Wall clock time and date at job start Wed Apr 1 2020 06:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34751 * 117.00101 * 2 1 4 4 O 1.21517 * 119.99987 * 359.97438 * 3 2 1 5 5 C 1.47379 * 120.00295 * 179.97438 * 3 2 1 6 6 C 1.36671 * 125.78680 * 180.30708 * 5 3 2 7 7 N 1.34780 * 106.83792 * 180.14694 * 6 5 3 8 8 C 1.46499 * 126.58461 * 179.88326 * 7 6 5 9 9 H 1.09002 * 109.50216 * 154.78994 * 8 7 6 10 10 C 1.53115 * 109.50244 * 34.70937 * 8 7 6 11 11 C 1.53117 * 109.16360 * 182.40196 * 10 8 7 12 12 C 1.53038 * 109.27421 * 57.65205 * 11 10 8 13 13 N 1.46847 * 109.52866 * 300.82510 * 12 11 10 14 14 C 1.46899 * 111.00044 * 185.83761 * 13 12 11 15 15 C 1.52997 * 109.47254 * 66.04569 * 14 13 12 16 16 H 1.09004 * 109.47346 * 305.00031 * 15 14 13 17 17 C 1.47201 * 109.47375 * 64.99699 * 15 14 13 18 18 N 8.82343 * 167.66946 * 74.18994 * 5 1 2 19 19 C 1.52997 * 109.47504 * 184.99955 * 15 14 13 20 20 C 1.50691 * 109.47514 * 175.00045 * 19 15 14 21 21 H 1.08007 * 120.00409 * 0.02562 * 20 19 15 22 22 C 1.37880 * 120.00516 * 180.02562 * 20 19 15 23 23 N 1.31513 * 119.99418 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00271 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47054 * 59.99934 * 24 22 20 26 26 H 1.48499 * 109.46907 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47014 * 299.99916 * 24 22 20 28 28 C 1.46844 * 111.19785 * 61.74095 * 13 12 11 29 29 N 1.40210 * 106.82711 * 359.61834 * 7 6 5 30 30 N 1.28761 * 108.38699 * 0.24470 * 29 7 6 31 31 H 1.09005 * 109.47187 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47456 * 300.00137 * 1 2 3 33 33 H 1.09000 * 109.47172 * 60.00029 * 1 2 3 34 34 H 1.08002 * 126.57297 * 0.02562 * 6 5 3 35 35 H 1.09003 * 109.52163 * 62.49943 * 10 8 7 36 36 H 1.08995 * 109.58008 * 302.34608 * 10 8 7 37 37 H 1.09005 * 109.50250 * 297.72011 * 11 10 8 38 38 H 1.08994 * 109.50904 * 177.59446 * 11 10 8 39 39 H 1.09001 * 109.46416 * 180.80264 * 12 11 10 40 40 H 1.09010 * 109.44950 * 60.83864 * 12 11 10 41 41 H 1.09002 * 109.47043 * 186.04640 * 14 13 12 42 42 H 1.09001 * 109.47354 * 306.04701 * 14 13 12 43 43 H 1.09003 * 109.46810 * 294.99909 * 19 15 14 44 44 H 1.08998 * 109.47247 * 54.99778 * 19 15 14 45 45 H 0.97005 * 119.99823 * 180.02562 * 23 22 20 46 46 H 1.09004 * 109.46477 * 58.27519 * 28 13 12 47 47 H 1.08993 * 109.46460 * 178.24692 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2198 -0.0005 5 6 3.5356 1.2778 0.0006 6 6 4.2756 2.4268 0.0066 7 7 5.5715 2.0565 0.0015 8 6 6.7343 2.9477 0.0026 9 1 7.5897 2.4293 0.4356 10 6 6.4204 4.1966 0.8310 11 6 7.6178 5.1493 0.7775 12 6 7.9190 5.5008 -0.6813 13 7 8.2135 4.2731 -1.4312 14 6 8.6421 4.5833 -2.8016 15 6 9.9843 5.3167 -2.7624 16 1 9.8994 6.1961 -2.1240 17 6 11.0189 4.4182 -2.2247 18 7 11.8167 3.7257 -1.8113 19 6 10.3706 5.7497 -4.1781 20 6 11.6288 6.5772 -4.1247 21 1 12.1057 6.7743 -3.1759 22 6 12.1713 7.0828 -5.2870 23 7 11.5909 6.8424 -6.4424 24 14 13.7307 8.1093 -5.2207 25 1 14.8300 7.3021 -4.6332 26 1 14.1055 8.5294 -6.5948 27 1 13.4964 9.3117 -4.3815 28 6 7.0610 3.3630 -1.4337 29 7 5.5931 0.6546 0.0012 30 7 4.3776 0.2297 0.0007 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 3.8949 3.4375 0.0121 35 1 6.2294 3.9093 1.8650 36 1 5.5406 4.6940 0.4228 37 1 8.4877 4.6659 1.2223 38 1 7.3841 6.0592 1.3302 39 1 8.7800 6.1678 -0.7238 40 1 7.0536 5.9965 -1.1213 41 1 8.7503 3.6576 -3.3668 42 1 7.8959 5.2168 -3.2811 43 1 10.5422 4.8668 -4.7939 44 1 9.5639 6.3423 -4.6096 45 1 11.9728 7.1978 -7.2603 46 1 6.1998 3.8688 -1.8703 47 1 7.2989 2.4773 -2.0226 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368847779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:36 Heat of formation + Delta-G solvation = 37.251465 kcal Electronic energy + Delta-G solvation = -29604.882002 eV Core-core repulsion = 25404.110223 eV Total energy + Delta-G solvation = -4200.771779 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -42.70778 -40.48912 -39.59507 -36.85179 -36.81194 -35.12869 -33.80551 -32.97670 -31.66966 -31.40722 -30.20445 -28.14463 -27.17652 -25.21198 -24.36914 -24.17103 -22.87506 -22.01845 -21.62398 -21.25658 -20.08182 -18.66099 -17.45154 -17.01757 -16.92636 -16.74088 -16.41549 -16.09296 -15.73766 -15.23866 -14.98949 -14.77309 -14.61467 -14.30049 -14.10278 -13.94537 -13.59209 -13.35485 -13.14521 -12.91222 -12.77675 -12.42338 -12.35991 -12.18798 -12.02753 -11.81813 -11.68538 -11.44421 -11.22428 -11.21684 -11.17962 -11.17737 -11.09786 -11.06921 -10.73343 -10.69564 -10.52904 -10.22884 -9.77443 -9.61836 -9.31755 -8.55514 -8.49651 -6.15669 -4.19419 0.64268 1.16701 1.49846 2.28837 2.63522 3.26585 3.31629 3.34688 3.56421 3.68221 3.75873 3.82336 3.82645 4.15494 4.26329 4.35641 4.40970 4.43968 4.63943 4.73023 4.74270 4.77797 4.81413 4.81948 5.02051 5.08671 5.14006 5.21991 5.22532 5.24020 5.29159 5.44539 5.49078 5.52588 5.60736 5.72208 5.86211 5.89200 5.91440 5.94927 6.21055 6.37216 6.81383 6.87969 7.23021 7.33255 7.43840 7.62549 7.78683 8.15438 8.49859 8.84872 9.46491 10.95067 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021364 B = 0.001878 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.299940 B =14907.090218 C =15207.838070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.340 6.340 3 C 0.560 3.440 4 O -0.506 6.506 5 C -0.097 4.097 6 C 0.107 3.893 7 N -0.346 5.346 8 C 0.150 3.850 9 H 0.127 0.873 10 C -0.132 4.132 11 C -0.111 4.111 12 C 0.041 3.959 13 N -0.536 5.536 14 C 0.064 3.936 15 C 0.011 3.989 16 H 0.101 0.899 17 C 0.253 3.747 18 N -0.475 5.475 19 C 0.031 3.969 20 C -0.528 4.528 21 H 0.056 0.944 22 C 0.063 3.937 23 N -0.891 5.891 24 Si 0.892 3.108 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.275 1.275 28 C 0.049 3.951 29 N -0.052 5.052 30 N -0.185 5.185 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.206 0.794 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.042 0.958 41 H 0.083 0.917 42 H 0.058 0.942 43 H 0.026 0.974 44 H 0.037 0.963 45 H 0.264 0.736 46 H 0.045 0.955 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.518 -6.007 14.484 26.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.255 6.255 3 C 0.402 3.598 4 O -0.393 6.393 5 C -0.234 4.234 6 C -0.051 4.051 7 N -0.129 5.129 8 C 0.049 3.951 9 H 0.145 0.855 10 C -0.171 4.171 11 C -0.150 4.150 12 C -0.086 4.086 13 N -0.261 5.261 14 C -0.064 4.064 15 C -0.011 4.011 16 H 0.119 0.881 17 C -0.064 4.064 18 N -0.152 5.152 19 C -0.007 4.007 20 C -0.566 4.566 21 H 0.075 0.925 22 C -0.139 4.139 23 N -0.529 5.529 24 Si 0.720 3.280 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.200 1.200 28 C -0.080 4.080 29 N -0.032 5.032 30 N -0.059 5.059 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.223 0.777 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.060 0.940 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.045 0.955 44 H 0.055 0.945 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.228 -8.203 15.140 25.811 hybrid contribution -0.777 2.239 -0.717 2.476 sum -20.005 -5.965 14.424 25.373 Atomic orbital electron populations 1.23359 0.75580 1.04099 1.02743 1.86648 1.23584 1.31565 1.83699 1.19419 0.86143 0.81849 0.72340 1.90887 1.65709 1.35964 1.46788 1.20178 0.92522 0.89811 1.20864 1.23264 0.84035 1.01226 0.96565 1.50808 1.06250 1.07957 1.47882 1.21834 0.85201 0.89432 0.98655 0.85475 1.22071 1.00431 0.94331 1.00262 1.21552 0.97339 0.99077 0.96994 1.22326 1.01445 0.91695 0.93145 1.61863 1.33162 1.14805 1.16248 1.22262 0.95905 1.01017 0.87180 1.19249 0.86770 0.93412 1.01630 0.88087 1.28746 0.93200 0.92885 0.91541 1.80937 1.11381 1.11446 1.11403 1.19171 0.97575 0.97235 0.86732 1.21070 1.09556 1.32696 0.93311 0.92534 1.24953 0.97309 0.96234 0.95422 1.69924 1.39961 1.45128 0.97898 0.86644 0.83593 0.80643 0.77151 1.20197 1.21174 1.20049 1.22353 0.93442 0.98422 0.93831 1.82176 1.13272 0.86187 1.21576 1.74811 0.96695 1.25685 1.08753 0.87696 0.91659 0.91590 0.77737 0.90298 0.90694 0.90192 0.89948 0.88847 0.93966 0.89881 0.92370 0.95526 0.94450 0.92679 0.93669 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.57 101.05 1.07 1.29 16 2 O -0.34 -3.40 10.57 -40.63 -0.43 -3.83 16 3 C 0.56 6.04 7.96 34.45 0.27 6.31 16 4 O -0.51 -5.93 16.65 -19.28 -0.32 -6.25 16 5 C -0.10 -1.04 7.02 -83.57 -0.59 -1.63 16 6 C 0.11 0.90 10.40 -16.82 -0.17 0.72 16 7 N -0.35 -3.20 3.55 -54.47 -0.19 -3.39 16 8 C 0.15 1.20 3.39 -67.85 -0.23 0.97 16 9 H 0.13 1.13 8.14 -51.93 -0.42 0.70 16 10 C -0.13 -0.77 4.98 -26.61 -0.13 -0.90 16 11 C -0.11 -0.74 6.09 -26.65 -0.16 -0.90 16 12 C 0.04 0.36 5.30 -3.83 -0.02 0.34 16 13 N -0.54 -5.72 4.36 -234.67 -1.02 -6.74 16 14 C 0.06 0.83 4.32 -3.83 -0.02 0.81 16 15 C 0.01 0.19 2.14 -93.41 -0.20 -0.01 16 16 H 0.10 1.54 6.23 -51.93 -0.32 1.21 16 17 C 0.25 4.93 13.66 -20.81 -0.28 4.65 16 18 N -0.47 -10.23 18.53 42.09 0.78 -9.45 16 19 C 0.03 0.69 4.42 -27.89 -0.12 0.56 16 20 C -0.53 -13.49 8.60 -34.44 -0.30 -13.79 16 21 H 0.06 1.43 7.59 -52.48 -0.40 1.03 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -24.84 13.29 55.43 0.74 -24.10 16 24 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 28 C 0.05 0.45 5.07 -3.83 -0.02 0.43 16 29 N -0.05 -0.63 13.78 60.35 0.83 0.20 16 30 N -0.18 -2.34 12.39 32.83 0.41 -1.93 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.21 1.06 7.28 -52.49 -0.38 0.68 16 35 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.35 7.11 -51.93 -0.37 -0.02 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.89 6.13 -51.93 -0.32 0.58 16 40 H 0.04 0.33 8.14 -51.92 -0.42 -0.09 16 41 H 0.08 1.11 7.98 -51.93 -0.41 0.70 16 42 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.09 0.92 8.01 -51.93 -0.42 0.50 16 LS Contribution 399.67 15.07 6.02 6.02 Total: -1.00 -32.59 399.67 -6.04 -38.63 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -6.83 Total: -5.32 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -1.00 Total: 0.44 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 1.54 Total: -45.42 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.75 Total: -10.08 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.59 -6.04 -38.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368847779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.877 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds