Wall clock time and date at job start Wed Apr 1 2020 06:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34758 * 116.99942 * 2 1 4 4 O 1.21516 * 119.99688 * 359.97438 * 3 2 1 5 5 C 1.47385 * 119.99771 * 180.02562 * 3 2 1 6 6 C 1.36669 * 125.77644 * 180.30295 * 5 3 2 7 7 N 1.34780 * 106.83309 * 180.14614 * 6 5 3 8 8 C 1.46498 * 126.58505 * 179.88541 * 7 6 5 9 9 H 1.09004 * 109.53771 * 204.80761 * 8 7 6 10 10 C 1.53121 * 109.50749 * 324.90873 * 8 7 6 11 11 C 1.53112 * 109.16586 * 177.59578 * 10 8 7 12 12 C 1.53038 * 109.27676 * 302.34580 * 11 10 8 13 13 N 1.46843 * 109.52552 * 59.17645 * 12 11 10 14 14 C 1.46902 * 111.00158 * 174.16016 * 13 12 11 15 15 C 1.52999 * 109.47028 * 294.21263 * 14 13 12 16 16 H 1.08997 * 109.47394 * 54.99653 * 15 14 13 17 17 C 1.47205 * 109.47362 * 294.99962 * 15 14 13 18 18 N 8.82925 * 167.73945 * 285.73373 * 5 1 2 19 19 C 1.53006 * 109.47054 * 175.00112 * 15 14 13 20 20 C 1.50698 * 109.47184 * 185.00283 * 19 15 14 21 21 H 1.08005 * 119.99819 * 359.97438 * 20 19 15 22 22 C 1.37875 * 120.00046 * 180.02562 * 20 19 15 23 23 N 1.31520 * 119.99809 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99912 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47123 * 90.00333 * 24 22 20 26 26 H 1.48506 * 109.46940 * 210.00455 * 24 22 20 27 27 H 1.48493 * 109.47121 * 329.99876 * 24 22 20 28 28 C 1.46842 * 111.19806 * 298.26124 * 13 12 11 29 29 N 1.40200 * 106.83043 * 359.62133 * 7 6 5 30 30 N 1.28762 * 108.38331 * 0.24082 * 29 7 6 31 31 H 1.08995 * 109.47489 * 60.00116 * 1 2 3 32 32 H 1.09002 * 109.47067 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47691 * 300.00025 * 1 2 3 34 34 H 1.08006 * 126.58613 * 0.02562 * 6 5 3 35 35 H 1.09001 * 109.52270 * 297.50349 * 10 8 7 36 36 H 1.08997 * 109.52054 * 57.62032 * 10 8 7 37 37 H 1.08994 * 109.50750 * 62.28384 * 11 10 8 38 38 H 1.08997 * 109.50646 * 182.36606 * 11 10 8 39 39 H 1.09005 * 109.46460 * 299.15776 * 12 11 10 40 40 H 1.09000 * 109.46243 * 179.19498 * 12 11 10 41 41 H 1.09003 * 109.47353 * 174.21262 * 14 13 12 42 42 H 1.08997 * 109.46829 * 54.21329 * 14 13 12 43 43 H 1.09001 * 109.47002 * 304.99688 * 19 15 14 44 44 H 1.08993 * 109.46955 * 65.00125 * 19 15 14 45 45 H 0.97004 * 119.99097 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.46139 * 181.75831 * 28 13 12 47 47 H 1.09000 * 109.46280 * 301.73327 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4018 2.2198 -0.0005 5 6 3.5355 1.2778 -0.0006 6 6 4.2754 2.4269 0.0052 7 7 5.5714 2.0566 -0.0010 8 6 6.7341 2.9478 -0.0005 9 1 7.5892 2.4317 -0.4369 10 6 6.4187 4.2003 -0.8230 11 6 7.6162 5.1528 -0.7677 12 6 7.9201 5.4981 0.6920 13 7 8.2159 4.2672 1.4361 14 6 8.6473 4.5717 2.8070 15 6 9.9863 5.3109 2.7680 16 1 9.8959 6.1934 2.1348 17 6 11.0231 4.4197 2.2224 18 7 11.8225 3.7331 1.8030 19 6 10.3747 5.7375 4.1851 20 6 11.6293 6.5708 4.1328 21 1 12.1026 6.7752 3.1837 22 6 12.1736 7.0712 5.2965 23 7 13.2688 7.7980 5.2507 24 14 11.3554 6.7171 6.9380 25 1 11.9131 5.4648 7.5090 26 1 11.6107 7.8435 7.8715 27 1 9.8922 6.5616 6.7384 28 6 7.0635 3.3572 1.4368 29 7 5.5931 0.6548 -0.0018 30 7 4.3776 0.2299 -0.0015 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 3.8948 3.4376 0.0114 35 1 6.2257 3.9174 -1.8578 36 1 5.5392 4.6949 -0.4106 37 1 8.4851 4.6714 -1.2161 38 1 7.3816 6.0647 -1.3167 39 1 7.0557 5.9920 1.1359 40 1 8.7812 6.1649 0.7357 41 1 8.7609 3.6433 3.3668 42 1 7.8997 5.1993 3.2921 43 1 9.5668 6.3245 4.6221 44 1 10.5518 4.8521 4.7954 45 1 13.6514 8.1504 6.0695 46 1 7.3026 2.4690 2.0217 47 1 6.2031 3.8611 1.8771 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368847782.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:56 Heat of formation + Delta-G solvation = 41.715745 kcal Electronic energy + Delta-G solvation = -29665.737433 eV Core-core repulsion = 25465.159240 eV Total energy + Delta-G solvation = -4200.578193 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.74629 -40.52091 -39.66032 -36.94744 -36.84596 -35.17854 -33.85063 -32.96903 -31.73805 -31.55522 -30.29123 -28.17732 -27.61370 -25.30082 -24.41891 -24.20961 -22.92251 -21.83572 -21.54429 -21.28755 -20.12096 -18.69725 -17.48249 -17.08952 -17.00622 -16.89794 -16.66465 -16.13945 -15.85266 -15.29533 -15.00074 -14.83407 -14.63000 -14.33051 -13.99834 -13.94642 -13.63151 -13.41023 -13.24795 -13.11583 -12.81083 -12.56561 -12.39671 -12.32457 -12.14498 -11.85815 -11.85141 -11.55151 -11.41213 -11.27576 -11.25513 -11.20721 -11.18044 -11.11943 -10.80934 -10.68240 -10.30968 -10.05997 -9.89409 -9.76297 -9.40465 -8.68547 -8.60753 -6.17102 -4.18397 0.60608 1.13265 1.46088 2.25728 2.60199 3.21693 3.28442 3.30189 3.49482 3.63427 3.70483 3.78136 3.78832 4.10979 4.22291 4.32015 4.37624 4.40440 4.58966 4.67946 4.69882 4.70848 4.75970 4.79331 4.97258 5.05684 5.08608 5.15236 5.17377 5.18837 5.23864 5.40078 5.42314 5.45697 5.54051 5.64137 5.75755 5.86206 5.86918 5.90852 6.05258 6.18090 6.72450 6.78767 6.84591 7.01458 7.19850 7.55755 7.59087 8.33024 8.45485 8.85854 9.42439 10.95803 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017661 B = 0.002009 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.074346 B =13931.802302 C =14518.211994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.340 6.340 3 C 0.560 3.440 4 O -0.506 6.506 5 C -0.096 4.096 6 C 0.107 3.893 7 N -0.346 5.346 8 C 0.150 3.850 9 H 0.128 0.872 10 C -0.132 4.132 11 C -0.111 4.111 12 C 0.041 3.959 13 N -0.535 5.535 14 C 0.062 3.938 15 C 0.021 3.979 16 H 0.107 0.893 17 C 0.250 3.750 18 N -0.466 5.466 19 C -0.005 4.005 20 C -0.529 4.529 21 H 0.074 0.926 22 C 0.072 3.928 23 N -0.895 5.895 24 Si 0.877 3.123 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.264 1.264 28 C 0.049 3.951 29 N -0.052 5.052 30 N -0.185 5.185 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.206 0.794 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.042 0.958 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.058 0.942 43 H 0.037 0.963 44 H 0.021 0.979 45 H 0.265 0.735 46 H 0.089 0.911 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.321 -8.249 -12.037 29.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.255 6.255 3 C 0.402 3.598 4 O -0.393 6.393 5 C -0.233 4.233 6 C -0.051 4.051 7 N -0.129 5.129 8 C 0.049 3.951 9 H 0.146 0.854 10 C -0.171 4.171 11 C -0.150 4.150 12 C -0.087 4.087 13 N -0.260 5.260 14 C -0.066 4.066 15 C -0.001 4.001 16 H 0.125 0.875 17 C -0.067 4.067 18 N -0.143 5.143 19 C -0.044 4.044 20 C -0.567 4.567 21 H 0.092 0.908 22 C -0.131 4.131 23 N -0.533 5.533 24 Si 0.704 3.296 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.188 1.188 28 C -0.081 4.081 29 N -0.032 5.032 30 N -0.059 5.059 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.084 0.916 34 H 0.223 0.777 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.061 0.939 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.040 0.960 45 H 0.075 0.925 46 H 0.107 0.893 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -22.908 -10.364 -12.801 28.214 hybrid contribution -1.898 1.571 1.579 2.926 sum -24.806 -8.793 -11.222 28.611 Atomic orbital electron populations 1.23358 0.75566 1.04112 1.02746 1.86648 1.23595 1.31553 1.83691 1.19422 0.86141 0.81856 0.72347 1.90888 1.65700 1.35971 1.46777 1.20178 0.92530 0.89807 1.20828 1.23266 0.84034 1.01231 0.96578 1.50804 1.06240 1.07961 1.47911 1.21830 0.85245 0.89472 0.98592 0.85417 1.22074 1.00408 0.94249 1.00361 1.21548 0.97358 0.99153 0.96913 1.22340 1.01502 0.91558 0.93258 1.61830 1.33208 1.14805 1.16154 1.22285 0.95837 1.00995 0.87523 1.18993 0.86807 0.93918 1.00346 0.87517 1.28585 0.93245 0.92950 0.91946 1.80945 1.10937 1.11476 1.10924 1.19651 0.98480 0.97149 0.89159 1.20989 1.08276 1.31899 0.95531 0.90753 1.24990 0.94568 0.94417 0.99094 1.69906 1.20282 1.34675 1.28420 0.86824 0.80494 0.78223 0.84019 1.20205 1.21221 1.18811 1.22357 0.93364 0.98391 0.93941 1.82177 1.13273 0.86176 1.21576 1.74809 0.96692 1.25687 1.08741 0.91636 0.87685 0.91609 0.77731 0.90242 0.90710 0.90119 0.89860 0.93935 0.88727 0.89844 0.92392 0.94519 0.96040 0.92504 0.89308 0.93675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.28 16 2 O -0.34 -3.31 10.57 -40.65 -0.43 -3.74 16 3 C 0.56 5.87 7.96 34.45 0.27 6.15 16 4 O -0.51 -5.79 16.65 -19.28 -0.32 -6.11 16 5 C -0.10 -1.01 7.02 -83.57 -0.59 -1.59 16 6 C 0.11 0.86 10.40 -16.82 -0.17 0.68 16 7 N -0.35 -3.07 3.54 -54.47 -0.19 -3.26 16 8 C 0.15 1.13 3.39 -67.85 -0.23 0.90 16 9 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 10 C -0.13 -0.73 4.99 -26.61 -0.13 -0.86 16 11 C -0.11 -0.71 6.09 -26.65 -0.16 -0.87 16 12 C 0.04 0.34 5.30 -3.84 -0.02 0.32 16 13 N -0.54 -5.39 4.36 -234.67 -1.02 -6.41 16 14 C 0.06 0.73 4.32 -3.82 -0.02 0.72 16 15 C 0.02 0.34 2.14 -93.40 -0.20 0.14 16 16 H 0.11 1.58 6.22 -51.93 -0.32 1.25 16 17 C 0.25 4.79 13.66 -20.82 -0.28 4.51 16 18 N -0.47 -10.01 18.53 42.08 0.78 -9.23 16 19 C -0.01 -0.11 3.49 -27.88 -0.10 -0.21 16 20 C -0.53 -13.66 9.15 -34.44 -0.32 -13.97 16 21 H 0.07 2.11 7.84 -52.48 -0.41 1.70 16 22 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 23 N -0.90 -26.33 13.96 55.43 0.77 -25.56 16 24 Si 0.88 20.05 27.47 -169.99 -4.67 15.38 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.26 -5.52 6.54 56.52 0.37 -5.15 16 28 C 0.05 0.41 5.07 -3.84 -0.02 0.39 16 29 N -0.05 -0.61 13.78 60.35 0.83 0.22 16 30 N -0.18 -2.27 12.39 32.83 0.41 -1.87 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.21 0.99 7.29 -52.48 -0.38 0.61 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.32 7.11 -51.93 -0.37 -0.05 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.88 6.12 -51.93 -0.32 0.56 16 41 H 0.08 1.00 7.99 -51.93 -0.41 0.59 16 42 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 43 H 0.04 0.69 7.20 -51.93 -0.37 0.32 16 44 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 45 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.09 0.85 8.02 -51.93 -0.42 0.43 16 47 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 396.07 15.07 5.97 5.97 Total: -1.00 -33.78 396.07 -5.66 -39.45 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -6.79 Total: -4.28 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -1.00 Total: -0.56 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 1.58 Total: -46.11 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.75 Total: -9.85 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.67 Total: 15.38 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.78 -5.66 -39.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368847782.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.165 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds