Wall clock time and date at job start Wed Apr 1 2020 06:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34748 * 117.00166 * 2 1 4 4 O 1.21519 * 119.99938 * 359.97438 * 3 2 1 5 5 C 1.47382 * 120.00229 * 179.97438 * 3 2 1 6 6 C 1.36669 * 125.78063 * 180.30297 * 5 3 2 7 7 N 1.34784 * 106.83308 * 180.14976 * 6 5 3 8 8 C 1.46500 * 126.58703 * 179.89023 * 7 6 5 9 9 H 1.09001 * 109.53784 * 204.81323 * 8 7 6 10 10 C 1.53128 * 109.49913 * 324.90614 * 8 7 6 11 11 C 1.53116 * 109.15636 * 177.59499 * 10 8 7 12 12 C 1.53033 * 109.28247 * 302.34270 * 11 10 8 13 13 N 1.46850 * 109.51910 * 59.18394 * 12 11 10 14 14 C 1.46906 * 110.99842 * 174.16001 * 13 12 11 15 15 C 1.52990 * 109.47121 * 199.98473 * 14 13 12 16 16 H 1.09001 * 109.47413 * 304.65313 * 15 14 13 17 17 C 1.47206 * 109.47237 * 64.65530 * 15 14 13 18 18 N 9.91193 * 157.33162 * 327.99734 * 3 1 2 19 19 C 1.52999 * 109.47275 * 184.65384 * 15 14 13 20 20 C 1.50696 * 109.47504 * 174.99957 * 19 15 14 21 21 H 1.08001 * 119.99899 * 0.02562 * 20 19 15 22 22 C 1.37880 * 120.00483 * 179.97438 * 20 19 15 23 23 N 1.31514 * 119.99684 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00224 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46657 * 90.00757 * 24 22 20 26 26 H 1.48498 * 109.47210 * 210.00014 * 24 22 20 27 27 H 1.48494 * 109.47197 * 330.00565 * 24 22 20 28 28 C 1.46848 * 111.19927 * 298.25349 * 13 12 11 29 29 N 1.40210 * 106.83059 * 359.62096 * 7 6 5 30 30 N 1.28763 * 108.38147 * 0.24575 * 29 7 6 31 31 H 1.08991 * 109.47011 * 299.99890 * 1 2 3 32 32 H 1.08991 * 109.46795 * 59.99893 * 1 2 3 33 33 H 1.09002 * 109.46537 * 179.97438 * 1 2 3 34 34 H 1.07999 * 126.58384 * 0.02562 * 6 5 3 35 35 H 1.08999 * 109.52121 * 297.49901 * 10 8 7 36 36 H 1.08995 * 109.52000 * 57.62922 * 10 8 7 37 37 H 1.09005 * 109.50914 * 62.29098 * 11 10 8 38 38 H 1.09003 * 109.50193 * 182.40011 * 11 10 8 39 39 H 1.08996 * 109.46371 * 299.17078 * 12 11 10 40 40 H 1.09004 * 109.46293 * 179.19574 * 12 11 10 41 41 H 1.09010 * 109.46628 * 79.98458 * 14 13 12 42 42 H 1.09000 * 109.47408 * 319.99180 * 14 13 12 43 43 H 1.09004 * 109.46897 * 55.00229 * 19 15 14 44 44 H 1.08999 * 109.47479 * 295.00463 * 19 15 14 45 45 H 0.97001 * 120.00205 * 179.97438 * 23 22 20 46 46 H 1.08999 * 109.46479 * 181.76135 * 28 13 12 47 47 H 1.08998 * 109.46514 * 301.74313 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2198 -0.0005 5 6 3.5356 1.2777 0.0006 6 6 4.2756 2.4268 0.0065 7 7 5.5715 2.0565 0.0014 8 6 6.7343 2.9477 0.0025 9 1 7.5897 2.4314 -0.4332 10 6 6.4194 4.1998 -0.8207 11 6 7.6170 5.1523 -0.7647 12 6 7.9198 5.4981 0.6949 13 7 8.2152 4.2675 1.4397 14 6 8.6455 4.5724 2.8108 15 6 9.4031 3.3741 3.3859 16 1 8.7784 2.4833 3.3196 17 6 10.6419 3.1628 2.6192 18 7 11.5986 2.9995 2.0245 19 6 9.7503 3.6455 4.8511 20 6 10.3868 2.4190 5.4521 21 1 10.5300 1.5344 4.8493 22 6 10.7876 2.4263 6.7714 23 7 10.6137 3.5036 7.5054 24 14 11.5760 0.9056 7.5166 25 1 13.0477 0.9683 7.3280 26 1 11.2650 0.8473 8.9675 27 1 11.0423 -0.3074 6.8467 28 6 7.0627 3.3574 1.4400 29 7 5.5932 0.6546 0.0011 30 7 4.3777 0.2297 0.0006 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8899 33 1 -0.3632 -1.0277 -0.0005 34 1 3.8950 3.4375 0.0120 35 1 6.2273 3.9166 -1.8556 36 1 5.5398 4.6946 -0.4091 37 1 8.4864 4.6707 -1.2125 38 1 7.3826 6.0643 -1.3138 39 1 7.0551 5.9921 1.1380 40 1 8.7810 6.1649 0.7391 41 1 7.7714 4.7800 3.4282 42 1 9.2989 5.4448 2.8011 43 1 8.8410 3.8893 5.4007 44 1 10.4462 4.4823 4.9106 45 1 10.8953 3.5087 8.4336 46 1 7.3013 2.4694 2.0253 47 1 6.2019 3.8615 1.8794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368847780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:45 Heat of formation + Delta-G solvation = 36.321813 kcal Electronic energy + Delta-G solvation = -29915.480071 eV Core-core repulsion = 25714.667980 eV Total energy + Delta-G solvation = -4200.812091 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.63804 -40.43160 -39.56645 -36.76524 -36.73991 -35.08879 -33.84890 -32.96535 -31.56567 -31.23265 -30.30349 -28.09033 -27.17325 -24.95605 -24.74017 -24.03761 -22.66144 -21.91145 -21.74864 -21.21717 -20.05840 -18.61668 -17.39482 -17.00500 -16.91990 -16.75748 -16.37326 -15.97556 -15.68969 -15.13639 -15.10803 -14.76822 -14.58278 -14.20964 -14.02683 -13.91265 -13.51900 -13.33882 -13.25739 -12.78995 -12.71170 -12.38067 -12.29717 -12.15434 -12.00685 -11.75658 -11.72763 -11.46072 -11.25140 -11.21584 -11.12218 -11.11483 -11.06801 -11.01346 -10.74259 -10.62593 -10.49223 -10.23917 -9.69839 -9.59493 -9.28561 -8.54921 -8.48251 -6.13640 -4.16910 0.70761 1.24314 1.56434 2.35071 2.70310 3.28380 3.35007 3.38683 3.57193 3.68236 3.77010 3.85469 3.87648 4.18250 4.30770 4.38766 4.40504 4.49706 4.63688 4.75253 4.78573 4.81195 4.82731 4.87175 5.02982 5.12696 5.14412 5.18464 5.24898 5.27747 5.33688 5.43145 5.51389 5.53097 5.63473 5.67283 5.83373 5.87508 5.95130 6.00863 6.22298 6.38445 6.83206 6.86322 7.29217 7.35142 7.45357 7.70154 7.81536 8.18115 8.51912 8.87732 9.49162 10.97186 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010194 B = 0.002515 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.031394 B =11128.325298 C =12845.594496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.339 6.339 3 C 0.561 3.439 4 O -0.508 6.508 5 C -0.097 4.097 6 C 0.106 3.894 7 N -0.346 5.346 8 C 0.150 3.850 9 H 0.127 0.873 10 C -0.132 4.132 11 C -0.111 4.111 12 C 0.049 3.951 13 N -0.536 5.536 14 C 0.065 3.935 15 C 0.012 3.988 16 H 0.098 0.902 17 C 0.255 3.745 18 N -0.478 5.478 19 C 0.032 3.968 20 C -0.527 4.527 21 H 0.057 0.943 22 C 0.063 3.937 23 N -0.892 5.892 24 Si 0.891 3.109 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.272 1.272 28 C 0.044 3.956 29 N -0.048 5.048 30 N -0.184 5.184 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.205 0.795 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.039 0.961 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.085 0.915 43 H 0.037 0.963 44 H 0.026 0.974 45 H 0.263 0.737 46 H 0.096 0.904 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.716 3.530 -17.471 25.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.254 6.254 3 C 0.403 3.597 4 O -0.395 6.395 5 C -0.233 4.233 6 C -0.052 4.052 7 N -0.129 5.129 8 C 0.049 3.951 9 H 0.145 0.855 10 C -0.171 4.171 11 C -0.149 4.149 12 C -0.079 4.079 13 N -0.261 5.261 14 C -0.063 4.063 15 C -0.010 4.010 16 H 0.116 0.884 17 C -0.062 4.062 18 N -0.154 5.154 19 C -0.007 4.007 20 C -0.565 4.565 21 H 0.075 0.925 22 C -0.139 4.139 23 N -0.530 5.530 24 Si 0.719 3.281 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.197 1.197 28 C -0.086 4.086 29 N -0.029 5.029 30 N -0.059 5.059 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.222 0.778 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.058 0.942 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.072 0.928 46 H 0.114 0.886 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.177 2.177 -18.430 24.619 hybrid contribution -1.264 0.601 1.264 1.886 sum -17.441 2.778 -17.166 24.629 Atomic orbital electron populations 1.23352 0.75628 1.04082 1.02697 1.86653 1.23543 1.31559 1.83672 1.19422 0.86154 0.81832 0.72274 1.90880 1.65732 1.35978 1.46898 1.20169 0.92507 0.89823 1.20840 1.23236 0.84050 1.01173 0.96727 1.50788 1.06185 1.07997 1.47937 1.21817 0.85289 0.89353 0.98673 0.85471 1.22062 1.00258 0.94368 1.00383 1.21544 0.97501 0.99056 0.96847 1.22211 1.00870 0.91455 0.93348 1.61848 1.33445 1.14439 1.16372 1.22274 0.99285 0.98561 0.86226 1.19218 0.87238 0.98379 0.96186 0.88374 1.28906 0.94012 0.92052 0.91211 1.81093 1.12068 1.09733 1.12547 1.19173 0.98074 0.98166 0.85288 1.21122 1.40361 0.98919 0.96092 0.92474 1.24946 0.95579 0.96197 0.97188 1.69931 1.47125 1.27783 1.08194 0.86592 0.79813 0.83358 0.78358 1.20596 1.21080 1.19666 1.22473 0.93189 0.99025 0.93868 1.82205 1.13229 0.86080 1.21369 1.74817 0.96697 1.25655 1.08724 0.91594 0.91709 0.87715 0.77809 0.90284 0.90714 0.90178 0.90127 0.94234 0.89697 0.92229 0.89657 0.94514 0.95517 0.92766 0.88583 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.57 101.05 1.07 1.31 16 2 O -0.34 -3.61 10.57 -40.62 -0.43 -4.04 16 3 C 0.56 6.38 7.96 34.45 0.27 6.66 16 4 O -0.51 -6.19 16.65 -19.28 -0.32 -6.51 16 5 C -0.10 -1.11 7.02 -83.57 -0.59 -1.69 16 6 C 0.11 0.95 10.40 -16.82 -0.17 0.77 16 7 N -0.35 -3.43 3.54 -54.47 -0.19 -3.62 16 8 C 0.15 1.26 3.39 -67.84 -0.23 1.03 16 9 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 10 C -0.13 -0.77 4.99 -26.61 -0.13 -0.90 16 11 C -0.11 -0.68 6.09 -26.65 -0.16 -0.84 16 12 C 0.05 0.39 5.43 -3.83 -0.02 0.37 16 13 N -0.54 -5.70 4.28 -234.67 -1.00 -6.71 16 14 C 0.06 0.83 4.37 -3.83 -0.02 0.81 16 15 C 0.01 0.20 2.27 -93.41 -0.21 -0.01 16 16 H 0.10 1.63 6.71 -51.93 -0.35 1.28 16 17 C 0.26 5.05 13.67 -20.68 -0.28 4.77 16 18 N -0.48 -10.36 18.55 42.24 0.78 -9.57 16 19 C 0.03 0.70 4.42 -27.89 -0.12 0.58 16 20 C -0.53 -13.79 8.60 -34.44 -0.30 -14.08 16 21 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -25.16 13.29 55.43 0.74 -24.43 16 24 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 27 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 28 C 0.04 0.43 4.90 -3.83 -0.02 0.41 16 29 N -0.05 -0.64 13.78 60.35 0.83 0.20 16 30 N -0.18 -2.49 12.39 32.83 0.41 -2.08 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.21 1.14 7.29 -52.49 -0.38 0.75 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.34 7.11 -51.93 -0.37 -0.03 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.69 7.93 -51.93 -0.41 0.28 16 41 H 0.06 0.70 8.00 -51.92 -0.42 0.28 16 42 H 0.08 1.08 7.79 -51.93 -0.40 0.67 16 43 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.10 1.11 6.65 -51.93 -0.35 0.77 16 47 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 400.37 15.07 6.03 6.03 Total: -1.00 -33.13 400.37 -6.05 -39.18 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -6.86 Total: -5.45 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -1.01 Total: 0.79 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 1.56 Total: -46.21 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.75 Total: -10.55 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.13 -6.05 -39.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368847780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.502 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds