Wall clock time and date at job start Wed Apr 1 2020 06:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35948 * 116.99628 * 2 1 4 4 C 1.38748 * 119.99626 * 359.97438 * 3 2 1 5 5 C 1.38242 * 120.09816 * 179.97438 * 4 3 2 6 6 C 1.38274 * 120.10547 * 359.97438 * 5 4 3 7 7 F 1.35098 * 120.00164 * 180.02562 * 6 5 4 8 8 C 1.39091 * 119.99747 * 0.04181 * 6 5 4 9 9 N 1.39830 * 120.04935 * 179.97438 * 8 6 5 10 10 C 1.46951 * 110.99842 * 243.75349 * 9 8 6 11 11 C 1.53057 * 109.36779 * 176.81476 * 10 9 8 12 12 N 1.46957 * 109.36201 * 58.39959 * 11 10 9 13 13 C 1.46897 * 110.99799 * 176.81235 * 12 11 10 14 14 C 1.52997 * 109.47305 * 189.87934 * 13 12 11 15 15 H 1.09003 * 109.47368 * 303.83105 * 14 13 12 16 16 C 1.47206 * 109.46972 * 63.82495 * 14 13 12 17 17 N 8.30649 * 167.15349 * 162.35037 * 2 1 3 18 18 C 1.52993 * 109.47571 * 183.82764 * 14 13 12 19 19 C 1.50697 * 109.47424 * 175.00077 * 18 14 13 20 20 H 1.07995 * 120.00214 * 359.97438 * 19 18 14 21 21 C 1.37878 * 120.00185 * 179.97438 * 19 18 14 22 22 N 1.31508 * 120.00497 * 179.97438 * 21 19 18 23 23 Si 1.86808 * 120.00011 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47093 * 89.99956 * 23 21 19 25 25 H 1.48498 * 109.47309 * 209.99855 * 23 21 19 26 26 H 1.48496 * 109.46965 * 329.99940 * 23 21 19 27 27 C 1.46951 * 110.88129 * 300.68250 * 12 11 10 28 28 C 1.46960 * 110.99688 * 119.95949 * 9 8 6 29 29 C 1.38599 * 119.99814 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47159 * 60.00410 * 1 2 3 31 31 H 1.09003 * 109.46767 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47232 * 299.99929 * 1 2 3 33 33 H 1.07999 * 119.95435 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.94709 * 180.02562 * 5 4 3 35 35 H 1.09006 * 109.49542 * 296.78143 * 10 9 8 36 36 H 1.09004 * 109.48974 * 56.84560 * 10 9 8 37 37 H 1.08996 * 109.48510 * 298.43901 * 11 10 9 38 38 H 1.08998 * 109.50876 * 178.38048 * 11 10 9 39 39 H 1.09000 * 109.47549 * 309.88086 * 13 12 11 40 40 H 1.09007 * 109.47141 * 69.88330 * 13 12 11 41 41 H 1.09002 * 109.47297 * 295.00143 * 18 14 13 42 42 H 1.09004 * 109.46941 * 54.99696 * 18 14 13 43 43 H 0.97002 * 120.00986 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.49445 * 299.35355 * 27 12 11 45 45 H 1.09004 * 109.48974 * 179.29008 * 27 12 11 46 46 H 1.09001 * 109.48887 * 303.14781 * 28 9 8 47 47 H 1.08996 * 109.49025 * 63.22090 * 28 9 8 48 48 H 1.08007 * 120.04922 * 359.70472 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2903 2.3749 -0.0005 5 6 1.9157 3.6078 0.0000 6 6 3.2962 3.6852 0.0016 7 9 3.9052 4.8912 0.0026 8 6 4.0580 2.5215 0.0018 9 7 5.4542 2.5985 0.0029 10 6 6.0143 2.0222 -1.2274 11 6 7.5349 2.1971 -1.2233 12 7 8.0975 1.5417 -0.0344 13 6 9.5643 1.6226 -0.0333 14 6 10.1236 0.7277 1.0745 15 1 9.6880 1.0178 2.0307 16 6 9.7869 -0.6764 0.7879 17 7 9.5276 -1.7599 0.5600 18 6 11.6441 0.8848 1.1382 19 6 12.1818 0.0994 2.3066 20 1 11.5066 -0.4559 2.9406 21 6 13.5359 0.0898 2.5661 22 7 14.0051 -0.5951 3.5860 23 14 14.7039 1.0509 1.4699 24 1 14.8635 2.4276 2.0034 25 1 16.0257 0.3747 1.4419 26 1 14.1511 1.1145 0.0932 27 6 7.5374 2.1181 1.1959 28 6 6.0168 1.9431 1.1918 29 6 3.4302 1.2839 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.2119 2.3174 -0.0005 34 1 1.3250 4.5119 0.0000 35 1 5.7706 0.9608 -1.2756 36 1 5.5919 2.5323 -2.0931 37 1 7.7786 3.2593 -1.2025 38 1 7.9557 1.7448 -2.1213 39 1 9.9473 1.2891 -0.9978 40 1 9.8712 2.6536 0.1428 41 1 12.0870 0.5115 0.2148 42 1 11.8956 1.9382 1.2618 43 1 14.9578 -0.6022 3.7685 44 1 7.7811 3.1794 1.2441 45 1 7.9598 1.6080 2.0616 46 1 5.5963 2.3956 2.0898 47 1 5.7731 0.8809 1.1710 48 1 4.0193 0.3786 0.0058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361923606.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:47 Heat of formation + Delta-G solvation = -31.857274 kcal Electronic energy + Delta-G solvation = -30050.175499 eV Core-core repulsion = 25826.486979 eV Total energy + Delta-G solvation = -4223.688520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -49.68383 -41.50940 -40.43655 -38.89572 -37.70814 -36.21399 -35.30462 -33.67457 -31.97183 -31.66773 -30.72996 -29.06556 -28.05220 -26.84514 -24.76142 -24.30071 -23.57991 -23.14878 -22.51215 -20.74143 -19.30642 -18.90597 -18.33472 -18.22885 -17.91030 -17.36462 -16.88566 -16.48083 -16.40036 -15.89562 -15.83340 -15.80387 -15.62743 -15.54632 -15.22876 -15.05011 -14.79034 -14.52789 -14.25851 -13.87361 -13.84838 -13.69566 -13.50118 -13.40333 -13.12880 -13.05105 -12.98162 -12.66125 -12.50861 -12.29624 -12.26836 -12.15668 -11.92545 -11.81722 -11.75911 -11.59545 -11.43772 -11.16522 -10.72004 -10.05791 -9.72670 -9.24012 -9.12326 -8.23594 -6.29155 -0.01667 0.16532 1.43374 1.46411 1.56618 2.05246 2.13284 2.24273 2.41984 2.43551 2.61901 2.87935 3.12816 3.32879 3.33688 3.64547 3.81236 3.92322 3.94285 4.13705 4.14506 4.23094 4.27984 4.34497 4.39608 4.40974 4.43777 4.46250 4.50038 4.60945 4.65023 4.74777 4.75862 4.79532 4.90880 4.93097 4.95977 5.01556 5.04680 5.12533 5.16678 5.24149 5.45477 5.50025 5.64438 5.73339 6.01068 6.13614 6.18369 6.27977 6.35017 6.78254 6.91726 7.35161 8.93292 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018974 B = 0.002175 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.332778 B =12868.526419 C =13636.084386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.338 6.338 3 C 0.122 3.878 4 C -0.174 4.174 5 C -0.101 4.101 6 C 0.067 3.933 7 F -0.140 7.140 8 C 0.087 3.913 9 N -0.502 5.502 10 C 0.066 3.934 11 C 0.063 3.937 12 N -0.558 5.558 13 C 0.071 3.929 14 C 0.025 3.975 15 H 0.112 0.888 16 C 0.264 3.736 17 N -0.516 5.516 18 C -0.003 4.003 19 C -0.530 4.530 20 H 0.028 0.972 21 C 0.002 3.998 22 N -0.954 5.954 23 Si 0.949 3.051 24 H -0.257 1.257 25 H -0.296 1.296 26 H -0.236 1.236 27 C 0.054 3.946 28 C 0.067 3.933 29 C -0.167 4.167 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.170 0.830 34 H 0.168 0.832 35 H 0.038 0.962 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.028 0.972 42 H 0.062 0.938 43 H 0.264 0.736 44 H 0.056 0.944 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.036 0.964 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.751 13.392 -11.483 34.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.252 6.252 3 C 0.075 3.925 4 C -0.192 4.192 5 C -0.120 4.120 6 C 0.047 3.953 7 F -0.118 7.118 8 C -0.009 4.009 9 N -0.224 5.224 10 C -0.060 4.060 11 C -0.065 4.065 12 N -0.283 5.283 13 C -0.057 4.057 14 C 0.003 3.997 15 H 0.130 0.870 16 C -0.052 4.052 17 N -0.194 5.194 18 C -0.042 4.042 19 C -0.568 4.568 20 H 0.046 0.954 21 C -0.195 4.195 22 N -0.595 5.595 23 Si 0.772 3.228 24 H -0.182 1.182 25 H -0.223 1.223 26 H -0.159 1.159 27 C -0.074 4.074 28 C -0.060 4.060 29 C -0.188 4.188 30 H 0.091 0.909 31 H 0.132 0.868 32 H 0.089 0.911 33 H 0.187 0.813 34 H 0.185 0.815 35 H 0.056 0.944 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.047 0.953 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.055 0.945 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -29.879 11.564 -11.749 34.125 hybrid contribution 1.010 0.214 0.397 1.106 sum -28.869 11.778 -11.352 33.181 Atomic orbital electron populations 1.23422 0.75904 1.05731 1.02821 1.86111 1.23964 1.26620 1.88464 1.19004 0.91675 0.85370 0.96412 1.21414 1.01854 0.90170 1.05797 1.21186 0.91524 1.00076 0.99263 1.17664 0.90934 0.79511 1.07215 1.91469 1.83937 1.42284 1.94157 1.18589 0.89684 0.91086 1.01494 1.59917 1.01614 1.56957 1.03907 1.22247 0.94828 0.97702 0.91267 1.22144 0.93039 0.98053 0.93237 1.62107 1.06081 1.57042 1.03076 1.22121 0.86383 0.98843 0.98367 1.19089 0.97864 0.81639 1.01061 0.87028 1.29429 0.89853 0.95089 0.90807 1.81043 1.12686 1.13943 1.11710 1.19584 0.89890 0.98603 0.96080 1.21383 0.92888 1.29990 1.12499 0.95377 1.26052 1.00540 0.96365 0.96529 1.70087 1.14371 1.43951 1.31081 0.85682 0.77273 0.79028 0.80854 1.18178 1.22260 1.15938 1.22231 0.93152 0.98880 0.93094 1.22211 0.94713 0.96808 0.92262 1.20805 0.92948 0.97963 1.07060 0.90927 0.86788 0.91059 0.81276 0.81460 0.94389 0.89154 0.92814 0.88937 0.89317 0.90145 0.95330 0.91958 0.92687 0.92543 0.89783 0.89544 0.94520 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.22 16 2 O -0.34 -5.74 10.50 -92.97 -0.98 -6.72 16 3 C 0.12 2.12 6.68 22.48 0.15 2.27 16 4 C -0.17 -2.10 9.04 22.39 0.20 -1.89 16 5 C -0.10 -1.36 10.01 22.28 0.22 -1.13 16 6 C 0.07 1.31 7.31 22.48 0.16 1.47 16 7 F -0.14 -3.15 17.07 44.97 0.77 -2.38 16 8 C 0.09 1.83 4.73 38.20 0.18 2.01 16 9 N -0.50 -11.07 4.51 -694.56 -3.14 -14.20 16 10 C 0.07 1.36 5.35 86.31 0.46 1.82 16 11 C 0.06 1.26 5.61 86.31 0.48 1.75 16 12 N -0.56 -13.52 4.38 -895.71 -3.92 -17.44 16 13 C 0.07 1.78 4.33 86.30 0.37 2.15 16 14 C 0.03 0.86 2.12 -12.60 -0.03 0.83 16 15 H 0.11 3.66 6.32 -2.39 -0.02 3.65 16 16 C 0.26 10.94 13.64 89.43 1.22 12.16 16 17 N -0.52 -23.91 18.55 20.02 0.37 -23.54 16 18 C 0.00 -0.10 3.49 29.84 0.10 0.00 16 19 C -0.53 -28.73 9.15 25.60 0.23 -28.49 16 20 H 0.03 1.73 7.84 -2.91 -0.02 1.70 16 21 C 0.00 0.10 5.47 84.66 0.46 0.56 16 22 N -0.95 -59.38 13.96 21.45 0.30 -59.08 16 23 Si 0.95 41.63 27.47 68.60 1.88 43.51 16 24 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 25 H -0.30 -13.34 7.11 99.48 0.71 -12.63 16 26 H -0.24 -9.25 6.54 99.48 0.65 -8.60 16 27 C 0.05 1.25 5.41 86.31 0.47 1.72 16 28 C 0.07 1.51 5.31 86.31 0.46 1.97 16 29 C -0.17 -3.48 8.58 22.48 0.19 -3.28 16 30 H 0.07 0.29 7.66 -2.39 -0.02 0.27 16 31 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.31 7.66 -2.39 -0.02 0.29 16 33 H 0.17 0.88 6.29 -2.91 -0.02 0.87 16 34 H 0.17 1.29 8.06 -2.91 -0.02 1.26 16 35 H 0.04 0.87 7.45 -2.38 -0.02 0.86 16 36 H 0.09 1.65 8.13 -2.39 -0.02 1.63 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.09 1.68 8.07 -2.39 -0.02 1.66 16 39 H 0.09 2.11 8.03 -2.39 -0.02 2.09 16 40 H 0.08 1.66 8.12 -2.38 -0.02 1.64 16 41 H 0.03 1.15 7.20 -2.39 -0.02 1.14 16 42 H 0.06 2.21 7.57 -2.38 -0.02 2.20 16 43 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.08 2.03 6.26 -2.39 -0.01 2.02 16 46 H 0.09 1.85 8.13 -2.39 -0.02 1.83 16 47 H 0.04 0.93 7.24 -2.39 -0.02 0.91 16 48 H 0.12 2.88 7.06 -2.91 -0.02 2.86 16 Total: -1.00 -74.23 393.06 2.67 -71.56 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.92 Total: 13.16 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 6.47 Total: -4.87 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -6.39 Total: -114.26 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.98 Total: -6.72 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.77 Total: -2.38 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 1.88 Total: 43.51 kcal Total: -74.23 2.67 -71.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361923606.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.701 kcal (2) G-P(sol) polarization free energy of solvation -74.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds