Wall clock time and date at job start Wed Apr 1 2020 06:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35948 * 116.99628 * 2 1 4 4 C 1.38748 * 119.99626 * 359.97438 * 3 2 1 5 5 C 1.38242 * 120.09816 * 179.97438 * 4 3 2 6 6 C 1.38274 * 120.10547 * 359.97438 * 5 4 3 7 7 F 1.35098 * 120.00164 * 180.02562 * 6 5 4 8 8 C 1.39091 * 119.99747 * 0.04181 * 6 5 4 9 9 N 1.39830 * 120.04935 * 179.97438 * 8 6 5 10 10 C 1.46951 * 110.99842 * 243.75349 * 9 8 6 11 11 C 1.53057 * 109.36779 * 176.81476 * 10 9 8 12 12 N 1.46957 * 109.36201 * 58.39959 * 11 10 9 13 13 C 1.46897 * 110.99799 * 176.81235 * 12 11 10 14 14 C 1.52997 * 109.47305 * 189.87934 * 13 12 11 15 15 H 1.09003 * 109.47368 * 303.83105 * 14 13 12 16 16 C 1.47206 * 109.46972 * 63.82495 * 14 13 12 17 17 N 8.30649 * 167.15349 * 162.35037 * 2 1 3 18 18 C 1.52993 * 109.47571 * 183.82764 * 14 13 12 19 19 C 1.50697 * 109.47424 * 175.00077 * 18 14 13 20 20 H 1.07995 * 120.00214 * 359.97438 * 19 18 14 21 21 C 1.37878 * 120.00185 * 179.97438 * 19 18 14 22 22 N 1.31508 * 120.00497 * 179.97438 * 21 19 18 23 23 Si 1.86808 * 120.00011 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47093 * 89.99956 * 23 21 19 25 25 H 1.48498 * 109.47309 * 209.99855 * 23 21 19 26 26 H 1.48496 * 109.46965 * 329.99940 * 23 21 19 27 27 C 1.46951 * 110.88129 * 300.68250 * 12 11 10 28 28 C 1.46960 * 110.99688 * 119.95949 * 9 8 6 29 29 C 1.38599 * 119.99814 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47159 * 60.00410 * 1 2 3 31 31 H 1.09003 * 109.46767 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47232 * 299.99929 * 1 2 3 33 33 H 1.07999 * 119.95435 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.94709 * 180.02562 * 5 4 3 35 35 H 1.09006 * 109.49542 * 296.78143 * 10 9 8 36 36 H 1.09004 * 109.48974 * 56.84560 * 10 9 8 37 37 H 1.08996 * 109.48510 * 298.43901 * 11 10 9 38 38 H 1.08998 * 109.50876 * 178.38048 * 11 10 9 39 39 H 1.09000 * 109.47549 * 309.88086 * 13 12 11 40 40 H 1.09007 * 109.47141 * 69.88330 * 13 12 11 41 41 H 1.09002 * 109.47297 * 295.00143 * 18 14 13 42 42 H 1.09004 * 109.46941 * 54.99696 * 18 14 13 43 43 H 0.97002 * 120.00986 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.49445 * 299.35355 * 27 12 11 45 45 H 1.09004 * 109.48974 * 179.29008 * 27 12 11 46 46 H 1.09001 * 109.48887 * 303.14781 * 28 9 8 47 47 H 1.08996 * 109.49025 * 63.22090 * 28 9 8 48 48 H 1.08007 * 120.04922 * 359.70472 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2903 2.3749 -0.0005 5 6 1.9157 3.6078 0.0000 6 6 3.2962 3.6852 0.0016 7 9 3.9052 4.8912 0.0026 8 6 4.0580 2.5215 0.0018 9 7 5.4542 2.5985 0.0029 10 6 6.0143 2.0222 -1.2274 11 6 7.5349 2.1971 -1.2233 12 7 8.0975 1.5417 -0.0344 13 6 9.5643 1.6226 -0.0333 14 6 10.1236 0.7277 1.0745 15 1 9.6880 1.0178 2.0307 16 6 9.7869 -0.6764 0.7879 17 7 9.5276 -1.7599 0.5600 18 6 11.6441 0.8848 1.1382 19 6 12.1818 0.0994 2.3066 20 1 11.5066 -0.4559 2.9406 21 6 13.5359 0.0898 2.5661 22 7 14.0051 -0.5951 3.5860 23 14 14.7039 1.0509 1.4699 24 1 14.8635 2.4276 2.0034 25 1 16.0257 0.3747 1.4419 26 1 14.1511 1.1145 0.0932 27 6 7.5374 2.1181 1.1959 28 6 6.0168 1.9431 1.1918 29 6 3.4302 1.2839 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.2119 2.3174 -0.0005 34 1 1.3250 4.5119 0.0000 35 1 5.7706 0.9608 -1.2756 36 1 5.5919 2.5323 -2.0931 37 1 7.7786 3.2593 -1.2025 38 1 7.9557 1.7448 -2.1213 39 1 9.9473 1.2891 -0.9978 40 1 9.8712 2.6536 0.1428 41 1 12.0870 0.5115 0.2148 42 1 11.8956 1.9382 1.2618 43 1 14.9578 -0.6022 3.7685 44 1 7.7811 3.1794 1.2441 45 1 7.9598 1.6080 2.0616 46 1 5.5963 2.3956 2.0898 47 1 5.7731 0.8809 1.1710 48 1 4.0193 0.3786 0.0058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361923606.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:50 Heat of formation + Delta-G solvation = -10.386908 kcal Electronic energy + Delta-G solvation = -30049.244475 eV Core-core repulsion = 25826.486979 eV Total energy + Delta-G solvation = -4222.757495 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.88471 -40.79231 -39.62698 -37.90869 -36.54124 -35.03012 -33.55132 -31.97675 -31.08010 -30.89930 -29.84831 -27.83904 -27.44202 -25.65532 -23.86352 -23.41195 -22.48637 -21.76248 -21.42559 -19.85818 -18.62923 -17.58678 -17.24256 -16.92819 -16.79086 -16.45273 -16.25661 -15.69602 -15.18689 -15.03472 -14.94918 -14.71998 -14.64626 -14.38064 -14.34102 -13.92212 -13.48342 -13.22696 -13.19941 -12.84976 -12.78378 -12.47443 -12.43124 -12.35426 -12.15027 -11.84462 -11.53828 -11.39402 -11.36833 -11.31713 -11.18420 -11.15497 -10.93728 -10.63938 -10.34895 -9.91470 -9.73321 -9.36621 -9.31264 -8.86216 -8.61337 -8.43800 -8.28088 -6.10133 -4.10793 0.65991 0.86082 2.78217 3.11108 3.26355 3.35346 3.36154 3.40256 3.68459 3.77750 3.89940 4.04560 4.25890 4.38747 4.47533 4.61338 4.68784 4.69316 4.79118 4.89162 4.95602 4.98666 5.03158 5.07512 5.17835 5.24596 5.25849 5.30514 5.39868 5.52184 5.56006 5.62540 5.65342 5.71353 5.78585 5.80090 5.86081 5.89960 6.00954 6.16179 6.22486 6.31538 6.59537 6.82916 6.92478 6.97263 7.05985 7.10051 7.14698 7.64187 8.41018 8.55906 8.93428 9.49681 11.02913 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018974 B = 0.002175 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.332778 B =12868.526419 C =13636.084386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.314 6.314 3 C 0.127 3.873 4 C -0.185 4.185 5 C -0.112 4.112 6 C 0.087 3.913 7 F -0.128 7.128 8 C 0.099 3.901 9 N -0.499 5.499 10 C 0.063 3.937 11 C 0.059 3.941 12 N -0.543 5.543 13 C 0.061 3.939 14 C 0.020 3.980 15 H 0.105 0.895 16 C 0.254 3.746 17 N -0.472 5.472 18 C -0.005 4.005 19 C -0.527 4.527 20 H 0.074 0.926 21 C 0.071 3.929 22 N -0.897 5.897 23 Si 0.877 3.123 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.264 1.264 27 C 0.052 3.948 28 C 0.062 3.938 29 C -0.152 4.152 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.025 0.975 42 H 0.033 0.967 43 H 0.264 0.736 44 H 0.049 0.951 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.051 0.949 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.150 10.684 -9.536 31.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.080 3.920 4 C -0.204 4.204 5 C -0.131 4.131 6 C 0.067 3.933 7 F -0.107 7.107 8 C 0.003 3.997 9 N -0.221 5.221 10 C -0.064 4.064 11 C -0.069 4.069 12 N -0.268 5.268 13 C -0.068 4.068 14 C -0.002 4.002 15 H 0.123 0.877 16 C -0.064 4.064 17 N -0.149 5.149 18 C -0.044 4.044 19 C -0.565 4.565 20 H 0.092 0.908 21 C -0.131 4.131 22 N -0.535 5.535 23 Si 0.704 3.296 24 H -0.200 1.200 25 H -0.213 1.213 26 H -0.188 1.188 27 C -0.076 4.076 28 C -0.065 4.065 29 C -0.173 4.173 30 H 0.075 0.925 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.043 0.957 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.110 0.890 46 H 0.100 0.900 47 H 0.070 0.930 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -28.234 8.842 -9.784 31.162 hybrid contribution 0.690 1.162 -0.285 1.381 sum -27.544 10.004 -10.069 30.986 Atomic orbital electron populations 1.23105 0.78110 1.04282 1.01404 1.86133 1.21578 1.26470 1.88566 1.18863 0.91885 0.84456 0.96762 1.21093 1.00387 0.91288 1.07587 1.20871 0.92414 0.98774 1.01063 1.17421 0.89924 0.80164 1.05811 1.91505 1.83549 1.41721 1.93875 1.18544 0.89941 0.90684 1.00496 1.59891 1.01004 1.57238 1.04002 1.22266 0.94788 0.98341 0.90957 1.22122 0.93169 0.97789 0.93848 1.62178 1.06491 1.55993 1.02108 1.22248 0.85859 0.98785 0.99864 1.18989 0.99712 0.82654 0.98814 0.87739 1.28733 0.90968 0.94543 0.92110 1.81047 1.11308 1.12541 1.09965 1.19640 0.87909 0.98110 0.98765 1.21015 0.93359 1.30528 1.11588 0.90796 1.24994 0.98231 0.95007 0.94910 1.69900 1.13964 1.41253 1.28371 0.86819 0.80599 0.80332 0.81825 1.20049 1.21329 1.18849 1.22258 0.93001 0.98705 0.93626 1.22299 0.94890 0.97597 0.91684 1.20895 0.92123 0.98635 1.05616 0.92512 0.88014 0.92459 0.84500 0.84153 0.93100 0.90190 0.93564 0.89888 0.90086 0.92614 0.95651 0.94933 0.92569 0.93289 0.89003 0.89956 0.93034 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.81 10.50 -19.58 -0.21 -3.02 16 3 C 0.13 1.16 6.68 -39.26 -0.26 0.90 16 4 C -0.18 -1.35 9.04 -39.39 -0.36 -1.71 16 5 C -0.11 -0.88 10.01 -39.57 -0.40 -1.28 16 6 C 0.09 0.90 7.31 -39.25 -0.29 0.61 16 7 F -0.13 -1.51 17.07 2.25 0.04 -1.47 16 8 C 0.10 1.06 4.73 -83.70 -0.40 0.66 16 9 N -0.50 -5.59 4.51 -170.88 -0.77 -6.37 16 10 C 0.06 0.67 5.35 -3.77 -0.02 0.65 16 11 C 0.06 0.64 5.61 -3.76 -0.02 0.62 16 12 N -0.54 -6.97 4.38 -234.47 -1.03 -7.99 16 13 C 0.06 0.84 4.33 -3.83 -0.02 0.82 16 14 C 0.02 0.36 2.12 -93.41 -0.20 0.16 16 15 H 0.10 1.75 6.32 -51.93 -0.33 1.42 16 16 C 0.25 5.22 13.64 -20.72 -0.28 4.94 16 17 N -0.47 -10.70 18.55 42.20 0.78 -9.92 16 18 C -0.01 -0.11 3.49 -27.89 -0.10 -0.21 16 19 C -0.53 -14.15 9.15 -34.44 -0.32 -14.46 16 20 H 0.07 2.18 7.84 -52.49 -0.41 1.77 16 21 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 22 N -0.90 -27.06 13.96 55.43 0.77 -26.28 16 23 Si 0.88 20.63 27.47 -169.99 -4.67 15.96 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 27 C 0.05 0.62 5.41 -3.77 -0.02 0.60 16 28 C 0.06 0.70 5.31 -3.76 -0.02 0.68 16 29 C -0.15 -1.56 8.58 -39.25 -0.34 -1.89 16 30 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 31 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.20 7.66 -51.93 -0.40 -0.19 16 33 H 0.14 0.63 6.29 -52.49 -0.33 0.30 16 34 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.05 0.57 7.45 -51.93 -0.39 0.19 16 36 H 0.08 0.77 8.13 -51.93 -0.42 0.35 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 39 H 0.08 1.09 8.03 -51.93 -0.42 0.68 16 40 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 41 H 0.03 0.55 7.20 -51.93 -0.37 0.18 16 42 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 1.12 6.26 -51.93 -0.33 0.80 16 46 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16 47 H 0.05 0.62 7.24 -51.93 -0.38 0.24 16 48 H 0.14 1.50 7.06 -52.48 -0.37 1.12 16 LS Contribution 393.06 15.07 5.92 5.92 Total: -1.00 -32.88 393.06 -8.34 -41.21 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -7.05 Total: -2.13 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -2.13 Total: -5.91 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.24 Total: -50.56 kcal Atomic # 8 Polarization: -2.81 SS G_CDS: -0.21 Total: -3.02 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.88 -8.34 -41.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361923606.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.826 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds