Wall clock time and date at job start Wed Apr 1 2020 06:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34748 * 117.00166 * 2 1 4 4 O 1.21519 * 119.99938 * 359.97438 * 3 2 1 5 5 C 1.47382 * 120.00229 * 179.97438 * 3 2 1 6 6 C 1.36669 * 125.78063 * 180.30297 * 5 3 2 7 7 N 1.34784 * 106.83308 * 180.14976 * 6 5 3 8 8 C 1.46500 * 126.58703 * 179.89023 * 7 6 5 9 9 H 1.09001 * 109.53784 * 204.81323 * 8 7 6 10 10 C 1.53128 * 109.49913 * 324.90614 * 8 7 6 11 11 C 1.53116 * 109.15636 * 177.59499 * 10 8 7 12 12 C 1.53033 * 109.28247 * 302.34270 * 11 10 8 13 13 N 1.46850 * 109.51910 * 59.18394 * 12 11 10 14 14 C 1.46906 * 110.99842 * 174.16001 * 13 12 11 15 15 C 1.52990 * 109.47121 * 199.98473 * 14 13 12 16 16 H 1.09001 * 109.47413 * 304.65313 * 15 14 13 17 17 C 1.47206 * 109.47237 * 64.65530 * 15 14 13 18 18 N 9.91193 * 157.33162 * 327.99734 * 3 1 2 19 19 C 1.52999 * 109.47275 * 184.65384 * 15 14 13 20 20 C 1.50696 * 109.47504 * 174.99957 * 19 15 14 21 21 H 1.08001 * 119.99899 * 0.02562 * 20 19 15 22 22 C 1.37880 * 120.00483 * 179.97438 * 20 19 15 23 23 N 1.31514 * 119.99684 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00224 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46657 * 90.00757 * 24 22 20 26 26 H 1.48498 * 109.47210 * 210.00014 * 24 22 20 27 27 H 1.48494 * 109.47197 * 330.00565 * 24 22 20 28 28 C 1.46848 * 111.19927 * 298.25349 * 13 12 11 29 29 N 1.40210 * 106.83059 * 359.62096 * 7 6 5 30 30 N 1.28763 * 108.38147 * 0.24575 * 29 7 6 31 31 H 1.08991 * 109.47011 * 299.99890 * 1 2 3 32 32 H 1.08991 * 109.46795 * 59.99893 * 1 2 3 33 33 H 1.09002 * 109.46537 * 179.97438 * 1 2 3 34 34 H 1.07999 * 126.58384 * 0.02562 * 6 5 3 35 35 H 1.08999 * 109.52121 * 297.49901 * 10 8 7 36 36 H 1.08995 * 109.52000 * 57.62922 * 10 8 7 37 37 H 1.09005 * 109.50914 * 62.29098 * 11 10 8 38 38 H 1.09003 * 109.50193 * 182.40011 * 11 10 8 39 39 H 1.08996 * 109.46371 * 299.17078 * 12 11 10 40 40 H 1.09004 * 109.46293 * 179.19574 * 12 11 10 41 41 H 1.09010 * 109.46628 * 79.98458 * 14 13 12 42 42 H 1.09000 * 109.47408 * 319.99180 * 14 13 12 43 43 H 1.09004 * 109.46897 * 55.00229 * 19 15 14 44 44 H 1.08999 * 109.47479 * 295.00463 * 19 15 14 45 45 H 0.97001 * 120.00205 * 179.97438 * 23 22 20 46 46 H 1.08999 * 109.46479 * 181.76135 * 28 13 12 47 47 H 1.08998 * 109.46514 * 301.74313 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2198 -0.0005 5 6 3.5356 1.2777 0.0006 6 6 4.2756 2.4268 0.0065 7 7 5.5715 2.0565 0.0014 8 6 6.7343 2.9477 0.0025 9 1 7.5897 2.4314 -0.4332 10 6 6.4194 4.1998 -0.8207 11 6 7.6170 5.1523 -0.7647 12 6 7.9198 5.4981 0.6949 13 7 8.2152 4.2675 1.4397 14 6 8.6455 4.5724 2.8108 15 6 9.4031 3.3741 3.3859 16 1 8.7784 2.4833 3.3196 17 6 10.6419 3.1628 2.6192 18 7 11.5986 2.9995 2.0245 19 6 9.7503 3.6455 4.8511 20 6 10.3868 2.4190 5.4521 21 1 10.5300 1.5344 4.8493 22 6 10.7876 2.4263 6.7714 23 7 10.6137 3.5036 7.5054 24 14 11.5760 0.9056 7.5166 25 1 13.0477 0.9683 7.3280 26 1 11.2650 0.8473 8.9675 27 1 11.0423 -0.3074 6.8467 28 6 7.0627 3.3574 1.4400 29 7 5.5932 0.6546 0.0011 30 7 4.3777 0.2297 0.0006 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8899 33 1 -0.3632 -1.0277 -0.0005 34 1 3.8950 3.4375 0.0120 35 1 6.2273 3.9166 -1.8556 36 1 5.5398 4.6946 -0.4091 37 1 8.4864 4.6707 -1.2125 38 1 7.3826 6.0643 -1.3138 39 1 7.0551 5.9921 1.1380 40 1 8.7810 6.1649 0.7391 41 1 7.7714 4.7800 3.4282 42 1 9.2989 5.4448 2.8011 43 1 8.8410 3.8893 5.4007 44 1 10.4462 4.4823 4.9106 45 1 10.8953 3.5087 8.4336 46 1 7.3013 2.4694 2.0253 47 1 6.2019 3.8615 1.8794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368847780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:44 Heat of formation + Delta-G solvation = 14.860430 kcal Electronic energy + Delta-G solvation = -29916.410706 eV Core-core repulsion = 25714.667980 eV Total energy + Delta-G solvation = -4201.742727 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -43.45202 -41.22232 -40.35829 -38.11033 -37.55263 -36.18168 -35.43301 -34.22448 -32.60700 -32.35689 -31.01878 -28.69376 -28.67938 -26.01982 -25.54801 -24.88305 -23.89531 -23.18123 -22.73671 -22.00231 -20.68769 -19.38709 -18.55714 -18.25627 -18.15822 -17.64360 -17.48312 -16.83702 -16.64508 -16.36563 -15.92663 -15.82235 -15.60541 -15.12142 -14.93852 -14.68677 -14.57345 -14.29014 -14.23396 -14.16935 -13.70151 -13.65122 -13.44321 -13.21029 -13.02882 -12.93690 -12.81575 -12.75928 -12.55939 -12.51489 -12.40507 -12.09105 -11.88948 -11.81522 -11.81086 -11.78770 -11.62299 -11.45315 -11.32593 -11.02118 -10.56999 -10.51239 -9.33203 -8.21695 -6.29209 -0.03144 0.34931 0.84075 1.37788 1.40370 1.49204 1.63728 1.87156 2.06124 2.13295 2.39525 2.81459 3.10194 3.14084 3.22997 3.33718 3.53281 3.66177 3.75745 3.84875 4.01256 4.09755 4.14623 4.25111 4.30419 4.31384 4.38272 4.47027 4.48863 4.54582 4.64506 4.74288 4.75572 4.82006 4.84577 4.89629 4.94734 5.05542 5.13017 5.20522 5.30607 5.38186 5.44919 5.60441 5.77208 5.94011 6.11152 6.20265 6.48951 6.81971 6.86085 6.93611 7.39382 8.88955 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010194 B = 0.002515 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.031394 B =11128.325298 C =12845.594496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.562 3.438 4 O -0.519 6.519 5 C -0.115 4.115 6 C 0.128 3.872 7 N -0.339 5.339 8 C 0.152 3.848 9 H 0.112 0.888 10 C -0.124 4.124 11 C -0.105 4.105 12 C 0.046 3.954 13 N -0.549 5.549 14 C 0.076 3.924 15 C 0.021 3.979 16 H 0.106 0.894 17 C 0.266 3.734 18 N -0.513 5.513 19 C 0.038 3.962 20 C -0.539 4.539 21 H 0.050 0.950 22 C 0.014 3.986 23 N -0.921 5.921 24 Si 0.943 3.057 25 H -0.283 1.283 26 H -0.278 1.278 27 H -0.268 1.268 28 C 0.045 3.955 29 N -0.086 5.086 30 N -0.210 5.210 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.129 0.871 34 H 0.244 0.756 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.106 0.894 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.035 0.965 44 H 0.005 0.995 45 H 0.264 0.736 46 H 0.071 0.929 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.430 4.731 -18.485 27.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.405 3.595 4 O -0.408 6.408 5 C -0.253 4.253 6 C -0.031 4.031 7 N -0.122 5.122 8 C 0.051 3.949 9 H 0.130 0.870 10 C -0.163 4.163 11 C -0.143 4.143 12 C -0.080 4.080 13 N -0.274 5.274 14 C -0.053 4.053 15 C -0.001 4.001 16 H 0.124 0.876 17 C -0.050 4.050 18 N -0.190 5.190 19 C 0.000 4.000 20 C -0.578 4.578 21 H 0.068 0.932 22 C -0.185 4.185 23 N -0.561 5.561 24 Si 0.769 3.231 25 H -0.209 1.209 26 H -0.203 1.203 27 H -0.192 1.192 28 C -0.084 4.084 29 N -0.066 5.066 30 N -0.083 5.083 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.148 0.852 34 H 0.260 0.740 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.084 0.916 38 H 0.124 0.876 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.053 0.947 44 H 0.024 0.976 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.889 3.356 -19.460 26.645 hybrid contribution -0.761 0.231 1.567 1.758 sum -18.650 3.587 -17.892 26.092 Atomic orbital electron populations 1.23663 0.73619 1.05969 1.03165 1.86641 1.25648 1.31381 1.83368 1.19432 0.86164 0.81912 0.71948 1.90861 1.65956 1.36216 1.47743 1.20473 0.92730 0.90352 1.21749 1.23806 0.83052 1.02030 0.94164 1.50864 1.07019 1.07159 1.47158 1.21888 0.84603 0.90082 0.98294 0.86951 1.22089 1.00956 0.92711 1.00530 1.21524 0.97096 1.00032 0.95659 1.22325 1.01553 0.90101 0.94069 1.61724 1.34462 1.16148 1.15058 1.22058 0.99355 0.96020 0.87842 1.19163 0.86725 1.00948 0.93218 0.87630 1.29393 0.94033 0.90927 0.90643 1.81088 1.13026 1.11116 1.13802 1.18985 0.97014 0.95784 0.88256 1.21541 1.39986 0.99989 0.96245 0.93198 1.25655 0.96368 0.98570 0.97928 1.70010 1.48327 1.29261 1.08482 0.85769 0.78659 0.80642 0.77993 1.20871 1.20273 1.19198 1.22421 0.93422 0.98079 0.94473 1.82154 1.13305 0.87985 1.23110 1.74782 0.97197 1.26979 1.09389 0.91306 0.91048 0.85242 0.73972 0.89252 0.88342 0.91626 0.87584 0.92359 0.90047 0.90610 0.89425 0.94686 0.97625 0.92678 0.91042 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.57 113.37 1.20 1.54 16 2 O -0.36 -7.34 10.57 -56.59 -0.60 -7.94 16 3 C 0.56 12.25 7.96 70.23 0.56 12.81 16 4 O -0.52 -11.82 16.65 19.78 0.33 -11.49 16 5 C -0.12 -2.53 7.02 40.79 0.29 -2.24 16 6 C 0.13 1.97 10.40 83.87 0.87 2.84 16 7 N -0.34 -6.20 3.54 -326.23 -1.16 -7.36 16 8 C 0.15 2.28 3.39 45.05 0.15 2.43 16 9 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 10 C -0.12 -0.99 4.99 30.68 0.15 -0.83 16 11 C -0.10 -0.94 6.09 30.64 0.19 -0.75 16 12 C 0.05 0.59 5.43 86.32 0.47 1.06 16 13 N -0.55 -10.62 4.28 -896.35 -3.83 -14.46 16 14 C 0.08 1.82 4.37 86.30 0.38 2.20 16 15 C 0.02 0.73 2.27 -12.60 -0.03 0.70 16 16 H 0.11 3.49 6.71 -2.39 -0.02 3.47 16 17 C 0.27 10.56 13.67 89.42 1.22 11.78 16 18 N -0.51 -22.40 18.55 20.04 0.37 -22.03 16 19 C 0.04 1.71 4.42 29.85 0.13 1.85 16 20 C -0.54 -28.44 8.60 25.60 0.22 -28.22 16 21 H 0.05 2.65 7.59 -2.91 -0.02 2.62 16 22 C 0.01 0.76 5.46 84.66 0.46 1.22 16 23 N -0.92 -52.30 13.29 21.45 0.28 -52.02 16 24 Si 0.94 43.64 29.54 68.60 2.03 45.67 16 25 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 27 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 28 C 0.05 0.79 4.90 86.33 0.42 1.22 16 29 N -0.09 -2.25 13.78 37.02 0.51 -1.74 16 30 N -0.21 -5.67 12.39 -50.04 -0.62 -6.29 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.24 1.61 7.29 -2.91 -0.02 1.59 16 35 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.10 0.37 7.11 -2.39 -0.02 0.36 16 37 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.08 1.12 7.93 -2.38 -0.02 1.10 16 41 H 0.08 1.60 8.00 -2.38 -0.02 1.58 16 42 H 0.09 2.08 7.79 -2.39 -0.02 2.06 16 43 H 0.03 1.57 8.14 -2.38 -0.02 1.56 16 44 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 46 H 0.07 1.61 6.65 -2.39 -0.02 1.60 16 47 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -73.20 400.37 4.99 -68.21 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: 0.99 Total: 1.85 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 6.68 Total: 7.60 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -4.44 Total: -103.89 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.27 Total: -19.43 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -73.20 4.99 -68.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368847780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.069 kcal (2) G-P(sol) polarization free energy of solvation -73.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds