Wall clock time and date at job start Wed Apr 1 2020 05:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99956 * 2 1 4 4 C 1.46895 * 111.00082 * 123.95676 * 2 1 3 5 5 C 1.52997 * 109.47482 * 169.99957 * 4 2 1 6 6 C 1.52998 * 109.47670 * 179.97438 * 5 4 2 7 7 N 1.46498 * 109.47252 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00170 * 270.00102 * 7 6 5 9 9 C 1.50696 * 109.47100 * 270.00080 * 8 7 6 10 10 H 1.08003 * 120.00325 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00113 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00118 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00289 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46910 * 89.99974 * 13 11 9 15 15 H 1.48495 * 109.47423 * 209.99868 * 13 11 9 16 16 H 1.48502 * 109.47144 * 329.99903 * 13 11 9 17 17 C 1.34775 * 119.99416 * 90.00555 * 7 6 5 18 18 O 1.21277 * 120.00502 * 359.97438 * 17 7 6 19 19 C 1.50702 * 119.99774 * 179.97438 * 17 7 6 20 20 C 1.50695 * 109.47433 * 179.97438 * 19 17 7 21 21 C 1.38205 * 120.09117 * 89.99873 * 20 19 17 22 22 F 1.35099 * 119.94568 * 359.72633 * 21 20 19 23 23 C 1.38555 * 120.09903 * 179.70702 * 21 20 19 24 24 C 1.38345 * 120.28149 * 0.02562 * 23 21 20 25 25 C 1.37933 * 120.17854 * 0.02562 * 24 23 21 26 26 C 1.39588 * 120.09297 * 269.72790 * 20 19 17 27 27 C 1.43196 * 120.13479 * 0.24699 * 26 20 19 28 28 N 6.83360 * 169.32867 * 350.20454 * 2 1 3 29 29 H 1.08998 * 109.47127 * 296.04444 * 1 2 3 30 30 H 1.09004 * 109.47097 * 56.04166 * 1 2 3 31 31 H 1.09001 * 109.47182 * 176.04337 * 1 2 3 32 32 H 1.08998 * 109.47091 * 183.95003 * 3 2 1 33 33 H 1.09001 * 109.47360 * 303.95838 * 3 2 1 34 34 H 1.09004 * 109.46882 * 63.95531 * 3 2 1 35 35 H 1.09002 * 109.47432 * 49.99685 * 4 2 1 36 36 H 1.09001 * 109.47064 * 290.00086 * 4 2 1 37 37 H 1.09002 * 109.47009 * 59.99469 * 5 4 2 38 38 H 1.09001 * 109.47076 * 300.00122 * 5 4 2 39 39 H 1.09002 * 109.46736 * 59.99935 * 6 5 4 40 40 H 1.09001 * 109.47080 * 300.00254 * 6 5 4 41 41 H 1.08996 * 109.47182 * 30.00131 * 8 7 6 42 42 H 1.08999 * 109.46792 * 150.00126 * 8 7 6 43 43 H 0.96991 * 120.00589 * 180.02562 * 12 11 9 44 44 H 1.09001 * 109.47143 * 59.99842 * 19 17 7 45 45 H 1.09000 * 109.46930 * 300.00135 * 19 17 7 46 46 H 1.08007 * 119.85576 * 180.02562 * 23 21 20 47 47 H 1.07996 * 119.90805 * 180.02562 * 24 23 21 48 48 H 1.08006 * 120.04530 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5044 -0.9554 0.9703 6 6 4.0529 -1.7527 2.1554 7 7 5.4977 -1.9345 1.9949 8 6 6.0139 -3.1062 1.2829 9 6 6.2357 -4.2309 2.2611 10 1 6.0147 -4.0872 3.3084 11 6 6.7218 -5.4431 1.8192 12 7 6.9915 -5.6180 0.5439 13 14 6.9961 -6.8375 3.0315 14 1 5.7594 -7.6530 3.1359 15 1 8.1142 -7.6924 2.5581 16 1 7.3326 -6.2757 4.3643 17 6 6.3518 -1.0238 2.5023 18 8 5.9245 -0.0537 3.0914 19 6 7.8381 -1.2111 2.3378 20 6 8.5643 -0.0628 2.9896 21 6 8.9356 -0.1426 4.3185 22 9 8.6421 -1.2494 5.0354 23 6 9.6087 0.9106 4.9163 24 6 9.9126 2.0472 4.1885 25 6 9.5466 2.1396 2.8619 26 6 8.8690 1.0821 2.2515 27 6 8.4879 1.1718 0.8740 28 7 8.1844 1.2470 -0.2153 29 1 -0.3633 0.4512 0.9233 30 1 -0.3633 0.5741 -0.8524 31 1 -0.3633 -1.0252 -0.0709 32 1 3.0828 1.3433 -0.0708 33 1 1.5898 1.9164 -0.8524 34 1 1.7044 1.8723 0.9234 35 1 1.5090 -1.7407 1.1756 36 1 1.7975 -0.2248 2.0627 37 1 3.9909 0.0193 0.9322 38 1 3.7024 -1.4966 0.0451 39 1 3.5664 -2.7274 2.1938 40 1 3.8550 -1.2111 3.0804 41 1 5.2934 -3.4187 0.5272 42 1 6.9582 -2.8518 0.8015 43 1 7.3331 -6.4708 0.2329 44 1 8.0852 -1.2413 1.2766 45 1 8.1406 -2.1467 2.8081 46 1 9.8974 0.8439 5.9550 47 1 10.4379 2.8644 4.6605 48 1 9.7846 3.0281 2.2958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351543434.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:20 Heat of formation + Delta-G solvation = -25.125352 kcal Electronic energy + Delta-G solvation = -30762.713674 eV Core-core repulsion = 26539.317072 eV Total energy + Delta-G solvation = -4223.396602 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -48.78236 -39.90351 -38.78981 -37.54810 -36.35855 -35.22517 -33.23149 -32.67875 -31.49736 -30.95713 -28.04389 -27.58196 -27.37235 -25.61100 -24.04566 -23.02734 -22.79870 -21.67044 -20.61403 -19.19521 -18.34465 -16.91407 -16.65830 -16.49217 -16.12518 -15.93302 -15.60295 -15.52433 -15.26192 -14.98461 -14.65235 -14.40841 -14.21236 -13.89575 -13.80124 -13.66874 -13.34258 -13.05580 -12.69662 -12.63930 -12.52408 -12.36513 -12.21973 -12.00231 -11.95734 -11.78090 -11.69321 -11.48901 -11.44447 -11.22943 -11.17068 -11.14217 -10.89772 -10.73391 -10.26523 -10.10263 -9.76773 -9.33336 -8.96324 -8.70618 -8.56413 -8.33301 -7.77247 -6.19849 -4.28186 0.60343 1.06123 2.71721 2.87024 3.22391 3.27970 3.30369 3.35287 3.62869 3.75789 3.88757 4.10546 4.30193 4.33323 4.62138 4.74492 4.76555 5.07263 5.12648 5.13363 5.15707 5.28682 5.34012 5.38476 5.45242 5.57354 5.59088 5.64950 5.71091 5.79525 5.79908 5.82208 5.91936 5.98578 6.00958 6.03716 6.07908 6.16517 6.24418 6.47298 6.61352 6.67915 6.75190 7.05023 7.07871 7.15191 7.48626 7.51658 7.74512 8.02292 8.26541 8.75212 8.93265 9.40302 10.86806 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.005876 B = 0.004861 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4763.786926 B = 5758.576812 C = 9175.383031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.023 3.977 4 C 0.060 3.940 5 C -0.129 4.129 6 C 0.124 3.876 7 N -0.590 5.590 8 C 0.236 3.764 9 C -0.540 4.540 10 H 0.062 0.938 11 C 0.067 3.933 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.271 1.271 17 C 0.524 3.476 18 O -0.568 6.568 19 C -0.112 4.112 20 C -0.039 4.039 21 C 0.115 3.885 22 F -0.125 7.125 23 C -0.126 4.126 24 C -0.099 4.099 25 C -0.083 4.083 26 C 0.007 3.993 27 C 0.255 3.745 28 N -0.404 5.404 29 H 0.022 0.978 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.023 0.977 35 H 0.076 0.924 36 H 0.033 0.967 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.039 0.961 42 H 0.036 0.964 43 H 0.266 0.734 44 H 0.103 0.897 45 H 0.127 0.873 46 H 0.141 0.859 47 H 0.141 0.859 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 13.916 5.140 14.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.126 4.126 4 C -0.069 4.069 5 C -0.168 4.168 6 C -0.001 4.001 7 N -0.319 5.319 8 C 0.116 3.884 9 C -0.579 4.579 10 H 0.081 0.919 11 C -0.137 4.137 12 N -0.527 5.527 13 Si 0.723 3.277 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.196 1.196 17 C 0.311 3.689 18 O -0.450 6.450 19 C -0.151 4.151 20 C -0.043 4.043 21 C 0.095 3.905 22 F -0.104 7.104 23 C -0.146 4.146 24 C -0.117 4.117 25 C -0.104 4.104 26 C 0.004 3.996 27 C -0.061 4.061 28 N -0.079 5.079 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.042 0.958 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.121 0.879 45 H 0.145 0.855 46 H 0.159 0.841 47 H 0.159 0.841 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.113 14.082 3.184 14.438 hybrid contribution -0.086 -0.917 1.780 2.004 sum 0.027 13.166 4.964 14.070 Atomic orbital electron populations 1.22368 0.87646 1.02172 1.00118 1.61962 1.07487 1.13958 1.43744 1.22420 1.01469 0.88695 0.99973 1.22069 0.95964 0.98010 0.90808 1.21944 0.93761 1.01090 1.00009 1.21209 0.81114 1.00211 0.97521 1.48141 1.05238 1.23949 1.54600 1.19482 0.95378 0.81315 0.92236 1.21480 1.44737 0.96797 0.94881 0.91938 1.24939 0.94944 0.98528 0.95269 1.69922 1.43886 1.25219 1.13720 0.86526 0.77982 0.81849 0.81362 1.20498 1.21033 1.19613 1.19985 0.87826 0.82402 0.78651 1.90609 1.79339 1.30910 1.44096 1.20748 0.93214 0.98104 1.03036 1.19591 0.97040 0.95158 0.92478 1.17253 0.99579 0.84726 0.88941 1.91564 1.91323 1.50368 1.77116 1.21332 0.99057 0.92858 1.01312 1.20843 0.99932 0.97557 0.93383 1.21128 0.96814 0.97258 0.95204 1.15617 1.02441 0.95288 0.86290 1.25338 0.93966 0.94201 0.92572 1.81132 1.07836 1.06961 1.11948 0.95918 0.91629 0.91338 0.90940 0.91754 0.95796 0.90578 0.94846 0.92000 0.90871 0.90239 0.91123 0.94320 0.94584 0.92451 0.87888 0.85522 0.84074 0.84136 0.84482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.57 60.07 0.57 0.85 16 2 N -0.55 -7.50 5.02 -251.26 -1.26 -8.76 16 3 C 0.02 0.29 9.32 60.07 0.56 0.85 16 4 C 0.06 0.85 4.96 -3.83 -0.02 0.83 16 5 C -0.13 -2.17 5.46 -26.73 -0.15 -2.32 16 6 C 0.12 2.29 5.41 -4.04 -0.02 2.27 16 7 N -0.59 -12.43 2.46 -175.07 -0.43 -12.86 16 8 C 0.24 5.57 4.97 -5.20 -0.03 5.54 16 9 C -0.54 -13.84 9.28 -34.44 -0.32 -14.16 16 10 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 11 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -24.39 13.29 55.43 0.74 -23.65 16 13 Si 0.90 20.39 29.54 -169.99 -5.02 15.36 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 C 0.52 10.86 7.67 -10.99 -0.08 10.77 16 18 O -0.57 -12.45 15.61 5.56 0.09 -12.37 16 19 C -0.11 -2.06 3.80 -29.04 -0.11 -2.17 16 20 C -0.04 -0.61 4.41 -104.13 -0.46 -1.07 16 21 C 0.11 1.65 7.23 -39.48 -0.29 1.36 16 22 F -0.13 -2.05 16.47 2.25 0.04 -2.02 16 23 C -0.13 -1.32 10.02 -39.43 -0.39 -1.71 16 24 C -0.10 -0.84 10.03 -39.65 -0.40 -1.24 16 25 C -0.08 -0.83 9.75 -39.17 -0.38 -1.22 16 26 C 0.01 0.10 5.73 -106.94 -0.61 -0.52 16 27 C 0.25 3.99 13.79 -22.56 -0.31 3.68 16 28 N -0.40 -7.06 18.52 41.73 0.77 -6.29 16 29 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.64 8.12 -51.93 -0.42 0.21 16 31 H 0.07 0.71 8.12 -51.93 -0.42 0.28 16 32 H 0.07 1.02 6.47 -51.93 -0.34 0.68 16 33 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 34 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 1.03 8.06 -51.93 -0.42 0.61 16 36 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 37 H 0.06 1.12 6.55 -51.93 -0.34 0.78 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 40 H 0.07 1.32 7.42 -51.93 -0.39 0.93 16 41 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 42 H 0.04 0.88 6.44 -51.93 -0.33 0.55 16 43 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.10 1.89 6.34 -51.93 -0.33 1.56 16 45 H 0.13 2.45 7.50 -51.93 -0.39 2.06 16 46 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 47 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 48 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 411.22 15.07 6.20 6.20 Total: -1.00 -30.59 411.22 -8.56 -39.15 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.14 Total: 1.83 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -2.53 Total: 3.41 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.18 Total: -51.56 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.09 Total: -12.37 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.59 -8.56 -39.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351543434.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.020 kcal (2) G-P(sol) polarization free energy of solvation -30.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds