Wall clock time and date at job start Wed Apr 1 2020 05:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36856 * 119.67905 * 2 1 4 4 N 1.36389 * 120.47146 * 0.02562 * 3 2 1 5 5 C 1.46898 * 111.00202 * 264.22200 * 4 3 2 6 6 C 1.52995 * 109.47273 * 174.32368 * 5 4 3 7 7 C 1.53070 * 109.45783 * 64.78527 * 6 5 4 8 8 C 1.53188 * 109.29860 * 181.24592 * 7 6 5 9 9 N 1.46929 * 108.89109 * 305.57661 * 8 7 6 10 10 C 1.36939 * 120.63159 * 233.51359 * 9 8 7 11 11 H 1.07993 * 119.99862 * 148.27412 * 10 9 8 12 12 C 1.38810 * 119.99844 * 328.27341 * 10 9 8 13 13 N 1.31616 * 120.00436 * 340.89424 * 12 10 9 14 14 Si 1.86800 * 119.99831 * 160.89740 * 12 10 9 15 15 H 1.48492 * 109.47550 * 89.99597 * 14 12 10 16 16 H 1.48506 * 109.46977 * 210.00063 * 14 12 10 17 17 H 1.48503 * 109.46946 * 329.99622 * 14 12 10 18 18 C 1.46924 * 118.73442 * 53.54001 * 9 8 7 19 19 C 1.53043 * 109.45965 * 185.00078 * 6 5 4 20 20 C 1.39875 * 119.04848 * 179.74827 * 3 2 1 21 21 C 1.43208 * 120.75610 * 180.22918 * 20 3 2 22 22 N 4.79406 * 135.40395 * 0.24648 * 2 1 3 23 23 C 1.42079 * 118.48310 * 0.24499 * 20 3 2 24 24 O 1.21773 * 120.36353 * 180.02562 * 23 20 3 25 25 N 1.34767 * 119.27693 * 0.02562 * 23 20 3 26 26 C 1.46497 * 119.55535 * 180.02562 * 25 23 20 27 27 C 1.34395 * 120.88968 * 359.97438 * 25 23 20 28 28 O 1.21560 * 119.17013 * 180.02562 * 27 25 23 29 29 H 1.09002 * 109.46709 * 86.96460 * 1 2 3 30 30 H 1.08998 * 109.47513 * 206.96798 * 1 2 3 31 31 H 1.08997 * 109.47124 * 326.97002 * 1 2 3 32 32 H 1.00905 * 110.99532 * 140.27131 * 4 3 2 33 33 H 1.08994 * 109.47180 * 54.31835 * 5 4 3 34 34 H 1.09002 * 109.47111 * 294.32106 * 5 4 3 35 35 H 1.09003 * 109.45438 * 304.96813 * 6 5 4 36 36 H 1.09000 * 109.38641 * 61.36742 * 7 6 5 37 37 H 1.08996 * 109.62147 * 301.26449 * 7 6 5 38 38 H 1.09000 * 109.58771 * 185.71891 * 8 7 6 39 39 H 1.08999 * 109.58999 * 65.43839 * 8 7 6 40 40 H 0.96998 * 120.00479 * 180.02562 * 13 12 10 41 41 H 1.09003 * 109.59115 * 66.18193 * 18 9 8 42 42 H 1.09004 * 109.58642 * 186.45914 * 18 9 8 43 43 H 1.08999 * 109.49741 * 58.65874 * 19 6 5 44 44 H 1.08993 * 109.49435 * 298.56025 * 19 6 5 45 45 H 1.08999 * 109.47139 * 0.02562 * 26 25 23 46 46 H 1.09003 * 109.46670 * 119.99704 * 26 25 23 47 47 H 1.08995 * 109.47467 * 240.00019 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1427 1.1890 0.0000 4 7 1.4638 2.3720 0.0005 5 6 1.3210 2.8976 -1.3637 6 6 0.4366 4.1458 -1.3394 7 6 1.1369 5.2515 -0.5455 8 6 0.2350 6.4888 -0.4970 9 7 -0.1294 6.8659 -1.8695 10 6 0.0846 8.1402 -2.3231 11 1 0.3143 8.3112 -3.3644 12 6 0.0063 9.2119 -1.4445 13 7 -0.6242 9.0776 -0.2970 14 14 0.7957 10.8451 -1.8908 15 1 -0.1878 11.6885 -2.6164 16 1 1.2265 11.5415 -0.6520 17 1 1.9761 10.6034 -2.7588 18 6 -0.7284 5.8500 -2.7458 19 6 0.1856 4.6209 -2.7724 20 6 3.5413 1.1736 0.0054 21 6 4.2871 2.3962 0.0105 22 7 4.8787 3.3659 0.0145 23 6 4.2051 -0.0826 0.0053 24 8 5.4217 -0.1359 0.0104 25 7 3.4737 -1.2145 -0.0004 26 6 4.1518 -2.5130 0.0000 27 6 2.1306 -1.1680 -0.0055 28 8 1.5017 -2.2083 -0.0102 29 1 -0.3633 0.0544 -1.0263 30 1 -0.3634 -0.9159 0.4660 31 1 -0.3633 0.8616 0.5601 32 1 1.9125 3.0460 0.6026 33 1 0.8625 2.1398 -1.9989 34 1 2.3037 3.1563 -1.7582 35 1 -0.5149 3.9074 -0.8639 36 1 2.0780 5.5062 -1.0328 37 1 1.3340 4.9050 0.4689 38 1 0.7687 7.3116 -0.0215 39 1 -0.6670 6.2615 0.0712 40 1 -0.6792 9.8267 0.3168 41 1 -1.7088 5.5682 -2.3618 42 1 -0.8326 6.2522 -3.7535 43 1 -0.2930 3.8238 -3.3413 44 1 1.1345 4.8832 -3.2401 45 1 5.2309 -2.3594 0.0058 46 1 3.8604 -3.0747 0.8876 47 1 3.8687 -3.0711 -0.8924 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301604429.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:05 Heat of formation + Delta-G solvation = 31.586663 kcal Electronic energy + Delta-G solvation = -31114.281083 eV Core-core repulsion = 26913.263660 eV Total energy + Delta-G solvation = -4201.017423 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -42.97066 -39.72646 -39.55551 -37.81701 -36.55935 -35.70036 -35.52516 -33.36718 -32.00801 -30.69517 -30.00014 -28.35704 -27.56059 -26.55095 -24.69524 -24.07894 -23.26979 -22.22058 -21.17339 -20.05724 -19.97313 -19.21485 -18.13791 -17.72419 -16.94224 -16.82670 -16.28665 -15.99984 -15.77587 -15.32455 -15.03384 -14.85203 -14.41716 -14.17670 -13.71284 -13.62969 -13.49476 -13.43477 -13.28660 -13.21800 -12.93221 -12.81053 -12.72781 -12.69639 -12.47482 -12.01703 -11.61855 -11.54157 -11.44348 -11.06183 -10.86613 -10.74115 -10.67561 -10.37538 -10.28653 -10.26536 -9.99446 -9.82417 -9.60835 -9.49569 -8.94175 -8.50404 -6.67984 -5.84771 -3.28727 -0.04530 1.19198 1.36630 2.04322 2.53346 2.72539 3.20302 3.34358 3.34805 3.42079 3.42704 3.45613 4.12713 4.46623 4.56582 4.63131 4.71450 4.85330 4.86521 4.88515 4.93791 4.98547 5.06086 5.17233 5.28123 5.30679 5.31606 5.41625 5.51310 5.58048 5.63373 5.84159 6.00813 6.06452 6.20491 6.32904 6.37930 6.45925 6.56026 6.64633 6.65035 6.72905 6.90430 6.95459 7.24939 7.32886 7.41705 7.52005 7.77684 8.42325 9.16606 9.79672 10.38306 11.23771 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019395 B = 0.002546 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.360273 B =10994.107114 C =11882.462264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.511 5.511 3 C 0.478 3.522 4 N -0.653 5.653 5 C 0.071 3.929 6 C -0.075 4.075 7 C -0.139 4.139 8 C 0.177 3.823 9 N -0.590 5.590 10 C -0.259 4.259 11 H 0.062 0.938 12 C 0.009 3.991 13 N -0.897 5.897 14 Si 0.898 3.102 15 H -0.286 1.286 16 H -0.289 1.289 17 H -0.279 1.279 18 C 0.147 3.853 19 C -0.127 4.127 20 C -0.264 4.264 21 C 0.272 3.728 22 N -0.392 5.392 23 C 0.576 3.424 24 O -0.505 6.505 25 N -0.554 5.554 26 C 0.080 3.920 27 C 0.701 3.299 28 O -0.523 6.523 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.390 0.610 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.021 0.979 40 H 0.254 0.746 41 H 0.018 0.982 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.059 0.941 45 H 0.105 0.895 46 H 0.081 0.919 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.008 -23.435 1.389 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.229 5.229 3 C 0.264 3.736 4 N -0.288 5.288 5 C -0.053 4.053 6 C -0.094 4.094 7 C -0.179 4.179 8 C 0.051 3.949 9 N -0.313 5.313 10 C -0.389 4.389 11 H 0.080 0.920 12 C -0.191 4.191 13 N -0.541 5.541 14 Si 0.727 3.273 15 H -0.213 1.213 16 H -0.215 1.215 17 H -0.204 1.204 18 C 0.020 3.980 19 C -0.167 4.167 20 C -0.281 4.281 21 C -0.044 4.044 22 N -0.069 5.069 23 C 0.371 3.629 24 O -0.380 6.380 25 N -0.298 5.298 26 C -0.061 4.061 27 C 0.403 3.597 28 O -0.394 6.394 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.219 0.781 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.039 0.961 40 H 0.064 0.936 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.123 0.877 46 H 0.100 0.900 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.485 -22.820 1.529 23.006 hybrid contribution 0.924 0.800 -0.140 1.230 sum 3.409 -22.020 1.389 22.325 Atomic orbital electron populations 1.22275 0.73027 1.06344 1.04980 1.44947 1.10569 1.03007 1.64418 1.19017 0.87088 0.86205 0.81327 1.56476 1.53603 1.03747 1.15019 1.22497 1.01292 0.98272 0.83280 1.21132 0.98431 0.91878 0.98003 1.22278 1.00360 0.97758 0.97458 1.20616 0.94778 0.93043 0.86481 1.43992 1.70077 1.07212 1.10005 1.19083 1.42241 0.82453 0.95098 0.91982 1.25097 0.98664 0.97619 0.97729 1.70050 1.41840 1.31298 1.10867 0.86387 0.79552 0.83918 0.77455 1.21301 1.21506 1.20395 1.20869 0.93120 0.88773 0.95190 1.22035 1.01320 0.98960 0.94345 1.16649 0.89461 0.89672 1.32337 1.24074 0.94535 0.91724 0.94021 1.81360 1.05713 1.10024 1.09804 1.16405 0.87389 0.82730 0.76401 1.90917 1.12244 1.86504 1.48284 1.46095 1.05576 1.10838 1.67249 1.21981 0.99392 0.80612 1.04088 1.15597 0.81799 0.83560 0.78718 1.91047 1.65658 1.29644 1.53067 0.90025 0.88209 0.87311 0.78072 0.89941 0.92611 0.90195 0.92554 0.93551 0.90557 0.96137 0.93604 0.96430 0.92715 0.92942 0.92220 0.87674 0.90013 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 10.10 59.85 0.60 0.99 16 2 N -0.51 -3.86 3.01 -127.80 -0.38 -4.25 16 3 C 0.48 4.04 5.98 -153.25 -0.92 3.13 16 4 N -0.65 -5.53 4.96 -59.52 -0.30 -5.83 16 5 C 0.07 0.68 4.91 -3.83 -0.02 0.67 16 6 C -0.08 -0.98 2.35 -90.56 -0.21 -1.19 16 7 C -0.14 -2.28 5.16 -26.60 -0.14 -2.42 16 8 C 0.18 3.89 5.29 -3.71 -0.02 3.87 16 9 N -0.59 -13.95 2.97 -172.32 -0.51 -14.46 16 10 C -0.26 -6.92 9.52 -15.06 -0.14 -7.07 16 11 H 0.06 1.64 7.90 -52.49 -0.41 1.23 16 12 C 0.01 0.23 4.82 -17.43 -0.08 0.15 16 13 N -0.90 -25.52 11.62 55.49 0.64 -24.87 16 14 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.15 2.81 6.52 -3.71 -0.02 2.78 16 19 C -0.13 -1.84 5.37 -26.61 -0.14 -1.99 16 20 C -0.26 -2.81 5.81 -105.88 -0.61 -3.43 16 21 C 0.27 3.60 13.22 -22.47 -0.30 3.31 16 22 N -0.39 -6.15 18.54 41.84 0.78 -5.37 16 23 C 0.58 6.50 7.44 -14.79 -0.11 6.39 16 24 O -0.51 -7.15 15.89 5.12 0.08 -7.07 16 25 N -0.55 -5.09 2.95 -131.45 -0.39 -5.48 16 26 C 0.08 0.54 9.94 59.85 0.59 1.14 16 27 C 0.70 6.34 8.10 -87.57 -0.71 5.63 16 28 O -0.52 -5.52 15.65 5.31 0.08 -5.44 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.10 0.51 7.27 -51.93 -0.38 0.13 16 31 H 0.11 0.51 7.43 -51.93 -0.39 0.12 16 32 H 0.39 3.62 6.23 -39.29 -0.24 3.37 16 33 H 0.08 0.66 8.10 -51.93 -0.42 0.23 16 34 H 0.06 0.61 7.60 -51.93 -0.39 0.22 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.66 6.76 -51.93 -0.35 0.31 16 38 H 0.08 1.94 6.42 -51.93 -0.33 1.60 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.10 0.72 6.87 -51.93 -0.36 0.37 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 385.15 15.07 5.80 5.80 Total: -1.00 -32.88 385.15 -8.08 -40.97 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -6.63 Total: -2.36 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: -2.23 Total: 11.97 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.16 Total: -60.26 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.16 Total: -12.51 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.88 -8.08 -40.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301604429.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.552 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds