Wall clock time and date at job start Wed Apr 1 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00343 * 2 1 4 4 C 1.46906 * 110.99830 * 123.95824 * 2 1 3 5 5 C 1.52990 * 109.47303 * 66.04422 * 4 2 1 6 6 C 1.53005 * 109.47342 * 179.97438 * 5 4 2 7 7 N 1.46495 * 109.47225 * 179.97438 * 6 5 4 8 8 C 1.46503 * 120.00118 * 270.00398 * 7 6 5 9 9 C 1.50706 * 109.46731 * 275.80715 * 8 7 6 10 10 H 1.07992 * 120.00070 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99677 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99710 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00062 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.47053 * 90.00025 * 13 11 9 15 15 H 1.48497 * 109.46998 * 209.99787 * 13 11 9 16 16 H 1.48500 * 109.47049 * 330.00014 * 13 11 9 17 17 C 1.34776 * 119.99838 * 90.00056 * 7 6 5 18 18 O 1.21583 * 120.00060 * 4.96254 * 17 7 6 19 19 C 1.47637 * 119.99964 * 184.95323 * 17 7 6 20 20 C 1.39669 * 120.49782 * 311.94730 * 19 17 7 21 21 N 1.31559 * 120.99386 * 180.02562 * 20 19 17 22 22 C 1.32522 * 121.81415 * 0.02562 * 21 20 19 23 23 N 1.38552 * 132.84926 * 179.97438 * 22 21 20 24 24 H 0.97001 * 125.67058 * 0.02562 * 23 22 21 25 25 C 1.34561 * 108.65987 * 179.97438 * 23 22 21 26 26 O 1.21670 * 125.14650 * 179.97438 * 25 23 22 27 27 N 1.34670 * 109.70922 * 0.02562 * 25 23 22 28 28 H 0.97003 * 125.95583 * 179.97438 * 27 25 23 29 29 C 1.39255 * 108.10195 * 359.76370 * 27 25 23 30 30 C 1.38338 * 133.56383 * 179.55398 * 29 27 25 31 31 H 1.09002 * 109.47100 * 296.04767 * 1 2 3 32 32 H 1.09000 * 109.46913 * 56.04262 * 1 2 3 33 33 H 1.08993 * 109.47141 * 176.04586 * 1 2 3 34 34 H 1.08993 * 109.47143 * 183.95170 * 3 2 1 35 35 H 1.08999 * 109.47072 * 303.95717 * 3 2 1 36 36 H 1.08999 * 109.46850 * 63.95552 * 3 2 1 37 37 H 1.09000 * 109.46677 * 306.03826 * 4 2 1 38 38 H 1.09003 * 109.46849 * 186.04355 * 4 2 1 39 39 H 1.09000 * 109.47741 * 60.00055 * 5 4 2 40 40 H 1.09003 * 109.47113 * 299.99771 * 5 4 2 41 41 H 1.09006 * 109.46547 * 59.99908 * 6 5 4 42 42 H 1.08994 * 109.47171 * 300.00034 * 6 5 4 43 43 H 1.08995 * 109.47472 * 35.80761 * 8 7 6 44 44 H 1.09005 * 109.46812 * 155.81174 * 8 7 6 45 45 H 0.97004 * 119.99580 * 180.02562 * 12 11 9 46 46 H 1.08000 * 119.50231 * 0.04305 * 20 19 17 47 47 H 1.08000 * 120.93769 * 0.67783 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 1.6314 -2.2426 0.9703 6 6 2.1802 -3.0406 2.1548 7 7 1.8311 -4.4544 1.9949 8 6 0.5746 -4.9657 2.5479 9 6 0.7690 -5.3095 4.0023 10 1 1.7320 -5.1614 4.4681 11 6 -0.2827 -5.8130 4.7382 12 7 -0.1132 -6.1125 6.0075 13 14 -1.9482 -6.0697 3.9322 14 1 -2.0162 -7.4391 3.3618 15 1 -3.0199 -5.9022 4.9464 16 1 -2.1325 -5.0720 2.8478 17 6 2.6660 -5.2846 1.3389 18 8 3.7486 -4.8825 0.9588 19 6 2.2659 -6.6823 1.0821 20 6 1.7381 -7.4686 2.1087 21 7 1.3789 -8.7153 1.8909 22 6 1.5004 -9.2790 0.6977 23 7 1.2030 -10.5447 0.2189 24 1 0.8259 -11.2719 0.7384 25 6 1.5233 -10.5972 -1.0870 26 8 1.3850 -11.5708 -1.8035 27 7 2.0210 -9.4094 -1.4807 28 1 2.3263 -9.1878 -2.3744 29 6 2.0164 -8.5530 -0.3826 30 6 2.4113 -7.2404 -0.1956 31 1 -0.3633 0.4513 0.9233 32 1 -0.3633 0.5740 -0.8524 33 1 -0.3633 -1.0251 -0.0709 34 1 3.0828 1.3432 -0.0708 35 1 1.5899 1.9163 -0.8524 36 1 1.7045 1.8723 0.9233 37 1 1.5611 -0.3873 2.0628 38 1 3.0797 -0.6612 1.1756 39 1 2.0657 -2.6215 0.0451 40 1 0.5471 -2.3475 0.9323 41 1 1.7462 -2.6620 3.0802 42 1 3.2645 -2.9358 2.1924 43 1 -0.1999 -4.2044 2.4549 44 1 0.2736 -5.8590 2.0005 45 1 -0.8530 -6.4670 6.5251 46 1 1.6228 -7.0467 3.0962 47 1 2.8154 -6.6605 -1.0122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289552969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:09 Heat of formation + Delta-G solvation = -6.519233 kcal Electronic energy + Delta-G solvation = -30762.877705 eV Core-core repulsion = 26560.207886 eV Total energy + Delta-G solvation = -4202.669819 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -43.82728 -41.33577 -39.80583 -38.59720 -37.53425 -36.96250 -35.59139 -34.74347 -33.38740 -32.62994 -30.53674 -29.85475 -28.45194 -27.35365 -25.28253 -24.81689 -24.41297 -23.81299 -23.42059 -21.76540 -20.80174 -19.78392 -19.25376 -18.98266 -17.79223 -17.77262 -17.66465 -17.52125 -16.94508 -16.54668 -16.31511 -16.21000 -16.02908 -15.78608 -15.30953 -15.04908 -14.89465 -14.77908 -14.71680 -14.29018 -14.20678 -13.52571 -13.30599 -13.21220 -13.16638 -12.88077 -12.65091 -12.57579 -12.55779 -12.40721 -12.27930 -12.13571 -12.11756 -11.99745 -11.65843 -11.43574 -11.24671 -10.80384 -10.56782 -10.40027 -9.47974 -9.28488 -9.23972 -8.28817 -6.34938 -0.38923 -0.04752 1.15737 1.40184 1.44157 1.48690 1.56265 1.67566 1.79608 2.20202 2.34806 2.56295 3.02900 3.06595 3.11607 3.46033 3.59528 3.80487 3.95187 4.00728 4.17906 4.22094 4.26521 4.43305 4.48842 4.53411 4.59825 4.66517 4.68571 4.73632 4.77936 4.85821 4.86581 4.93294 5.03988 5.05448 5.20620 5.24121 5.30420 5.34479 5.45249 5.62009 5.68218 5.90774 6.08881 6.14302 6.17469 6.54485 6.65402 6.73250 6.97844 7.15242 7.31754 8.85565 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008604 B = 0.003634 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3253.549148 B = 7702.543082 C = 9788.649212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.563 5.563 3 C 0.024 3.976 4 C 0.063 3.937 5 C -0.114 4.114 6 C 0.120 3.880 7 N -0.582 5.582 8 C 0.211 3.789 9 C -0.538 4.538 10 H 0.047 0.953 11 C 0.041 3.959 12 N -0.926 5.926 13 Si 0.915 3.085 14 H -0.268 1.268 15 H -0.286 1.286 16 H -0.239 1.239 17 C 0.571 3.429 18 O -0.573 6.573 19 C -0.180 4.180 20 C 0.157 3.843 21 N -0.494 5.494 22 C 0.302 3.698 23 N -0.616 5.616 24 H 0.448 0.552 25 C 0.695 3.305 26 O -0.577 6.577 27 N -0.614 5.614 28 H 0.453 0.547 29 C 0.037 3.963 30 C 0.003 3.997 31 H 0.027 0.973 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.027 0.973 37 H 0.039 0.961 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.046 0.954 44 H 0.042 0.958 45 H 0.269 0.731 46 H 0.187 0.813 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.745 6.068 -13.888 15.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.287 5.287 3 C -0.124 4.124 4 C -0.066 4.066 5 C -0.153 4.153 6 C -0.003 4.003 7 N -0.310 5.310 8 C 0.089 3.911 9 C -0.576 4.576 10 H 0.065 0.935 11 C -0.160 4.160 12 N -0.565 5.565 13 Si 0.739 3.261 14 H -0.193 1.193 15 H -0.212 1.212 16 H -0.162 1.162 17 C 0.358 3.642 18 O -0.454 6.454 19 C -0.187 4.187 20 C -0.004 4.004 21 N -0.207 5.207 22 C 0.066 3.934 23 N -0.265 5.265 24 H 0.292 0.708 25 C 0.394 3.606 26 O -0.454 6.454 27 N -0.262 5.262 28 H 0.299 0.701 29 C -0.069 4.069 30 C -0.026 4.026 31 H 0.045 0.955 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.046 0.954 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.203 0.797 47 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.914 4.810 -14.200 15.021 hybrid contribution -0.847 0.229 0.595 1.060 sum 0.067 5.039 -13.605 14.508 Atomic orbital electron populations 1.22462 0.86937 1.02466 1.00907 1.61974 1.08706 1.14766 1.43287 1.22419 1.01060 0.87877 1.00993 1.21983 1.00515 0.92578 0.91520 1.21772 1.01128 0.94356 0.98062 1.21393 1.00973 0.79137 0.98805 1.47808 1.21295 1.09316 1.52562 1.19825 0.82605 0.95856 0.92823 1.21369 0.98061 1.43645 0.94561 0.93466 1.25499 1.01766 0.94030 0.94732 1.70004 1.33702 1.43816 1.08938 0.86190 0.80154 0.80205 0.79569 1.19336 1.21198 1.16171 1.17944 0.83654 0.84778 0.77791 1.90721 1.22371 1.77618 1.54689 1.20563 1.06536 0.96000 0.95592 1.23851 0.89040 0.86204 1.01306 1.66718 1.20403 1.13228 1.20389 1.18635 0.97555 0.86948 0.90303 1.42741 1.61051 1.12332 1.10354 0.70796 1.15727 0.80003 0.83503 0.81343 1.91107 1.62805 1.34548 1.56928 1.42682 1.61172 1.09762 1.12602 0.70146 1.18425 1.06880 0.93736 0.87813 1.20565 0.94605 0.90636 0.96817 0.95484 0.90330 0.91613 0.91000 0.90368 0.95400 0.94283 0.90286 0.92048 0.91729 0.90147 0.90731 0.93570 0.94056 0.92179 0.79683 0.80594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.32 127.69 1.19 1.57 16 2 N -0.56 -11.89 5.02 -948.86 -4.76 -16.66 16 3 C 0.02 0.40 9.57 127.69 1.22 1.62 16 4 C 0.06 1.41 4.96 86.30 0.43 1.84 16 5 C -0.11 -3.00 5.46 30.59 0.17 -2.83 16 6 C 0.12 3.75 5.46 86.38 0.47 4.22 16 7 N -0.58 -20.84 2.46 -829.78 -2.04 -22.88 16 8 C 0.21 8.20 3.73 85.63 0.32 8.51 16 9 C -0.54 -25.63 7.41 25.60 0.19 -25.44 16 10 H 0.05 2.58 8.06 -2.91 -0.02 2.55 16 11 C 0.04 2.07 5.47 84.65 0.46 2.53 16 12 N -0.93 -51.32 13.96 21.45 0.30 -51.02 16 13 Si 0.92 38.01 27.47 68.60 1.88 39.90 16 14 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 15 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.24 -8.86 6.54 99.48 0.65 -8.21 16 17 C 0.57 20.62 7.26 86.73 0.63 21.25 16 18 O -0.57 -22.50 16.58 -3.98 -0.07 -22.57 16 19 C -0.18 -5.89 4.97 -19.98 -0.10 -5.99 16 20 C 0.16 5.74 8.68 85.08 0.74 6.48 16 21 N -0.49 -17.18 10.37 -191.80 -1.99 -19.17 16 22 C 0.30 8.72 8.41 133.40 1.12 9.84 16 23 N -0.62 -15.08 6.10 -322.26 -1.96 -17.04 16 24 H 0.45 9.16 8.96 -92.71 -0.83 8.33 16 25 C 0.69 17.41 9.20 179.16 1.65 19.06 16 26 O -0.58 -17.53 18.05 -4.25 -0.08 -17.61 16 27 N -0.61 -12.29 6.17 -317.45 -1.96 -14.25 16 28 H 0.45 5.99 8.96 -92.71 -0.83 5.16 16 29 C 0.04 0.90 7.26 38.42 0.28 1.18 16 30 C 0.00 0.07 9.89 22.77 0.23 0.29 16 31 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.08 1.24 8.12 -2.39 -0.02 1.22 16 33 H 0.07 1.32 6.47 -2.39 -0.02 1.31 16 34 H 0.07 1.12 8.12 -2.39 -0.02 1.10 16 35 H 0.08 1.08 8.12 -2.39 -0.02 1.06 16 36 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.04 0.86 8.12 -2.39 -0.02 0.84 16 38 H 0.08 1.72 8.06 -2.39 -0.02 1.71 16 39 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.06 1.69 6.55 -2.39 -0.02 1.68 16 41 H 0.08 2.56 8.07 -2.38 -0.02 2.54 16 42 H 0.07 2.40 7.36 -2.39 -0.02 2.39 16 43 H 0.05 1.73 7.17 -2.39 -0.02 1.71 16 44 H 0.04 1.58 4.82 -2.38 -0.01 1.57 16 45 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 46 H 0.19 7.97 4.73 -2.91 -0.01 7.95 16 47 H 0.18 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -64.31 386.48 -2.36 -66.67 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: -0.68 Total: 30.50 kcal Atomic # 6 Polarization: 35.15 SS G_CDS: 8.99 Total: 44.14 kcal Atomic # 7 Polarization: -128.61 SS G_CDS: -12.41 Total: -141.02 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -0.14 Total: -40.18 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 1.88 Total: 39.90 kcal Total: -64.31 -2.36 -66.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289552969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.146 kcal (2) G-P(sol) polarization free energy of solvation -64.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds