Wall clock time and date at job start Wed Apr 1 2020 06:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34758 * 116.99942 * 2 1 4 4 O 1.21516 * 119.99688 * 359.97438 * 3 2 1 5 5 C 1.47385 * 119.99771 * 180.02562 * 3 2 1 6 6 C 1.36669 * 125.77644 * 180.30295 * 5 3 2 7 7 N 1.34780 * 106.83309 * 180.14614 * 6 5 3 8 8 C 1.46498 * 126.58505 * 179.88541 * 7 6 5 9 9 H 1.09004 * 109.53771 * 204.80761 * 8 7 6 10 10 C 1.53121 * 109.50749 * 324.90873 * 8 7 6 11 11 C 1.53112 * 109.16586 * 177.59578 * 10 8 7 12 12 C 1.53038 * 109.27676 * 302.34580 * 11 10 8 13 13 N 1.46843 * 109.52552 * 59.17645 * 12 11 10 14 14 C 1.46902 * 111.00158 * 174.16016 * 13 12 11 15 15 C 1.52999 * 109.47028 * 294.21263 * 14 13 12 16 16 H 1.08997 * 109.47394 * 54.99653 * 15 14 13 17 17 C 1.47205 * 109.47362 * 294.99962 * 15 14 13 18 18 N 8.82925 * 167.73945 * 285.73373 * 5 1 2 19 19 C 1.53006 * 109.47054 * 175.00112 * 15 14 13 20 20 C 1.50698 * 109.47184 * 185.00283 * 19 15 14 21 21 H 1.08005 * 119.99819 * 359.97438 * 20 19 15 22 22 C 1.37875 * 120.00046 * 180.02562 * 20 19 15 23 23 N 1.31520 * 119.99809 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99912 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47123 * 90.00333 * 24 22 20 26 26 H 1.48506 * 109.46940 * 210.00455 * 24 22 20 27 27 H 1.48493 * 109.47121 * 329.99876 * 24 22 20 28 28 C 1.46842 * 111.19806 * 298.26124 * 13 12 11 29 29 N 1.40200 * 106.83043 * 359.62133 * 7 6 5 30 30 N 1.28762 * 108.38331 * 0.24082 * 29 7 6 31 31 H 1.08995 * 109.47489 * 60.00116 * 1 2 3 32 32 H 1.09002 * 109.47067 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47691 * 300.00025 * 1 2 3 34 34 H 1.08006 * 126.58613 * 0.02562 * 6 5 3 35 35 H 1.09001 * 109.52270 * 297.50349 * 10 8 7 36 36 H 1.08997 * 109.52054 * 57.62032 * 10 8 7 37 37 H 1.08994 * 109.50750 * 62.28384 * 11 10 8 38 38 H 1.08997 * 109.50646 * 182.36606 * 11 10 8 39 39 H 1.09005 * 109.46460 * 299.15776 * 12 11 10 40 40 H 1.09000 * 109.46243 * 179.19498 * 12 11 10 41 41 H 1.09003 * 109.47353 * 174.21262 * 14 13 12 42 42 H 1.08997 * 109.46829 * 54.21329 * 14 13 12 43 43 H 1.09001 * 109.47002 * 304.99688 * 19 15 14 44 44 H 1.08993 * 109.46955 * 65.00125 * 19 15 14 45 45 H 0.97004 * 119.99097 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.46139 * 181.75831 * 28 13 12 47 47 H 1.09000 * 109.46280 * 301.73327 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4018 2.2198 -0.0005 5 6 3.5355 1.2778 -0.0006 6 6 4.2754 2.4269 0.0052 7 7 5.5714 2.0566 -0.0010 8 6 6.7341 2.9478 -0.0005 9 1 7.5892 2.4317 -0.4369 10 6 6.4187 4.2003 -0.8230 11 6 7.6162 5.1528 -0.7677 12 6 7.9201 5.4981 0.6920 13 7 8.2159 4.2672 1.4361 14 6 8.6473 4.5717 2.8070 15 6 9.9863 5.3109 2.7680 16 1 9.8959 6.1934 2.1348 17 6 11.0231 4.4197 2.2224 18 7 11.8225 3.7331 1.8030 19 6 10.3747 5.7375 4.1851 20 6 11.6293 6.5708 4.1328 21 1 12.1026 6.7752 3.1837 22 6 12.1736 7.0712 5.2965 23 7 13.2688 7.7980 5.2507 24 14 11.3554 6.7171 6.9380 25 1 11.9131 5.4648 7.5090 26 1 11.6107 7.8435 7.8715 27 1 9.8922 6.5616 6.7384 28 6 7.0635 3.3572 1.4368 29 7 5.5931 0.6548 -0.0018 30 7 4.3776 0.2299 -0.0015 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 3.8948 3.4376 0.0114 35 1 6.2257 3.9174 -1.8578 36 1 5.5392 4.6949 -0.4106 37 1 8.4851 4.6714 -1.2161 38 1 7.3816 6.0647 -1.3167 39 1 7.0557 5.9920 1.1359 40 1 8.7812 6.1649 0.7357 41 1 8.7609 3.6433 3.3668 42 1 7.8997 5.1993 3.2921 43 1 9.5668 6.3245 4.6221 44 1 10.5518 4.8521 4.7954 45 1 13.6514 8.1504 6.0695 46 1 7.3026 2.4690 2.0217 47 1 6.2031 3.8611 1.8771 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368847782.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:55 Heat of formation + Delta-G solvation = 18.404800 kcal Electronic energy + Delta-G solvation = -29666.748271 eV Core-core repulsion = 25465.159240 eV Total energy + Delta-G solvation = -4201.589031 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.47079 -41.23341 -40.39412 -38.20600 -37.56513 -36.25467 -35.34817 -34.15353 -32.95343 -32.37077 -31.00616 -29.04692 -28.67925 -26.13330 -25.30709 -24.93377 -23.66610 -23.28316 -22.59336 -22.00211 -20.71761 -19.40837 -18.88543 -18.23575 -18.14193 -17.67244 -17.50279 -16.84778 -16.72961 -16.17697 -15.95782 -15.81073 -15.55069 -15.16467 -14.93570 -14.73650 -14.59466 -14.54281 -14.31846 -14.16456 -13.88936 -13.67529 -13.45985 -13.25741 -13.13262 -12.94857 -12.84422 -12.76844 -12.58692 -12.45291 -12.01038 -11.90246 -11.88064 -11.82024 -11.80319 -11.73134 -11.67222 -11.56388 -11.26262 -11.13086 -10.72947 -10.52956 -9.31218 -8.23859 -6.29200 -0.04699 0.33195 0.81491 1.43859 1.44544 1.55027 1.62443 1.85621 2.08657 2.15524 2.41182 2.80293 3.08688 3.13065 3.21646 3.32850 3.53433 3.66330 3.74208 3.85261 3.91964 4.11625 4.14262 4.24254 4.30269 4.31292 4.37540 4.45402 4.48483 4.54328 4.61177 4.70013 4.74557 4.75339 4.82281 4.87729 4.93696 5.04389 5.17567 5.19792 5.26166 5.28975 5.38936 5.45074 5.64431 5.96571 6.10724 6.27117 6.47748 6.78721 6.84294 6.93310 7.35283 8.92801 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017661 B = 0.002009 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.074346 B =13931.802302 C =14518.211994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.562 3.438 4 O -0.519 6.519 5 C -0.115 4.115 6 C 0.128 3.872 7 N -0.339 5.339 8 C 0.152 3.848 9 H 0.112 0.888 10 C -0.124 4.124 11 C -0.107 4.107 12 C 0.037 3.963 13 N -0.552 5.552 14 C 0.072 3.928 15 C 0.026 3.974 16 H 0.120 0.880 17 C 0.262 3.738 18 N -0.516 5.516 19 C -0.004 4.004 20 C -0.528 4.528 21 H 0.030 0.970 22 C 0.003 3.997 23 N -0.953 5.953 24 Si 0.945 3.055 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.221 1.221 28 C 0.054 3.946 29 N -0.085 5.085 30 N -0.209 5.209 31 H 0.070 0.930 32 H 0.130 0.870 33 H 0.069 0.931 34 H 0.243 0.757 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.103 0.897 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.023 0.977 45 H 0.264 0.736 46 H 0.073 0.927 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.088 -7.724 -11.604 32.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.405 3.595 4 O -0.408 6.408 5 C -0.252 4.252 6 C -0.030 4.030 7 N -0.122 5.122 8 C 0.051 3.949 9 H 0.130 0.870 10 C -0.163 4.163 11 C -0.145 4.145 12 C -0.090 4.090 13 N -0.277 5.277 14 C -0.057 4.057 15 C 0.005 3.995 16 H 0.138 0.862 17 C -0.054 4.054 18 N -0.193 5.193 19 C -0.043 4.043 20 C -0.566 4.566 21 H 0.048 0.952 22 C -0.194 4.194 23 N -0.594 5.594 24 Si 0.768 3.232 25 H -0.206 1.206 26 H -0.217 1.217 27 H -0.143 1.143 28 C -0.075 4.075 29 N -0.065 5.065 30 N -0.083 5.083 31 H 0.089 0.911 32 H 0.148 0.852 33 H 0.087 0.913 34 H 0.259 0.741 35 H 0.105 0.895 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.121 0.879 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.042 0.958 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -26.700 -9.872 -12.394 31.048 hybrid contribution -0.692 1.424 1.336 2.072 sum -27.392 -8.447 -11.058 30.724 Atomic orbital electron populations 1.23664 0.73621 1.05990 1.03163 1.86637 1.25637 1.31377 1.83384 1.19449 0.86195 0.81906 0.71974 1.90868 1.65968 1.36253 1.47691 1.20452 0.92682 0.90347 1.21750 1.23809 0.83071 1.02035 0.94116 1.50849 1.06969 1.07160 1.47187 1.21875 0.84546 0.89953 0.98524 0.86981 1.22075 1.00820 0.92802 1.00570 1.21516 0.97113 1.00037 0.95837 1.22429 1.01769 0.90626 0.94183 1.61700 1.34641 1.16073 1.15292 1.22114 0.93751 1.00857 0.88947 1.19110 0.88024 0.94410 0.97990 0.86242 1.29350 0.92868 0.92262 0.90907 1.80943 1.12483 1.13454 1.12469 1.19606 0.96442 0.96439 0.91861 1.21387 1.09981 1.31656 0.93595 0.95159 1.26023 0.95232 0.94392 1.03751 1.70092 1.22769 1.37107 1.29442 0.85743 0.81766 0.77362 0.78294 1.20571 1.21718 1.14309 1.22284 0.93342 0.97606 0.94267 1.82136 1.13297 0.87930 1.23150 1.74779 0.97178 1.26931 1.09387 0.91148 0.85200 0.91252 0.74052 0.89452 0.88226 0.91901 0.87884 0.91770 0.90156 0.90043 0.89557 0.91573 0.95844 0.92745 0.90840 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -6.58 10.57 -56.69 -0.60 -7.18 16 3 C 0.56 11.04 7.96 70.23 0.56 11.60 16 4 O -0.52 -10.89 16.65 19.78 0.33 -10.56 16 5 C -0.11 -2.23 7.02 40.79 0.29 -1.94 16 6 C 0.13 1.67 10.40 83.87 0.87 2.55 16 7 N -0.34 -5.32 3.54 -326.25 -1.16 -6.47 16 8 C 0.15 1.95 3.39 45.04 0.15 2.10 16 9 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 10 C -0.12 -0.91 4.99 30.67 0.15 -0.75 16 11 C -0.11 -1.04 6.09 30.64 0.19 -0.85 16 12 C 0.04 0.49 5.30 86.33 0.46 0.94 16 13 N -0.55 -9.66 4.36 -896.37 -3.91 -13.56 16 14 C 0.07 1.47 4.32 86.30 0.37 1.84 16 15 C 0.03 0.79 2.14 -12.60 -0.03 0.77 16 16 H 0.12 3.33 6.22 -2.39 -0.01 3.31 16 17 C 0.26 10.05 13.66 89.46 1.22 11.27 16 18 N -0.52 -22.65 18.53 19.99 0.37 -22.28 16 19 C 0.00 -0.17 3.49 29.85 0.10 -0.06 16 20 C -0.53 -27.39 9.15 25.60 0.23 -27.16 16 21 H 0.03 1.78 7.84 -2.91 -0.02 1.76 16 22 C 0.00 0.15 5.47 84.65 0.46 0.61 16 23 N -0.95 -57.90 13.96 21.45 0.30 -57.60 16 24 Si 0.95 40.32 27.47 68.60 1.88 42.21 16 25 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 26 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 27 H -0.22 -7.85 6.54 99.48 0.65 -7.20 16 28 C 0.05 0.76 5.07 86.33 0.44 1.20 16 29 N -0.09 -1.98 13.78 37.02 0.51 -1.47 16 30 N -0.21 -5.06 12.39 -50.04 -0.62 -5.68 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.13 0.60 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.24 1.14 7.29 -2.91 -0.02 1.12 16 35 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.10 0.29 7.11 -2.39 -0.02 0.27 16 37 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.08 1.30 6.12 -2.39 -0.01 1.28 16 41 H 0.08 1.72 7.99 -2.39 -0.02 1.70 16 42 H 0.09 1.33 8.12 -2.39 -0.02 1.31 16 43 H 0.07 2.17 7.20 -2.39 -0.02 2.16 16 44 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 45 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 46 H 0.07 1.28 8.02 -2.39 -0.02 1.26 16 47 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -77.84 396.07 4.72 -73.12 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 0.94 Total: 5.87 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 6.67 Total: 3.60 kcal Atomic # 7 Polarization: -102.56 SS G_CDS: -4.50 Total: -107.06 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.27 Total: -17.74 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 1.88 Total: 42.21 kcal Total: -77.84 4.72 -73.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368847782.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.525 kcal (2) G-P(sol) polarization free energy of solvation -77.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds