Wall clock time and date at job start Wed Apr 1 2020 05:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99956 * 2 1 4 4 C 1.46895 * 111.00082 * 123.95676 * 2 1 3 5 5 C 1.52997 * 109.47482 * 169.99957 * 4 2 1 6 6 C 1.52998 * 109.47670 * 179.97438 * 5 4 2 7 7 N 1.46498 * 109.47252 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00170 * 270.00102 * 7 6 5 9 9 C 1.50696 * 109.47100 * 270.00080 * 8 7 6 10 10 H 1.08003 * 120.00325 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00113 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00118 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00289 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46910 * 89.99974 * 13 11 9 15 15 H 1.48495 * 109.47423 * 209.99868 * 13 11 9 16 16 H 1.48502 * 109.47144 * 329.99903 * 13 11 9 17 17 C 1.34775 * 119.99416 * 90.00555 * 7 6 5 18 18 O 1.21277 * 120.00502 * 359.97438 * 17 7 6 19 19 C 1.50702 * 119.99774 * 179.97438 * 17 7 6 20 20 C 1.50695 * 109.47433 * 179.97438 * 19 17 7 21 21 C 1.38205 * 120.09117 * 89.99873 * 20 19 17 22 22 F 1.35099 * 119.94568 * 359.72633 * 21 20 19 23 23 C 1.38555 * 120.09903 * 179.70702 * 21 20 19 24 24 C 1.38345 * 120.28149 * 0.02562 * 23 21 20 25 25 C 1.37933 * 120.17854 * 0.02562 * 24 23 21 26 26 C 1.39588 * 120.09297 * 269.72790 * 20 19 17 27 27 C 1.43196 * 120.13479 * 0.24699 * 26 20 19 28 28 N 6.83360 * 169.32867 * 350.20454 * 2 1 3 29 29 H 1.08998 * 109.47127 * 296.04444 * 1 2 3 30 30 H 1.09004 * 109.47097 * 56.04166 * 1 2 3 31 31 H 1.09001 * 109.47182 * 176.04337 * 1 2 3 32 32 H 1.08998 * 109.47091 * 183.95003 * 3 2 1 33 33 H 1.09001 * 109.47360 * 303.95838 * 3 2 1 34 34 H 1.09004 * 109.46882 * 63.95531 * 3 2 1 35 35 H 1.09002 * 109.47432 * 49.99685 * 4 2 1 36 36 H 1.09001 * 109.47064 * 290.00086 * 4 2 1 37 37 H 1.09002 * 109.47009 * 59.99469 * 5 4 2 38 38 H 1.09001 * 109.47076 * 300.00122 * 5 4 2 39 39 H 1.09002 * 109.46736 * 59.99935 * 6 5 4 40 40 H 1.09001 * 109.47080 * 300.00254 * 6 5 4 41 41 H 1.08996 * 109.47182 * 30.00131 * 8 7 6 42 42 H 1.08999 * 109.46792 * 150.00126 * 8 7 6 43 43 H 0.96991 * 120.00589 * 180.02562 * 12 11 9 44 44 H 1.09001 * 109.47143 * 59.99842 * 19 17 7 45 45 H 1.09000 * 109.46930 * 300.00135 * 19 17 7 46 46 H 1.08007 * 119.85576 * 180.02562 * 23 21 20 47 47 H 1.07996 * 119.90805 * 180.02562 * 24 23 21 48 48 H 1.08006 * 120.04530 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5044 -0.9554 0.9703 6 6 4.0529 -1.7527 2.1554 7 7 5.4977 -1.9345 1.9949 8 6 6.0139 -3.1062 1.2829 9 6 6.2357 -4.2309 2.2611 10 1 6.0147 -4.0872 3.3084 11 6 6.7218 -5.4431 1.8192 12 7 6.9915 -5.6180 0.5439 13 14 6.9961 -6.8375 3.0315 14 1 5.7594 -7.6530 3.1359 15 1 8.1142 -7.6924 2.5581 16 1 7.3326 -6.2757 4.3643 17 6 6.3518 -1.0238 2.5023 18 8 5.9245 -0.0537 3.0914 19 6 7.8381 -1.2111 2.3378 20 6 8.5643 -0.0628 2.9896 21 6 8.9356 -0.1426 4.3185 22 9 8.6421 -1.2494 5.0354 23 6 9.6087 0.9106 4.9163 24 6 9.9126 2.0472 4.1885 25 6 9.5466 2.1396 2.8619 26 6 8.8690 1.0821 2.2515 27 6 8.4879 1.1718 0.8740 28 7 8.1844 1.2470 -0.2153 29 1 -0.3633 0.4512 0.9233 30 1 -0.3633 0.5741 -0.8524 31 1 -0.3633 -1.0252 -0.0709 32 1 3.0828 1.3433 -0.0708 33 1 1.5898 1.9164 -0.8524 34 1 1.7044 1.8723 0.9234 35 1 1.5090 -1.7407 1.1756 36 1 1.7975 -0.2248 2.0627 37 1 3.9909 0.0193 0.9322 38 1 3.7024 -1.4966 0.0451 39 1 3.5664 -2.7274 2.1938 40 1 3.8550 -1.2111 3.0804 41 1 5.2934 -3.4187 0.5272 42 1 6.9582 -2.8518 0.8015 43 1 7.3331 -6.4708 0.2329 44 1 8.0852 -1.2413 1.2766 45 1 8.1406 -2.1467 2.8081 46 1 9.8974 0.8439 5.9550 47 1 10.4379 2.8644 4.6605 48 1 9.7846 3.0281 2.2958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351543434.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:18 Heat of formation + Delta-G solvation = -42.250427 kcal Electronic energy + Delta-G solvation = -30763.456273 eV Core-core repulsion = 26539.317072 eV Total energy + Delta-G solvation = -4224.139201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -49.92016 -41.27667 -40.07213 -38.69137 -37.58481 -36.92484 -34.89581 -34.16030 -32.92785 -31.94225 -29.32595 -29.21250 -28.55280 -26.93092 -25.09587 -24.93729 -23.98095 -22.79159 -21.85226 -20.37843 -19.85000 -18.66983 -18.15753 -17.95933 -17.48793 -17.05560 -16.69165 -16.62112 -16.54950 -16.33443 -16.23347 -15.83052 -15.55150 -15.13814 -14.94641 -14.85238 -14.54991 -14.43110 -14.31874 -14.12056 -13.69761 -13.67909 -13.52891 -13.32588 -13.20703 -12.98167 -12.97403 -12.90054 -12.69976 -12.61068 -12.59973 -12.44314 -12.40424 -12.21854 -12.01830 -11.74065 -11.59832 -10.95062 -10.62368 -9.98098 -9.70956 -9.55675 -9.37502 -8.23432 -6.39322 -0.37659 0.11533 1.40536 1.42103 1.49610 1.52134 1.62204 1.81738 2.17126 2.40731 2.64218 2.77489 2.98796 3.06909 3.33207 3.47004 3.66814 3.72206 3.91460 3.97727 4.03941 4.16147 4.26571 4.33250 4.36730 4.37356 4.44332 4.52018 4.54308 4.60368 4.61579 4.68864 4.73563 4.83730 4.91787 4.94560 4.97374 5.05101 5.09816 5.12202 5.20904 5.22481 5.24685 5.60185 5.75585 5.79484 5.98118 5.99971 6.06871 6.31322 6.46789 6.74417 7.18606 7.34645 8.82661 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.005876 B = 0.004861 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4763.786926 B = 5758.576812 C = 9175.383031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.566 5.566 3 C 0.025 3.975 4 C 0.068 3.932 5 C -0.113 4.113 6 C 0.122 3.878 7 N -0.597 5.597 8 C 0.254 3.746 9 C -0.547 4.547 10 H 0.055 0.945 11 C 0.023 3.977 12 N -0.920 5.920 13 Si 0.958 3.042 14 H -0.273 1.273 15 H -0.279 1.279 16 H -0.269 1.269 17 C 0.519 3.481 18 O -0.579 6.579 19 C -0.103 4.103 20 C -0.066 4.066 21 C 0.084 3.916 22 F -0.146 7.146 23 C -0.110 4.110 24 C -0.076 4.076 25 C -0.065 4.065 26 C -0.015 4.015 27 C 0.270 3.730 28 N -0.450 5.450 29 H 0.031 0.969 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.029 0.971 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.045 0.955 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.021 0.979 42 H 0.022 0.978 43 H 0.269 0.731 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.173 0.827 47 H 0.194 0.806 48 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.207 15.820 7.162 17.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.290 5.290 3 C -0.123 4.123 4 C -0.061 4.061 5 C -0.152 4.152 6 C -0.001 4.001 7 N -0.327 5.327 8 C 0.133 3.867 9 C -0.585 4.585 10 H 0.073 0.927 11 C -0.178 4.178 12 N -0.559 5.559 13 Si 0.783 3.217 14 H -0.198 1.198 15 H -0.205 1.205 16 H -0.193 1.193 17 C 0.308 3.692 18 O -0.461 6.461 19 C -0.143 4.143 20 C -0.070 4.070 21 C 0.065 3.935 22 F -0.125 7.125 23 C -0.129 4.129 24 C -0.093 4.093 25 C -0.085 4.085 26 C -0.018 4.018 27 C -0.044 4.044 28 N -0.125 5.125 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.048 0.952 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.078 0.922 44 H 0.110 0.890 45 H 0.127 0.873 46 H 0.191 0.809 47 H 0.211 0.789 48 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.694 16.001 5.207 16.841 hybrid contribution -0.239 -1.403 1.191 1.856 sum 0.455 14.598 6.398 15.945 Atomic orbital electron populations 1.22429 0.85620 1.02970 1.01184 1.61941 1.09397 1.14329 1.43363 1.22397 1.00225 0.88633 1.01074 1.21949 0.93762 0.98871 0.91491 1.21749 0.95862 0.99409 0.98218 1.21322 0.79906 1.00566 0.98294 1.48180 1.06496 1.23430 1.54550 1.19076 0.94166 0.81829 0.91631 1.21621 1.44675 0.97547 0.94674 0.92670 1.25676 0.94554 1.00756 0.96785 1.70021 1.44622 1.25952 1.15325 0.85551 0.78082 0.78910 0.79190 1.19826 1.20473 1.19349 1.20395 0.88811 0.81950 0.78073 1.90571 1.79801 1.31196 1.44557 1.20561 0.92025 0.99152 1.02567 1.19438 0.98913 0.95051 0.93588 1.17653 1.01624 0.85601 0.88631 1.91503 1.91846 1.51755 1.77404 1.21790 0.96652 0.91645 1.02811 1.21465 0.97817 0.97752 0.92272 1.21619 0.94204 0.96642 0.96073 1.15804 1.04463 0.96294 0.85258 1.25770 0.92790 0.92934 0.92931 1.81126 1.09579 1.08500 1.13341 0.95065 0.90217 0.90799 0.93071 0.89955 0.95223 0.89671 0.94276 0.93576 0.92689 0.90111 0.91017 0.96133 0.96030 0.92227 0.88965 0.87335 0.80914 0.78862 0.81089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.57 127.69 1.22 1.74 16 2 N -0.57 -15.19 5.02 -948.84 -4.76 -19.96 16 3 C 0.02 0.63 9.32 127.69 1.19 1.82 16 4 C 0.07 1.93 4.96 86.30 0.43 2.36 16 5 C -0.11 -3.99 5.46 30.59 0.17 -3.82 16 6 C 0.12 4.74 5.41 86.38 0.47 5.21 16 7 N -0.60 -26.64 2.46 -826.18 -2.03 -28.67 16 8 C 0.25 12.73 4.97 85.63 0.43 13.16 16 9 C -0.55 -29.05 9.28 25.60 0.24 -28.82 16 10 H 0.06 2.97 7.81 -2.91 -0.02 2.94 16 11 C 0.02 1.22 5.46 84.65 0.46 1.68 16 12 N -0.92 -51.78 13.29 21.45 0.28 -51.50 16 13 Si 0.96 42.27 29.54 68.60 2.03 44.30 16 14 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 15 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 17 C 0.52 22.69 7.67 87.66 0.67 23.37 16 18 O -0.58 -26.23 15.61 -3.02 -0.05 -26.28 16 19 C -0.10 -4.09 3.80 29.10 0.11 -3.98 16 20 C -0.07 -2.11 4.41 -19.55 -0.09 -2.20 16 21 C 0.08 2.38 7.23 22.34 0.16 2.54 16 22 F -0.15 -4.91 16.47 44.97 0.74 -4.17 16 23 C -0.11 -1.90 10.02 22.37 0.22 -1.67 16 24 C -0.08 -0.89 10.03 22.22 0.22 -0.67 16 25 C -0.07 -1.06 9.75 22.54 0.22 -0.84 16 26 C -0.01 -0.40 5.73 -21.37 -0.12 -0.52 16 27 C 0.27 8.69 13.79 88.36 1.22 9.90 16 28 N -0.45 -16.41 18.52 18.97 0.35 -16.06 16 29 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 1.38 8.12 -2.39 -0.02 1.36 16 31 H 0.07 1.41 8.12 -2.39 -0.02 1.39 16 32 H 0.05 1.49 6.47 -2.39 -0.02 1.47 16 33 H 0.08 1.74 8.12 -2.39 -0.02 1.72 16 34 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.08 2.26 8.06 -2.39 -0.02 2.24 16 36 H 0.04 1.07 8.12 -2.39 -0.02 1.05 16 37 H 0.05 1.76 6.55 -2.39 -0.02 1.74 16 38 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.08 3.07 8.07 -2.39 -0.02 3.05 16 40 H 0.07 2.75 7.42 -2.39 -0.02 2.74 16 41 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 42 H 0.02 1.14 6.44 -2.39 -0.02 1.13 16 43 H 0.27 14.29 8.31 -92.72 -0.77 13.52 16 44 H 0.09 3.72 6.34 -2.39 -0.02 3.71 16 45 H 0.11 4.58 7.50 -2.39 -0.02 4.56 16 46 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 47 H 0.19 0.40 8.06 -2.91 -0.02 0.37 16 48 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -70.24 411.22 4.75 -65.49 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.97 Total: 17.58 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 7.22 Total: 19.26 kcal Atomic # 7 Polarization: -110.02 SS G_CDS: -6.15 Total: -116.18 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.05 Total: -26.28 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.74 Total: -4.17 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -70.24 4.75 -65.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351543434.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.237 kcal (2) G-P(sol) polarization free energy of solvation -70.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds