Wall clock time and date at job start Wed Apr 1 2020 05:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35894 * 116.99744 * 2 1 4 4 C 1.38678 * 119.99918 * 0.02562 * 3 2 1 5 5 C 1.38676 * 120.01640 * 179.97438 * 4 3 2 6 6 O 1.35907 * 119.99078 * 179.97438 * 5 4 3 7 7 C 1.42895 * 116.99798 * 0.02562 * 6 5 4 8 8 C 1.38658 * 120.01641 * 359.97438 * 5 4 3 9 9 C 1.38761 * 119.98679 * 0.02562 * 8 5 4 10 10 N 1.40261 * 120.00993 * 179.97438 * 9 8 5 11 11 N 1.40601 * 127.39024 * 222.17465 * 10 9 8 12 12 N 1.28949 * 106.65561 * 180.02562 * 11 10 9 13 13 N 1.28430 * 110.20199 * 359.97438 * 12 11 10 14 14 C 1.30744 * 110.64411 * 0.02562 * 13 12 11 15 15 C 1.50695 * 126.35870 * 179.73503 * 14 13 12 16 16 N 1.46904 * 109.46917 * 85.98218 * 15 14 13 17 17 C 1.46898 * 110.99927 * 293.95226 * 16 15 14 18 18 C 1.46900 * 110.99677 * 169.99788 * 16 15 14 19 19 C 1.53001 * 109.47018 * 189.99881 * 18 16 15 20 20 C 1.50694 * 109.47171 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00441 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99944 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00083 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00050 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47106 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47142 * 119.99797 * 24 22 20 27 27 H 1.48497 * 109.47081 * 240.00059 * 24 22 20 28 28 C 1.38668 * 119.99111 * 180.25144 * 3 2 1 29 29 H 1.09003 * 109.47298 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47085 * 299.99875 * 1 2 3 31 31 H 1.09005 * 109.47400 * 59.99934 * 1 2 3 32 32 H 1.07999 * 119.98982 * 0.02562 * 4 3 2 33 33 H 1.09001 * 109.47124 * 60.00034 * 7 6 5 34 34 H 1.08997 * 109.47225 * 179.97438 * 7 6 5 35 35 H 1.09002 * 109.47388 * 300.00264 * 7 6 5 36 36 H 1.07995 * 120.00763 * 179.97438 * 8 5 4 37 37 H 1.08998 * 109.47092 * 205.98019 * 15 14 13 38 38 H 1.08997 * 109.47711 * 325.98416 * 15 14 13 39 39 H 1.08990 * 109.47339 * 60.00076 * 17 16 15 40 40 H 1.09002 * 109.46607 * 180.02562 * 17 16 15 41 41 H 1.09003 * 109.47249 * 299.99657 * 17 16 15 42 42 H 1.08998 * 109.47521 * 309.99922 * 18 16 15 43 43 H 1.08998 * 109.47398 * 69.99978 * 18 16 15 44 44 H 1.08998 * 109.47008 * 300.00355 * 19 18 16 45 45 H 1.09001 * 109.47008 * 60.00348 * 19 18 16 46 46 H 0.97007 * 120.00017 * 179.97438 * 23 22 20 47 47 H 1.07999 * 120.00790 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2905 2.3739 0.0005 5 6 1.9197 3.6097 0.0011 6 8 1.1789 4.7491 0.0011 7 6 -0.2422 4.5990 0.0011 8 6 3.3043 3.6831 0.0016 9 6 4.0605 2.5197 0.0011 10 7 5.4612 2.5934 0.0011 11 7 6.3573 1.8119 -0.7493 12 7 7.5438 2.2126 -0.4422 13 7 7.4819 3.1622 0.4203 14 6 6.2384 3.4303 0.7221 15 6 5.7612 4.4749 1.6979 16 7 5.6514 5.7702 1.0138 17 6 6.9725 6.2590 0.5969 18 6 4.9683 6.7568 1.8612 19 6 4.6506 8.0052 1.0357 20 6 3.9494 9.0171 1.9047 21 1 3.7505 8.7925 2.9422 22 6 3.5616 10.2297 1.3754 23 7 3.8041 10.5035 0.1122 24 14 2.6929 11.4843 2.4528 25 1 2.5420 10.9380 3.8255 26 1 3.4946 12.7332 2.5030 27 1 1.3521 11.7791 1.8867 28 6 3.4307 1.2833 -0.0053 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.2120 2.3171 0.0014 33 1 -0.5495 4.0498 0.8911 34 1 -0.7115 5.5828 0.0015 35 1 -0.5495 4.0498 -0.8889 36 1 3.7941 4.6456 0.0016 37 1 4.7856 4.1872 2.0899 38 1 6.4729 4.5570 2.5193 39 1 7.4269 5.5409 -0.0854 40 1 6.8622 7.2195 0.0936 41 1 7.6086 6.3798 1.4739 42 1 4.0417 6.3283 2.2431 43 1 5.6144 7.0280 2.6961 44 1 5.5772 8.4337 0.6538 45 1 4.0045 7.7340 0.2008 46 1 3.5310 11.3565 -0.2604 47 1 4.0189 0.3775 -0.0098 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361826264.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:49 Heat of formation + Delta-G solvation = 88.519096 kcal Electronic energy + Delta-G solvation = -31021.069468 eV Core-core repulsion = 26822.520821 eV Total energy + Delta-G solvation = -4198.548647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.21253 -40.88414 -39.12904 -37.82235 -37.33078 -34.43809 -33.36413 -32.35443 -30.72113 -30.12587 -29.68938 -28.30521 -27.69377 -26.93056 -25.74766 -24.54252 -23.34585 -22.75573 -22.00070 -20.99827 -20.04963 -19.38369 -17.40201 -17.01741 -16.92280 -16.49908 -16.32455 -16.29164 -15.93102 -15.75155 -15.35317 -15.06510 -14.96167 -14.63973 -14.43784 -13.86142 -13.56427 -13.26954 -13.11538 -12.81536 -12.74988 -12.49669 -12.31153 -12.20516 -11.93271 -11.81232 -11.71643 -11.67143 -11.40799 -11.23248 -11.12984 -10.98227 -10.94410 -10.61348 -10.48914 -10.30124 -9.93597 -9.50606 -9.16255 -8.92491 -8.37414 -8.37211 -8.05405 -6.02947 -4.05456 0.29826 1.08812 1.24241 1.62715 2.24161 2.82337 3.04767 3.25344 3.28034 3.36005 3.39051 3.82590 4.31965 4.37752 4.46489 4.49072 4.51376 4.66215 4.72312 4.76110 4.81000 4.89507 4.93583 4.94783 5.05893 5.27732 5.33330 5.34889 5.37618 5.42161 5.44459 5.68847 5.73043 5.78809 5.90070 5.92681 6.13129 6.19109 6.32528 6.45943 6.48845 6.79100 6.82534 7.16142 7.23788 7.27364 7.70066 7.81990 8.01476 8.37312 8.41664 9.01472 9.58259 11.08283 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008887 B = 0.003666 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3149.737130 B = 7635.396881 C =10346.399838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.178 3.822 4 C -0.287 4.287 5 C 0.191 3.809 6 O -0.292 6.292 7 C 0.025 3.975 8 C -0.173 4.173 9 C 0.201 3.799 10 N -0.325 5.325 11 N -0.079 5.079 12 N -0.037 5.037 13 N -0.327 5.327 14 C 0.281 3.719 15 C 0.119 3.881 16 N -0.538 5.538 17 C 0.021 3.979 18 C 0.063 3.937 19 C 0.029 3.971 20 C -0.520 4.520 21 H 0.055 0.945 22 C 0.060 3.940 23 N -0.891 5.891 24 Si 0.890 3.110 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.284 1.284 28 C -0.170 4.170 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.143 0.857 33 H 0.056 0.944 34 H 0.108 0.892 35 H 0.055 0.945 36 H 0.172 0.828 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.030 0.970 42 H 0.065 0.935 43 H 0.029 0.971 44 H 0.019 0.981 45 H 0.026 0.974 46 H 0.260 0.740 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.705 -19.385 1.140 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.222 6.222 3 C 0.131 3.869 4 C -0.307 4.307 5 C 0.143 3.857 6 O -0.204 6.204 7 C -0.070 4.070 8 C -0.194 4.194 9 C 0.109 3.891 10 N -0.116 5.116 11 N -0.063 5.063 12 N -0.032 5.032 13 N -0.178 5.178 14 C 0.005 3.995 15 C -0.012 4.012 16 N -0.264 5.264 17 C -0.127 4.127 18 C -0.062 4.062 19 C -0.008 4.008 20 C -0.559 4.559 21 H 0.073 0.927 22 C -0.142 4.142 23 N -0.530 5.530 24 Si 0.719 3.281 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.210 1.210 28 C -0.191 4.191 29 H 0.122 0.878 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.160 0.840 33 H 0.075 0.925 34 H 0.126 0.874 35 H 0.074 0.926 36 H 0.189 0.811 37 H 0.121 0.879 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.048 0.952 42 H 0.084 0.916 43 H 0.047 0.953 44 H 0.037 0.963 45 H 0.045 0.955 46 H 0.070 0.930 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.783 -20.017 -0.098 21.477 hybrid contribution -1.312 1.128 1.423 2.240 sum -9.095 -18.889 1.325 21.006 Atomic orbital electron populations 1.23135 0.77869 1.04335 1.01625 1.86097 1.21752 1.26114 1.88242 1.18187 0.90955 0.83987 0.93773 1.21444 1.01083 0.91757 1.16422 1.18285 0.90361 0.84967 0.92090 1.86297 1.19189 1.27607 1.87258 1.23171 0.78134 1.04703 1.00982 1.20610 0.91299 0.99639 1.07886 1.16493 0.77222 0.93450 1.01972 1.48706 1.06491 1.26454 1.29938 1.82678 0.93603 1.15540 1.14528 1.78013 1.13641 1.04909 1.06636 1.74512 1.16575 1.12699 1.13989 1.25914 0.86558 0.93015 0.94061 1.20804 1.02180 0.87302 0.90929 1.62160 1.21001 1.01587 1.41604 1.22506 0.88302 1.01847 1.00070 1.22451 0.96292 0.92998 0.94500 1.19106 0.97129 0.89251 0.95344 1.21166 1.37896 1.00180 0.96700 0.92700 1.24972 0.96046 0.98249 0.94931 1.69979 1.47099 1.23349 1.12572 0.86566 0.79385 0.81497 0.80702 1.19773 1.21069 1.21047 1.19902 0.91897 0.96994 1.10350 0.87848 0.92348 0.92360 0.83981 0.92550 0.87360 0.92640 0.81100 0.87904 0.90191 0.92014 0.89696 0.95170 0.91605 0.95263 0.96254 0.95519 0.93041 0.83923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.91 10.49 -19.41 -0.20 -3.11 16 3 C 0.18 1.90 6.68 -39.26 -0.26 1.64 16 4 C -0.29 -2.87 8.02 -39.26 -0.31 -3.19 16 5 C 0.19 2.39 6.68 -39.26 -0.26 2.13 16 6 O -0.29 -3.87 10.49 -19.45 -0.20 -4.07 16 7 C 0.03 0.21 9.81 101.05 0.99 1.20 16 8 C -0.17 -2.43 8.40 -39.23 -0.33 -2.76 16 9 C 0.20 2.73 6.17 -83.61 -0.52 2.22 16 10 N -0.32 -4.91 3.74 -7.99 -0.03 -4.94 16 11 N -0.08 -1.29 13.82 60.35 0.83 -0.46 16 12 N -0.04 -0.64 13.39 60.35 0.81 0.17 16 13 N -0.33 -5.43 11.21 32.75 0.37 -5.07 16 14 C 0.28 4.29 6.68 -155.19 -1.04 3.26 16 15 C 0.12 1.66 4.45 -4.98 -0.02 1.64 16 16 N -0.54 -9.00 3.57 -244.38 -0.87 -9.87 16 17 C 0.02 0.35 9.16 60.06 0.55 0.90 16 18 C 0.06 1.21 4.90 -3.82 -0.02 1.19 16 19 C 0.03 0.71 4.90 -27.89 -0.14 0.57 16 20 C -0.52 -13.99 9.11 -34.44 -0.31 -14.30 16 21 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 22 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 23 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 24 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 C -0.17 -2.06 9.82 -39.23 -0.39 -2.45 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 31 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 32 H 0.14 1.01 4.52 -52.49 -0.24 0.77 16 33 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 34 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 36 H 0.17 2.77 6.12 -52.49 -0.32 2.45 16 37 H 0.10 1.28 6.90 -51.93 -0.36 0.92 16 38 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 39 H 0.06 1.03 6.58 -51.93 -0.34 0.69 16 40 H 0.08 1.57 6.30 -51.93 -0.33 1.24 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 43 H 0.03 0.55 8.12 -51.93 -0.42 0.12 16 44 H 0.02 0.50 6.47 -51.93 -0.34 0.17 16 45 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 47 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 389.26 15.07 5.87 5.87 Total: -1.00 -32.03 389.26 -5.30 -37.33 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -6.42 Total: -1.19 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -1.16 Total: -5.28 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 1.84 Total: -45.44 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.41 Total: -7.19 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.03 -5.30 -37.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361826264.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.850 kcal (2) G-P(sol) polarization free energy of solvation -32.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds