.0521 -0.1470 44 1 -1.2901 6.1107 -1.9247 45 1 0.8103 4.8192 -2.0719 46 1 -0.3983 3.9299 -1.1137 47 1 3.8054 4.6383 -0.0080 48 1 5.1409 2.5718 0.0026 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282882249.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:28 Heat of formation + Delta-G solvation = -32.487726 kcal Electronic energy + Delta-G solvation = -29856.535240 eV Core-core repulsion = 25632.819381 eV Total energy + Delta-G solvation = -4223.715859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.75992 -41.63321 -40.35906 -39.00603 -37.74566 -36.18045 -35.33767 -33.47867 -32.41051 -31.25253 -30.70341 -28.97325 -27.98754 -26.80986 -25.10124 -24.25943 -23.46616 -22.97623 -22.64111 -20.84413 -19.51722 -18.54402 -18.22027 -18.06739 -17.87008 -17.33698 -17.14734 -16.64389 -16.07527 -16.01982 -15.91245 -15.81293 -15.69047 -15.48942 -15.38571 -15.10289 -14.65626 -14.44163 -14.26673 -13.83759 -13.78637 -13.62225 -13.34016 -13.31801 -13.05214 -12.95565 -12.66084 -12.65400 -12.51167 -12.48936 -12.32397 -12.23835 -12.15744 -12.00639 -11.92792 -11.58941 -11.33961 -11.06391 -10.59256 -10.54694 -9.57872 -9.24672 -8.77536 -8.19149 -6.26826 0.08301 0.22362 1.39112 1.42831 1.52505 2.10503 2.16953 2.17920 2.37620 2.41749 2.74069 2.89810 3.16729 3.29088 3.37166 3.66317 3.80572 3.95520 3.99565 4.07802 4.15001 4.24359 4.31547 4.36918 4.36957 4.43929 4.46559 4.48346 4.54339 4.61328 4.73001 4.74016 4.75568 4.81394 4.94295 4.95126 5.01014 5.01941 5.08762 5.11511 5.17173 5.48167 5.49224 5.63037 5.80088 5.84543 5.97666 6.10590 6.16483 6.22774 6.30879 6.84641 6.95326 7.41801 8.91830 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018683 B = 0.002021 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.345753 B =13848.281835 C =14487.440264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.112 3.888 4 C -0.206 4.206 5 C 0.142 3.858 6 N -0.489 5.489 7 C 0.054 3.946 8 C 0.057 3.943 9 N -0.556 5.556 10 C 0.075 3.925 11 C 0.021 3.979 12 H 0.116 0.884 13 C 0.267 3.733 14 N -0.514 5.514 15 C 0.038 3.962 16 C -0.536 4.536 17 H 0.053 0.947 18 C 0.011 3.989 19 N -0.923 5.923 20 Si 0.946 3.054 21 H -0.270 1.270 22 H -0.273 1.273 23 H -0.286 1.286 24 C 0.050 3.950 25 C 0.066 3.934 26 C -0.181 4.181 27 C -0.083 4.083 28 C 0.008 3.992 29 F -0.150 7.150 30 H 0.120 0.880 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.155 0.845 34 H 0.051 0.949 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.001 0.999 41 H 0.036 0.964 42 H 0.264 0.736 43 H 0.056 0.944 44 H 0.087 0.913 45 H 0.041 0.959 46 H 0.100 0.900 47 H 0.156 0.844 48 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.870 -20.623 12.172 26.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.065 3.935 4 C -0.227 4.227 5 C 0.043 3.957 6 N -0.203 5.203 7 C -0.072 4.072 8 C -0.070 4.070 9 N -0.281 5.281 10 C -0.054 4.054 11 C -0.001 4.001 12 H 0.134 0.866 13 C -0.049 4.049 14 N -0.192 5.192 15 C -0.001 4.001 16 C -0.574 4.574 17 H 0.071 0.929 18 C -0.188 4.188 19 N -0.563 5.563 20 Si 0.773 3.227 21 H -0.194 1.194 22 H -0.198 1.198 23 H -0.213 1.213 24 C -0.078 4.078 25 C -0.059 4.059 26 C -0.202 4.202 27 C -0.102 4.102 28 C -0.012 4.012 29 F -0.129 7.129 30 H 0.138 0.862 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.173 0.827 34 H 0.070 0.930 35 H 0.124 0.876 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.020 0.980 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.060 0.940 46 H 0.118 0.882 47 H 0.174 0.826 48 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 11.916 -20.461 10.912 26.071 hybrid contribution -1.105 0.292 -0.521 1.256 sum 10.810 -20.169 10.391 25.132 Atomic orbital electron populations 1.23414 0.75785 1.05860 1.02614 1.86113 1.24023 1.25892 1.88501 1.18947 0.90757 0.85802 0.98027 1.20805 1.01078 0.89527 1.11252 1.18890 0.91643 0.90191 0.94992 1.59258 1.18893 1.00987 1.41210 1.22439 0.94629 0.87595 1.02568 1.22205 0.95147 0.97908 0.91772 1.62147 1.20055 1.02156 1.43744 1.22023 0.96236 0.92438 0.94679 1.19199 0.91199 1.02414 0.87284 0.86599 1.29174 0.91969 0.90468 0.93292 1.80828 1.13899 1.11619 1.12838 1.18994 0.92987 0.91173 0.96970 1.21569 1.20379 1.10164 1.05304 0.92858 1.25695 0.98529 0.95436 0.99105 1.70034 1.36531 1.14143 1.35571 0.85673 0.79085 0.77831 0.80153 1.19393 1.19841 1.21250 1.22301 0.94624 0.88484 1.02411 1.22308 0.94558 0.99042 0.90033 1.21344 0.92417 0.99512 1.06952 1.21082 1.01936 0.89187 0.98007 1.17258 0.86417 0.83264 1.14285 1.91437 1.76789 1.49754 1.94936 0.86162 0.91323 0.91416 0.82739 0.93027 0.87582 0.89107 0.93034 0.90223 0.91123 0.98014 0.94608 0.92750 0.92584 0.89437 0.94047 0.88167 0.82621 0.82046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.56 10.36 -92.90 -0.96 -7.52 16 3 C 0.11 2.26 6.69 22.51 0.15 2.41 16 4 C -0.21 -3.51 8.18 22.49 0.18 -3.33 16 5 C 0.14 2.45 5.64 38.17 0.22 2.66 16 6 N -0.49 -8.23 4.76 -694.77 -3.30 -11.54 16 7 C 0.05 0.85 4.29 86.31 0.37 1.22 16 8 C 0.06 1.00 5.61 86.31 0.48 1.49 16 9 N -0.56 -12.30 4.41 -895.74 -3.95 -16.25 16 10 C 0.07 1.92 4.32 86.30 0.37 2.29 16 11 C 0.02 0.70 2.14 -12.60 -0.03 0.67 16 12 H 0.12 3.55 6.28 -2.38 -0.01 3.53 16 13 C 0.27 10.54 13.66 89.49 1.22 11.77 16 14 N -0.51 -22.47 18.51 19.96 0.37 -22.10 16 15 C 0.04 1.66 4.42 29.85 0.13 1.79 16 16 C -0.54 -27.61 8.60 25.60 0.22 -27.39 16 17 H 0.05 2.73 7.59 -2.91 -0.02 2.71 16 18 C 0.01 0.61 5.46 84.66 0.46 1.07 16 19 N -0.92 -51.94 13.29 21.45 0.28 -51.66 16 20 Si 0.95 42.65 29.54 68.60 2.03 44.68 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 24 C 0.05 0.96 5.41 86.31 0.47 1.43 16 25 C 0.07 1.15 5.38 86.31 0.46 1.61 16 26 C -0.18 -2.84 8.82 22.42 0.20 -2.64 16 27 C -0.08 -1.37 10.01 22.28 0.22 -1.14 16 28 C 0.01 0.18 7.31 22.46 0.16 0.34 16 29 F -0.15 -3.64 17.11 44.97 0.77 -2.87 16 30 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 32 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 33 H 0.16 2.08 5.42 -2.91 -0.02 2.06 16 34 H 0.05 0.89 7.57 -2.39 -0.02 0.88 16 35 H 0.11 1.26 7.18 -2.39 -0.02 1.24 16 36 H 0.09 1.49 8.07 -2.38 -0.02 1.47 16 37 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.08 2.08 8.02 -2.39 -0.02 2.06 16 39 H 0.07 1.63 8.12 -2.39 -0.02 1.61 16 40 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 42 H 0.26 14.08 8.31 -92.70 -0.77 13.31 16 43 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 44 H 0.09 1.77 6.25 -2.39 -0.01 1.75 16 45 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.10 1.40 6.82 -2.39 -0.02 1.38 16 47 H 0.16 1.86 5.80 -2.91 -0.02 1.84 16 48 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -66.94 392.71 2.63 -64.32 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 0.98 Total: 7.40 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 6.42 Total: -4.46 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -6.60 Total: -101.55 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.96 Total: -7.52 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.77 Total: -2.87 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -66.94 2.63 -64.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282882249.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.828 kcal (2) G-P(sol) polarization free energy of solvation -66.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds