Wall clock time and date at job start Wed Apr 1 2020 05:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36856 * 119.67905 * 2 1 4 4 N 1.36389 * 120.47146 * 0.02562 * 3 2 1 5 5 C 1.46898 * 111.00202 * 264.22200 * 4 3 2 6 6 C 1.52995 * 109.47273 * 174.32368 * 5 4 3 7 7 C 1.53070 * 109.45783 * 64.78527 * 6 5 4 8 8 C 1.53188 * 109.29860 * 181.24592 * 7 6 5 9 9 N 1.46929 * 108.89109 * 305.57661 * 8 7 6 10 10 C 1.36939 * 120.63159 * 233.51359 * 9 8 7 11 11 H 1.07993 * 119.99862 * 148.27412 * 10 9 8 12 12 C 1.38810 * 119.99844 * 328.27341 * 10 9 8 13 13 N 1.31616 * 120.00436 * 340.89424 * 12 10 9 14 14 Si 1.86800 * 119.99831 * 160.89740 * 12 10 9 15 15 H 1.48492 * 109.47550 * 89.99597 * 14 12 10 16 16 H 1.48506 * 109.46977 * 210.00063 * 14 12 10 17 17 H 1.48503 * 109.46946 * 329.99622 * 14 12 10 18 18 C 1.46924 * 118.73442 * 53.54001 * 9 8 7 19 19 C 1.53043 * 109.45965 * 185.00078 * 6 5 4 20 20 C 1.39875 * 119.04848 * 179.74827 * 3 2 1 21 21 C 1.43208 * 120.75610 * 180.22918 * 20 3 2 22 22 N 4.79406 * 135.40395 * 0.24648 * 2 1 3 23 23 C 1.42079 * 118.48310 * 0.24499 * 20 3 2 24 24 O 1.21773 * 120.36353 * 180.02562 * 23 20 3 25 25 N 1.34767 * 119.27693 * 0.02562 * 23 20 3 26 26 C 1.46497 * 119.55535 * 180.02562 * 25 23 20 27 27 C 1.34395 * 120.88968 * 359.97438 * 25 23 20 28 28 O 1.21560 * 119.17013 * 180.02562 * 27 25 23 29 29 H 1.09002 * 109.46709 * 86.96460 * 1 2 3 30 30 H 1.08998 * 109.47513 * 206.96798 * 1 2 3 31 31 H 1.08997 * 109.47124 * 326.97002 * 1 2 3 32 32 H 1.00905 * 110.99532 * 140.27131 * 4 3 2 33 33 H 1.08994 * 109.47180 * 54.31835 * 5 4 3 34 34 H 1.09002 * 109.47111 * 294.32106 * 5 4 3 35 35 H 1.09003 * 109.45438 * 304.96813 * 6 5 4 36 36 H 1.09000 * 109.38641 * 61.36742 * 7 6 5 37 37 H 1.08996 * 109.62147 * 301.26449 * 7 6 5 38 38 H 1.09000 * 109.58771 * 185.71891 * 8 7 6 39 39 H 1.08999 * 109.58999 * 65.43839 * 8 7 6 40 40 H 0.96998 * 120.00479 * 180.02562 * 13 12 10 41 41 H 1.09003 * 109.59115 * 66.18193 * 18 9 8 42 42 H 1.09004 * 109.58642 * 186.45914 * 18 9 8 43 43 H 1.08999 * 109.49741 * 58.65874 * 19 6 5 44 44 H 1.08993 * 109.49435 * 298.56025 * 19 6 5 45 45 H 1.08999 * 109.47139 * 0.02562 * 26 25 23 46 46 H 1.09003 * 109.46670 * 119.99704 * 26 25 23 47 47 H 1.08995 * 109.47467 * 240.00019 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1427 1.1890 0.0000 4 7 1.4638 2.3720 0.0005 5 6 1.3210 2.8976 -1.3637 6 6 0.4366 4.1458 -1.3394 7 6 1.1369 5.2515 -0.5455 8 6 0.2350 6.4888 -0.4970 9 7 -0.1294 6.8659 -1.8695 10 6 0.0846 8.1402 -2.3231 11 1 0.3143 8.3112 -3.3644 12 6 0.0063 9.2119 -1.4445 13 7 -0.6242 9.0776 -0.2970 14 14 0.7957 10.8451 -1.8908 15 1 -0.1878 11.6885 -2.6164 16 1 1.2265 11.5415 -0.6520 17 1 1.9761 10.6034 -2.7588 18 6 -0.7284 5.8500 -2.7458 19 6 0.1856 4.6209 -2.7724 20 6 3.5413 1.1736 0.0054 21 6 4.2871 2.3962 0.0105 22 7 4.8787 3.3659 0.0145 23 6 4.2051 -0.0826 0.0053 24 8 5.4217 -0.1359 0.0104 25 7 3.4737 -1.2145 -0.0004 26 6 4.1518 -2.5130 0.0000 27 6 2.1306 -1.1680 -0.0055 28 8 1.5017 -2.2083 -0.0102 29 1 -0.3633 0.0544 -1.0263 30 1 -0.3634 -0.9159 0.4660 31 1 -0.3633 0.8616 0.5601 32 1 1.9125 3.0460 0.6026 33 1 0.8625 2.1398 -1.9989 34 1 2.3037 3.1563 -1.7582 35 1 -0.5149 3.9074 -0.8639 36 1 2.0780 5.5062 -1.0328 37 1 1.3340 4.9050 0.4689 38 1 0.7687 7.3116 -0.0215 39 1 -0.6670 6.2615 0.0712 40 1 -0.6792 9.8267 0.3168 41 1 -1.7088 5.5682 -2.3618 42 1 -0.8326 6.2522 -3.7535 43 1 -0.2930 3.8238 -3.3413 44 1 1.1345 4.8832 -3.2401 45 1 5.2309 -2.3594 0.0058 46 1 3.8604 -3.0747 0.8876 47 1 3.8687 -3.0711 -0.8924 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301604429.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:04 Heat of formation + Delta-G solvation = 11.139482 kcal Electronic energy + Delta-G solvation = -31115.167739 eV Core-core repulsion = 26913.263660 eV Total energy + Delta-G solvation = -4201.904079 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.72301 -40.57833 -40.40011 -39.10526 -37.57179 -36.60398 -36.49300 -34.84265 -33.08807 -32.13247 -31.52663 -29.12009 -28.42450 -27.58576 -25.81422 -25.29845 -24.19210 -23.60859 -22.54085 -20.87603 -20.78110 -20.56691 -18.94399 -18.65084 -18.45980 -17.69825 -17.07719 -16.79740 -16.75720 -16.54364 -16.05625 -15.92945 -15.71123 -15.31178 -15.16160 -14.97898 -14.68706 -14.34314 -14.33208 -14.14416 -13.96508 -13.90331 -13.84746 -13.46618 -13.30920 -13.19902 -13.01732 -12.81715 -12.55930 -12.42942 -12.35423 -12.15479 -11.98491 -11.85303 -11.72875 -11.59180 -11.14476 -11.05057 -10.97705 -10.53732 -10.51057 -9.76158 -8.61337 -7.89029 -5.34826 -0.82200 0.50910 0.56305 1.18523 1.42755 1.45893 1.54411 1.67063 1.84946 2.34927 2.49384 2.50868 2.57264 3.25240 3.29895 3.73298 3.78877 3.83797 3.88495 4.07429 4.11369 4.27209 4.33390 4.41737 4.44453 4.45680 4.53258 4.56436 4.65541 4.69721 4.77444 4.81463 4.91364 4.93588 4.99038 5.07406 5.18761 5.25184 5.34530 5.37151 5.44830 5.56588 5.59100 5.68387 5.80315 5.89765 6.19540 6.37951 6.41245 6.60767 7.16915 7.89564 8.40779 9.16260 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019395 B = 0.002546 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.360273 B =10994.107114 C =11882.462264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.499 5.499 3 C 0.511 3.489 4 N -0.643 5.643 5 C 0.081 3.919 6 C -0.065 4.065 7 C -0.126 4.126 8 C 0.182 3.818 9 N -0.611 5.611 10 C -0.265 4.265 11 H 0.059 0.941 12 C -0.044 4.044 13 N -0.929 5.929 14 Si 0.956 3.044 15 H -0.282 1.282 16 H -0.293 1.293 17 H -0.274 1.274 18 C 0.140 3.860 19 C -0.116 4.116 20 C -0.283 4.283 21 C 0.293 3.707 22 N -0.446 5.446 23 C 0.580 3.420 24 O -0.543 6.543 25 N -0.551 5.551 26 C 0.075 3.925 27 C 0.703 3.297 28 O -0.532 6.532 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.388 0.612 33 H 0.117 0.883 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.038 0.962 37 H 0.068 0.932 38 H 0.032 0.968 39 H 0.004 0.996 40 H 0.249 0.751 41 H 0.020 0.980 42 H 0.047 0.953 43 H 0.095 0.905 44 H 0.048 0.952 45 H 0.101 0.899 46 H 0.094 0.906 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 -26.084 0.593 26.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.216 5.216 3 C 0.294 3.706 4 N -0.278 5.278 5 C -0.043 4.043 6 C -0.084 4.084 7 C -0.165 4.165 8 C 0.056 3.944 9 N -0.335 5.335 10 C -0.396 4.396 11 H 0.077 0.923 12 C -0.241 4.241 13 N -0.574 5.574 14 Si 0.784 3.216 15 H -0.208 1.208 16 H -0.220 1.220 17 H -0.200 1.200 18 C 0.015 3.985 19 C -0.155 4.155 20 C -0.300 4.300 21 C -0.022 4.022 22 N -0.123 5.123 23 C 0.375 3.625 24 O -0.420 6.420 25 N -0.294 5.294 26 C -0.065 4.065 27 C 0.406 3.594 28 O -0.404 6.404 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.138 0.862 32 H 0.217 0.783 33 H 0.135 0.865 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.051 0.949 39 H 0.022 0.978 40 H 0.058 0.942 41 H 0.038 0.962 42 H 0.066 0.934 43 H 0.113 0.887 44 H 0.067 0.933 45 H 0.119 0.881 46 H 0.113 0.887 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.411 -25.526 0.710 25.574 hybrid contribution 1.112 1.537 0.095 1.899 sum 2.522 -23.988 0.806 24.134 Atomic orbital electron populations 1.22591 0.71063 1.07125 1.06487 1.45091 1.11539 1.02118 1.62840 1.18750 0.86120 0.86427 0.79292 1.56475 1.53163 1.03627 1.14524 1.22317 1.00333 0.97582 0.84036 1.20983 0.99163 0.91834 0.96432 1.22057 0.98382 0.96564 0.99467 1.20437 0.94495 0.93976 0.85448 1.44286 1.70977 1.07276 1.10968 1.19385 1.41046 0.84133 0.95029 0.92302 1.25768 0.99685 1.00591 0.98006 1.70170 1.43554 1.31843 1.11823 0.85465 0.78757 0.80500 0.76876 1.20834 1.21974 1.19955 1.21074 0.94137 0.89531 0.93807 1.21887 0.99935 0.97860 0.95844 1.16545 0.90213 0.88502 1.34770 1.24394 0.93629 0.91607 0.92553 1.81374 1.07173 1.11720 1.12063 1.16426 0.86949 0.83279 0.75814 1.90904 1.13729 1.86994 1.50365 1.46141 1.05765 1.11030 1.66446 1.22176 0.99142 0.79802 1.05400 1.15613 0.81551 0.83744 0.78510 1.91057 1.65735 1.30067 1.53562 0.88148 0.87808 0.86246 0.78295 0.86495 0.93511 0.89021 0.94339 0.91389 0.94940 0.97817 0.94156 0.96248 0.93403 0.88659 0.93297 0.88065 0.88711 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 10.10 127.77 1.29 1.68 16 2 N -0.50 -5.62 3.01 -676.71 -2.04 -7.66 16 3 C 0.51 6.96 5.98 132.72 0.79 7.75 16 4 N -0.64 -8.58 4.96 -342.23 -1.70 -10.27 16 5 C 0.08 1.24 4.91 86.30 0.42 1.66 16 6 C -0.07 -1.48 2.35 -10.76 -0.03 -1.51 16 7 C -0.13 -4.00 5.16 30.68 0.16 -3.84 16 8 C 0.18 8.18 5.29 86.36 0.46 8.64 16 9 N -0.61 -29.23 2.97 -699.10 -2.08 -31.31 16 10 C -0.27 -14.46 9.52 84.03 0.80 -13.66 16 11 H 0.06 3.17 7.90 -2.91 -0.02 3.15 16 12 C -0.04 -2.47 4.82 84.86 0.41 -2.06 16 13 N -0.93 -54.58 11.62 21.65 0.25 -54.33 16 14 Si 0.96 45.09 29.59 68.60 2.03 47.12 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 16 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 17 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 18 C 0.14 5.17 6.52 86.36 0.56 5.73 16 19 C -0.12 -3.01 5.37 30.67 0.16 -2.84 16 20 C -0.28 -5.53 5.81 -20.68 -0.12 -5.65 16 21 C 0.29 7.58 13.22 88.33 1.17 8.74 16 22 N -0.45 -14.08 18.54 19.01 0.35 -13.73 16 23 C 0.58 12.32 7.44 85.20 0.63 12.95 16 24 O -0.54 -15.23 15.89 -4.58 -0.07 -15.30 16 25 N -0.55 -8.96 2.95 -806.47 -2.38 -11.34 16 26 C 0.07 0.88 9.94 127.77 1.27 2.15 16 27 C 0.70 10.50 8.10 179.28 1.45 11.95 16 28 O -0.53 -9.48 15.65 -3.91 -0.06 -9.54 16 29 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.10 0.63 7.27 -2.39 -0.02 0.61 16 31 H 0.12 0.53 7.43 -2.39 -0.02 0.51 16 32 H 0.39 6.11 6.23 -89.69 -0.56 5.55 16 33 H 0.12 1.11 8.10 -2.39 -0.02 1.10 16 34 H 0.05 0.87 7.60 -2.39 -0.02 0.85 16 35 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.85 6.76 -2.39 -0.02 1.84 16 38 H 0.03 1.71 6.42 -2.39 -0.02 1.70 16 39 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 41 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.05 1.80 7.93 -2.39 -0.02 1.78 16 43 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.10 1.30 6.87 -2.39 -0.02 1.29 16 46 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -75.13 385.15 4.20 -70.92 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: 0.45 Total: 3.71 kcal Atomic # 6 Polarization: 22.28 SS G_CDS: 9.44 Total: 31.72 kcal Atomic # 7 Polarization: -121.05 SS G_CDS: -7.59 Total: -128.63 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.13 Total: -24.84 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -75.13 4.20 -70.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301604429.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.063 kcal (2) G-P(sol) polarization free energy of solvation -75.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds