Wall clock time and date at job start Wed Apr 1 2020 05:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35894 * 116.99744 * 2 1 4 4 C 1.38678 * 119.99918 * 0.02562 * 3 2 1 5 5 C 1.38676 * 120.01640 * 179.97438 * 4 3 2 6 6 O 1.35907 * 119.99078 * 179.97438 * 5 4 3 7 7 C 1.42895 * 116.99798 * 0.02562 * 6 5 4 8 8 C 1.38658 * 120.01641 * 359.97438 * 5 4 3 9 9 C 1.38761 * 119.98679 * 0.02562 * 8 5 4 10 10 N 1.40261 * 120.00993 * 179.97438 * 9 8 5 11 11 N 1.40601 * 127.39024 * 222.17465 * 10 9 8 12 12 N 1.28949 * 106.65561 * 180.02562 * 11 10 9 13 13 N 1.28430 * 110.20199 * 359.97438 * 12 11 10 14 14 C 1.30744 * 110.64411 * 0.02562 * 13 12 11 15 15 C 1.50695 * 126.35870 * 179.73503 * 14 13 12 16 16 N 1.46904 * 109.46917 * 85.98218 * 15 14 13 17 17 C 1.46898 * 110.99927 * 293.95226 * 16 15 14 18 18 C 1.46900 * 110.99677 * 169.99788 * 16 15 14 19 19 C 1.53001 * 109.47018 * 189.99881 * 18 16 15 20 20 C 1.50694 * 109.47171 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00441 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99944 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00083 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00050 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47106 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47142 * 119.99797 * 24 22 20 27 27 H 1.48497 * 109.47081 * 240.00059 * 24 22 20 28 28 C 1.38668 * 119.99111 * 180.25144 * 3 2 1 29 29 H 1.09003 * 109.47298 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47085 * 299.99875 * 1 2 3 31 31 H 1.09005 * 109.47400 * 59.99934 * 1 2 3 32 32 H 1.07999 * 119.98982 * 0.02562 * 4 3 2 33 33 H 1.09001 * 109.47124 * 60.00034 * 7 6 5 34 34 H 1.08997 * 109.47225 * 179.97438 * 7 6 5 35 35 H 1.09002 * 109.47388 * 300.00264 * 7 6 5 36 36 H 1.07995 * 120.00763 * 179.97438 * 8 5 4 37 37 H 1.08998 * 109.47092 * 205.98019 * 15 14 13 38 38 H 1.08997 * 109.47711 * 325.98416 * 15 14 13 39 39 H 1.08990 * 109.47339 * 60.00076 * 17 16 15 40 40 H 1.09002 * 109.46607 * 180.02562 * 17 16 15 41 41 H 1.09003 * 109.47249 * 299.99657 * 17 16 15 42 42 H 1.08998 * 109.47521 * 309.99922 * 18 16 15 43 43 H 1.08998 * 109.47398 * 69.99978 * 18 16 15 44 44 H 1.08998 * 109.47008 * 300.00355 * 19 18 16 45 45 H 1.09001 * 109.47008 * 60.00348 * 19 18 16 46 46 H 0.97007 * 120.00017 * 179.97438 * 23 22 20 47 47 H 1.07999 * 120.00790 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2905 2.3739 0.0005 5 6 1.9197 3.6097 0.0011 6 8 1.1789 4.7491 0.0011 7 6 -0.2422 4.5990 0.0011 8 6 3.3043 3.6831 0.0016 9 6 4.0605 2.5197 0.0011 10 7 5.4612 2.5934 0.0011 11 7 6.3573 1.8119 -0.7493 12 7 7.5438 2.2126 -0.4422 13 7 7.4819 3.1622 0.4203 14 6 6.2384 3.4303 0.7221 15 6 5.7612 4.4749 1.6979 16 7 5.6514 5.7702 1.0138 17 6 6.9725 6.2590 0.5969 18 6 4.9683 6.7568 1.8612 19 6 4.6506 8.0052 1.0357 20 6 3.9494 9.0171 1.9047 21 1 3.7505 8.7925 2.9422 22 6 3.5616 10.2297 1.3754 23 7 3.8041 10.5035 0.1122 24 14 2.6929 11.4843 2.4528 25 1 2.5420 10.9380 3.8255 26 1 3.4946 12.7332 2.5030 27 1 1.3521 11.7791 1.8867 28 6 3.4307 1.2833 -0.0053 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.2120 2.3171 0.0014 33 1 -0.5495 4.0498 0.8911 34 1 -0.7115 5.5828 0.0015 35 1 -0.5495 4.0498 -0.8889 36 1 3.7941 4.6456 0.0016 37 1 4.7856 4.1872 2.0899 38 1 6.4729 4.5570 2.5193 39 1 7.4269 5.5409 -0.0854 40 1 6.8622 7.2195 0.0936 41 1 7.6086 6.3798 1.4739 42 1 4.0417 6.3283 2.2431 43 1 5.6144 7.0280 2.6961 44 1 5.5772 8.4337 0.6538 45 1 4.0045 7.7340 0.2008 46 1 3.5310 11.3565 -0.2604 47 1 4.0189 0.3775 -0.0098 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361826264.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:47 Heat of formation + Delta-G solvation = 67.249213 kcal Electronic energy + Delta-G solvation = -31021.991799 eV Core-core repulsion = 26822.520821 eV Total energy + Delta-G solvation = -4199.470979 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.43822 -41.74068 -39.91060 -39.04657 -38.46114 -35.56931 -35.17883 -33.81994 -31.62289 -31.56890 -30.93584 -29.13873 -28.77170 -27.57466 -27.41569 -25.80487 -24.79502 -23.88934 -23.04464 -22.21131 -21.63144 -20.30084 -18.62023 -18.25695 -17.95233 -17.85679 -17.32100 -17.02824 -16.93058 -16.73746 -16.44654 -16.36639 -16.28258 -16.06691 -15.67654 -15.06037 -14.55099 -14.50014 -14.38247 -14.16931 -13.86516 -13.72810 -13.41923 -13.35436 -13.23591 -12.90232 -12.79912 -12.73119 -12.56926 -12.50511 -12.39580 -12.37273 -12.24506 -12.17977 -11.81275 -11.60715 -11.38339 -11.31171 -11.17698 -10.48970 -9.82068 -9.41606 -9.27901 -8.14160 -6.24217 -0.77819 0.14678 0.17615 0.52327 0.98056 1.43781 1.44917 1.57219 2.12958 2.20677 2.34387 2.44087 2.66207 3.06862 3.20496 3.25050 3.63634 3.71711 3.78860 3.82815 3.89866 4.07449 4.18864 4.24319 4.28003 4.33893 4.36386 4.39325 4.41603 4.41916 4.50460 4.67140 4.69941 4.74993 4.77312 4.78622 4.94119 4.99623 5.01829 5.10023 5.14257 5.43097 5.51492 5.65972 5.78919 5.98422 6.07034 6.08471 6.32418 6.35949 6.93558 7.16418 7.44606 8.98045 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008887 B = 0.003666 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3149.737130 B = 7635.396881 C =10346.399838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.186 3.814 4 C -0.268 4.268 5 C 0.185 3.815 6 O -0.326 6.326 7 C 0.013 3.987 8 C -0.191 4.191 9 C 0.187 3.813 10 N -0.319 5.319 11 N -0.087 5.087 12 N -0.052 5.052 13 N -0.339 5.339 14 C 0.280 3.720 15 C 0.125 3.875 16 N -0.547 5.547 17 C 0.029 3.971 18 C 0.083 3.917 19 C 0.037 3.963 20 C -0.535 4.535 21 H 0.065 0.935 22 C 0.002 3.998 23 N -0.932 5.932 24 Si 0.962 3.038 25 H -0.258 1.258 26 H -0.284 1.284 27 H -0.280 1.280 28 C -0.174 4.174 29 H 0.124 0.876 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.176 0.824 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.146 0.854 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.044 0.956 42 H 0.077 0.923 43 H 0.038 0.962 44 H -0.006 1.006 45 H -0.008 1.008 46 H 0.261 0.739 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.090 -20.696 2.847 23.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.139 3.861 4 C -0.288 4.288 5 C 0.138 3.862 6 O -0.238 6.238 7 C -0.081 4.081 8 C -0.212 4.212 9 C 0.096 3.904 10 N -0.110 5.110 11 N -0.072 5.072 12 N -0.047 5.047 13 N -0.190 5.190 14 C 0.003 3.997 15 C -0.005 4.005 16 N -0.272 5.272 17 C -0.119 4.119 18 C -0.043 4.043 19 C 0.000 4.000 20 C -0.573 4.573 21 H 0.083 0.917 22 C -0.196 4.196 23 N -0.573 5.573 24 Si 0.787 3.213 25 H -0.182 1.182 26 H -0.210 1.210 27 H -0.206 1.206 28 C -0.195 4.195 29 H 0.142 0.858 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.193 0.807 33 H 0.098 0.902 34 H 0.128 0.872 35 H 0.094 0.906 36 H 0.163 0.837 37 H 0.138 0.862 38 H 0.119 0.881 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.095 0.905 43 H 0.056 0.944 44 H 0.012 0.988 45 H 0.011 0.989 46 H 0.070 0.930 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.186 -21.355 1.618 23.715 hybrid contribution -0.708 1.441 0.830 1.807 sum -10.895 -19.914 2.448 22.831 Atomic orbital electron populations 1.23531 0.75466 1.06327 1.02932 1.86110 1.24202 1.25216 1.87719 1.18180 0.90503 0.84845 0.92572 1.21656 1.02622 0.90238 1.14258 1.18325 0.89851 0.85795 0.92259 1.86256 1.21610 1.28546 1.87409 1.23495 0.75752 1.05739 1.03110 1.20431 0.92311 0.98566 1.09899 1.16571 0.76337 0.94011 1.03503 1.48778 1.07103 1.25924 1.29212 1.82614 0.93676 1.16065 1.14807 1.77989 1.14064 1.05425 1.07188 1.74453 1.17435 1.12864 1.14267 1.26041 0.86297 0.93232 0.94135 1.20867 1.03794 0.85180 0.90695 1.61947 1.20939 1.02285 1.42039 1.22373 0.88642 1.00488 1.00419 1.22052 0.97281 0.91367 0.93610 1.18911 0.94947 0.91410 0.94755 1.21618 1.37571 1.00778 0.97352 0.91723 1.25905 0.96894 1.00596 0.96195 1.70127 1.48527 1.24024 1.14595 0.85451 0.78014 0.78524 0.79350 1.18214 1.20962 1.20586 1.19961 0.92879 0.96272 1.10340 0.85763 0.90861 0.91109 0.80659 0.90238 0.87196 0.90554 0.83674 0.86190 0.88094 0.92087 0.92210 0.93735 0.90460 0.94384 0.98792 0.98913 0.93020 0.83886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.19 16 2 O -0.32 -5.09 10.49 -92.36 -0.97 -6.06 16 3 C 0.19 3.57 6.68 22.48 0.15 3.72 16 4 C -0.27 -4.66 8.02 22.48 0.18 -4.48 16 5 C 0.19 4.47 6.68 22.47 0.15 4.62 16 6 O -0.33 -8.42 10.49 -92.50 -0.97 -9.39 16 7 C 0.01 0.19 9.81 113.37 1.11 1.30 16 8 C -0.19 -5.39 8.40 22.50 0.19 -5.20 16 9 C 0.19 5.07 6.17 38.04 0.23 5.30 16 10 N -0.32 -9.69 3.74 -179.21 -0.67 -10.36 16 11 N -0.09 -2.87 13.82 37.02 0.51 -2.36 16 12 N -0.05 -1.80 13.39 37.02 0.50 -1.30 16 13 N -0.34 -11.28 11.21 -50.29 -0.56 -11.85 16 14 C 0.28 8.51 6.68 138.05 0.92 9.43 16 15 C 0.13 3.39 4.45 85.55 0.38 3.77 16 16 N -0.55 -18.47 3.57 -927.07 -3.31 -21.78 16 17 C 0.03 0.99 9.16 127.69 1.17 2.16 16 18 C 0.08 3.16 4.90 86.30 0.42 3.58 16 19 C 0.04 1.88 4.90 29.85 0.15 2.03 16 20 C -0.53 -28.95 9.11 25.60 0.23 -28.72 16 21 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 22 C 0.00 0.10 5.46 84.66 0.46 0.57 16 23 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 24 Si 0.96 42.83 29.54 68.60 2.03 44.85 16 25 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 27 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 28 C -0.17 -4.03 9.82 22.50 0.22 -3.81 16 29 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 0.30 7.66 -2.39 -0.02 0.29 16 31 H 0.07 0.33 7.66 -2.38 -0.02 0.31 16 32 H 0.18 1.75 4.52 -2.91 -0.01 1.74 16 33 H 0.08 0.77 7.66 -2.39 -0.02 0.75 16 34 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.08 0.77 7.66 -2.39 -0.02 0.75 16 36 H 0.15 4.89 6.12 -2.91 -0.02 4.87 16 37 H 0.12 2.85 6.90 -2.39 -0.02 2.83 16 38 H 0.10 2.35 8.12 -2.39 -0.02 2.34 16 39 H 0.06 2.09 6.58 -2.39 -0.02 2.08 16 40 H 0.06 2.34 6.30 -2.39 -0.02 2.32 16 41 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.08 2.76 7.93 -2.39 -0.02 2.74 16 43 H 0.04 1.38 8.12 -2.39 -0.02 1.36 16 44 H -0.01 -0.34 6.47 -2.39 -0.02 -0.36 16 45 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 46 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 47 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -71.42 389.26 4.92 -66.49 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 1.00 Total: 11.86 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 7.09 Total: -4.54 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -3.25 Total: -103.22 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -1.94 Total: -15.45 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -71.42 4.92 -66.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361826264.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.742 kcal (2) G-P(sol) polarization free energy of solvation -71.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds