Wall clock time and date at job start Wed Apr 1 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00343 * 2 1 4 4 C 1.46906 * 110.99830 * 123.95824 * 2 1 3 5 5 C 1.52990 * 109.47303 * 66.04422 * 4 2 1 6 6 C 1.53005 * 109.47342 * 179.97438 * 5 4 2 7 7 N 1.46495 * 109.47225 * 179.97438 * 6 5 4 8 8 C 1.46503 * 120.00118 * 270.00398 * 7 6 5 9 9 C 1.50706 * 109.46731 * 275.80715 * 8 7 6 10 10 H 1.07992 * 120.00070 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99677 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99710 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00062 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.47053 * 90.00025 * 13 11 9 15 15 H 1.48497 * 109.46998 * 209.99787 * 13 11 9 16 16 H 1.48500 * 109.47049 * 330.00014 * 13 11 9 17 17 C 1.34776 * 119.99838 * 90.00056 * 7 6 5 18 18 O 1.21583 * 120.00060 * 4.96254 * 17 7 6 19 19 C 1.47637 * 119.99964 * 184.95323 * 17 7 6 20 20 C 1.39669 * 120.49782 * 311.94730 * 19 17 7 21 21 N 1.31559 * 120.99386 * 180.02562 * 20 19 17 22 22 C 1.32522 * 121.81415 * 0.02562 * 21 20 19 23 23 N 1.38552 * 132.84926 * 179.97438 * 22 21 20 24 24 H 0.97001 * 125.67058 * 0.02562 * 23 22 21 25 25 C 1.34561 * 108.65987 * 179.97438 * 23 22 21 26 26 O 1.21670 * 125.14650 * 179.97438 * 25 23 22 27 27 N 1.34670 * 109.70922 * 0.02562 * 25 23 22 28 28 H 0.97003 * 125.95583 * 179.97438 * 27 25 23 29 29 C 1.39255 * 108.10195 * 359.76370 * 27 25 23 30 30 C 1.38338 * 133.56383 * 179.55398 * 29 27 25 31 31 H 1.09002 * 109.47100 * 296.04767 * 1 2 3 32 32 H 1.09000 * 109.46913 * 56.04262 * 1 2 3 33 33 H 1.08993 * 109.47141 * 176.04586 * 1 2 3 34 34 H 1.08993 * 109.47143 * 183.95170 * 3 2 1 35 35 H 1.08999 * 109.47072 * 303.95717 * 3 2 1 36 36 H 1.08999 * 109.46850 * 63.95552 * 3 2 1 37 37 H 1.09000 * 109.46677 * 306.03826 * 4 2 1 38 38 H 1.09003 * 109.46849 * 186.04355 * 4 2 1 39 39 H 1.09000 * 109.47741 * 60.00055 * 5 4 2 40 40 H 1.09003 * 109.47113 * 299.99771 * 5 4 2 41 41 H 1.09006 * 109.46547 * 59.99908 * 6 5 4 42 42 H 1.08994 * 109.47171 * 300.00034 * 6 5 4 43 43 H 1.08995 * 109.47472 * 35.80761 * 8 7 6 44 44 H 1.09005 * 109.46812 * 155.81174 * 8 7 6 45 45 H 0.97004 * 119.99580 * 180.02562 * 12 11 9 46 46 H 1.08000 * 119.50231 * 0.04305 * 20 19 17 47 47 H 1.08000 * 120.93769 * 0.67783 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 1.6314 -2.2426 0.9703 6 6 2.1802 -3.0406 2.1548 7 7 1.8311 -4.4544 1.9949 8 6 0.5746 -4.9657 2.5479 9 6 0.7690 -5.3095 4.0023 10 1 1.7320 -5.1614 4.4681 11 6 -0.2827 -5.8130 4.7382 12 7 -0.1132 -6.1125 6.0075 13 14 -1.9482 -6.0697 3.9322 14 1 -2.0162 -7.4391 3.3618 15 1 -3.0199 -5.9022 4.9464 16 1 -2.1325 -5.0720 2.8478 17 6 2.6660 -5.2846 1.3389 18 8 3.7486 -4.8825 0.9588 19 6 2.2659 -6.6823 1.0821 20 6 1.7381 -7.4686 2.1087 21 7 1.3789 -8.7153 1.8909 22 6 1.5004 -9.2790 0.6977 23 7 1.2030 -10.5447 0.2189 24 1 0.8259 -11.2719 0.7384 25 6 1.5233 -10.5972 -1.0870 26 8 1.3850 -11.5708 -1.8035 27 7 2.0210 -9.4094 -1.4807 28 1 2.3263 -9.1878 -2.3744 29 6 2.0164 -8.5530 -0.3826 30 6 2.4113 -7.2404 -0.1956 31 1 -0.3633 0.4513 0.9233 32 1 -0.3633 0.5740 -0.8524 33 1 -0.3633 -1.0251 -0.0709 34 1 3.0828 1.3432 -0.0708 35 1 1.5899 1.9163 -0.8524 36 1 1.7045 1.8723 0.9233 37 1 1.5611 -0.3873 2.0628 38 1 3.0797 -0.6612 1.1756 39 1 2.0657 -2.6215 0.0451 40 1 0.5471 -2.3475 0.9323 41 1 1.7462 -2.6620 3.0802 42 1 3.2645 -2.9358 2.1924 43 1 -0.1999 -4.2044 2.4549 44 1 0.2736 -5.8590 2.0005 45 1 -0.8530 -6.4670 6.5251 46 1 1.6228 -7.0467 3.0962 47 1 2.8154 -6.6605 -1.0122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289552969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:14 Heat of formation + Delta-G solvation = 14.926126 kcal Electronic energy + Delta-G solvation = -30761.947764 eV Core-core repulsion = 26560.207886 eV Total energy + Delta-G solvation = -4201.739878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.66471 -39.95643 -38.52087 -37.65346 -36.28662 -35.50462 -34.44980 -33.05658 -32.04679 -31.40372 -29.31280 -28.19379 -27.67975 -26.21095 -24.05820 -23.59352 -22.80724 -22.66715 -22.26117 -20.78471 -19.47383 -18.60539 -17.83721 -17.22314 -16.62965 -16.53924 -16.38186 -16.27333 -15.71971 -15.55126 -15.10701 -14.98166 -14.81874 -14.39929 -14.09503 -13.94442 -13.62348 -13.54447 -13.12905 -12.95182 -12.58239 -12.49936 -12.28251 -11.94196 -11.85905 -11.75777 -11.71853 -11.41807 -11.31574 -11.07529 -10.98131 -10.90625 -10.72958 -10.43292 -10.28203 -9.85071 -9.77780 -9.29455 -9.15656 -8.85396 -8.44107 -8.03603 -7.94674 -6.38093 -4.42619 0.87600 1.19771 2.23967 2.70978 2.91903 3.10765 3.13208 3.17276 3.21929 3.52223 3.88359 3.95024 4.14963 4.28604 4.65798 4.88499 4.91473 4.98103 5.02140 5.05616 5.17916 5.24878 5.29703 5.40636 5.46238 5.54656 5.55843 5.67479 5.71674 5.76967 5.79499 5.88781 6.04503 6.06125 6.23057 6.34777 6.37527 6.46532 6.54763 6.62363 6.66591 6.94084 6.96120 7.04278 7.12457 7.27155 7.87309 7.91391 8.07579 8.22009 8.59851 8.69945 9.19993 10.72608 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008604 B = 0.003634 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3253.549148 B = 7702.543082 C = 9788.649212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.058 3.942 5 C -0.130 4.130 6 C 0.122 3.878 7 N -0.579 5.579 8 C 0.200 3.800 9 C -0.556 4.556 10 H 0.086 0.914 11 C 0.089 3.911 12 N -0.876 5.876 13 Si 0.862 3.138 14 H -0.267 1.267 15 H -0.281 1.281 16 H -0.264 1.264 17 C 0.570 3.430 18 O -0.554 6.554 19 C -0.169 4.169 20 C 0.169 3.831 21 N -0.473 5.473 22 C 0.309 3.691 23 N -0.625 5.625 24 H 0.439 0.561 25 C 0.693 3.307 26 O -0.556 6.556 27 N -0.635 5.635 28 H 0.436 0.564 29 C 0.020 3.980 30 C -0.016 4.016 31 H 0.026 0.974 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.024 0.976 37 H 0.037 0.963 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.036 0.964 44 H 0.033 0.967 45 H 0.270 0.730 46 H 0.217 0.783 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.334 5.497 -11.008 12.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.273 5.273 3 C -0.123 4.123 4 C -0.070 4.070 5 C -0.169 4.169 6 C -0.002 4.002 7 N -0.307 5.307 8 C 0.079 3.921 9 C -0.593 4.593 10 H 0.104 0.896 11 C -0.118 4.118 12 N -0.511 5.511 13 Si 0.688 3.312 14 H -0.192 1.192 15 H -0.207 1.207 16 H -0.188 1.188 17 C 0.357 3.643 18 O -0.434 6.434 19 C -0.176 4.176 20 C 0.008 3.992 21 N -0.187 5.187 22 C 0.074 3.926 23 N -0.273 5.273 24 H 0.282 0.718 25 C 0.392 3.608 26 O -0.431 6.431 27 N -0.282 5.282 28 H 0.278 0.722 29 C -0.084 4.084 30 C -0.045 4.045 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.080 0.920 46 H 0.232 0.768 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.495 4.211 -11.281 12.134 hybrid contribution -1.142 0.456 -0.275 1.260 sum 0.353 4.667 -11.556 12.468 Atomic orbital electron populations 1.22440 0.87482 1.02638 1.00192 1.61976 1.08045 1.13538 1.43721 1.22367 1.00777 0.88961 1.00245 1.22074 1.00259 0.93676 0.91020 1.21958 1.01489 0.93559 0.99893 1.21290 1.01152 0.79912 0.97839 1.47770 1.21761 1.08379 1.52823 1.20045 0.81644 0.95280 0.95128 1.21316 0.99950 1.45119 0.92928 0.89631 1.24837 0.98409 0.94033 0.94522 1.69872 1.32669 1.41399 1.07159 0.87044 0.84342 0.79878 0.79932 1.19190 1.20690 1.18847 1.17753 0.84045 0.84294 0.78220 1.90737 1.21825 1.77086 1.53766 1.20715 1.05439 0.96846 0.94598 1.24477 0.87239 0.85474 1.02025 1.66872 1.19616 1.13329 1.18859 1.18551 0.97472 0.86143 0.90465 1.42735 1.61551 1.12679 1.10373 0.71840 1.15736 0.80103 0.83394 0.81541 1.91106 1.61862 1.33671 1.56453 1.42806 1.62187 1.10988 1.12267 0.72229 1.18525 1.08149 0.93982 0.87755 1.20402 0.96178 0.90616 0.97341 0.95591 0.91757 0.90880 0.91368 0.91628 0.95756 0.94482 0.90557 0.91043 0.91768 0.89747 0.90245 0.94599 0.94913 0.91966 0.76754 0.83535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.32 60.06 0.56 0.78 16 2 N -0.55 -6.31 5.02 -251.27 -1.26 -7.57 16 3 C 0.02 0.23 9.57 60.07 0.57 0.81 16 4 C 0.06 0.69 4.96 -3.83 -0.02 0.67 16 5 C -0.13 -1.78 5.46 -26.73 -0.15 -1.92 16 6 C 0.12 1.92 5.46 -4.04 -0.02 1.89 16 7 N -0.58 -10.44 2.46 -176.25 -0.43 -10.87 16 8 C 0.20 3.94 3.73 -5.19 -0.02 3.92 16 9 C -0.56 -12.88 7.41 -34.44 -0.26 -13.14 16 10 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 11 C 0.09 2.17 5.47 -17.82 -0.10 2.07 16 12 N -0.88 -23.36 13.96 55.43 0.77 -22.58 16 13 Si 0.86 18.57 27.47 -169.99 -4.67 13.90 16 14 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.26 -5.38 6.54 56.52 0.37 -5.01 16 17 C 0.57 10.46 7.26 -12.42 -0.09 10.37 16 18 O -0.55 -11.09 16.58 5.29 0.09 -11.01 16 19 C -0.17 -2.86 4.97 -104.80 -0.52 -3.38 16 20 C 0.17 3.08 8.68 -17.13 -0.15 2.93 16 21 N -0.47 -8.36 10.37 -11.97 -0.12 -8.48 16 22 C 0.31 4.74 8.41 -155.02 -1.30 3.44 16 23 N -0.62 -8.27 6.10 -15.80 -0.10 -8.37 16 24 H 0.44 4.84 8.96 -40.82 -0.37 4.47 16 25 C 0.69 9.58 9.20 -87.21 -0.80 8.78 16 26 O -0.56 -9.08 18.05 5.22 0.09 -8.98 16 27 N -0.63 -7.43 6.17 -14.30 -0.09 -7.51 16 28 H 0.44 3.73 8.96 -40.82 -0.37 3.36 16 29 C 0.02 0.27 7.26 -83.78 -0.61 -0.33 16 30 C -0.02 -0.23 9.89 -38.81 -0.38 -0.61 16 31 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 33 H 0.07 0.80 6.47 -51.93 -0.34 0.46 16 34 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 35 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 36 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 38 H 0.08 0.88 8.06 -51.93 -0.42 0.46 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.89 6.55 -51.93 -0.34 0.55 16 41 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 42 H 0.08 1.27 7.36 -51.93 -0.38 0.89 16 43 H 0.04 0.70 7.17 -51.93 -0.37 0.33 16 44 H 0.03 0.65 4.82 -51.93 -0.25 0.40 16 45 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 46 H 0.22 4.44 4.73 -52.49 -0.25 4.19 16 47 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 386.48 15.07 5.82 5.82 Total: -1.00 -29.54 386.48 -9.64 -39.18 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -6.47 Total: 10.20 kcal Atomic # 6 Polarization: 19.56 SS G_CDS: -3.28 Total: 16.28 kcal Atomic # 7 Polarization: -64.16 SS G_CDS: -1.23 Total: -65.39 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.18 Total: -19.99 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -4.67 Total: 13.90 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.54 -9.64 -39.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289552969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.110 kcal (2) G-P(sol) polarization free energy of solvation -29.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds