Wall clock time and date at job start Wed Apr 1 2020 05:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35814 * 126.04849 * 2 1 4 4 C 1.35752 * 107.56020 * 180.02562 * 3 2 1 5 5 N 1.40770 * 126.08191 * 179.73867 * 4 3 2 6 6 C 1.46762 * 124.35113 * 179.72665 * 5 4 3 7 7 C 1.54655 * 105.37958 * 162.85411 * 6 5 4 8 8 C 1.54623 * 101.68814 * 25.76567 * 7 6 5 9 9 H 1.08999 * 110.60146 * 93.71907 * 8 7 6 10 10 N 1.46503 * 110.49053 * 216.30827 * 8 7 6 11 11 C 1.34767 * 120.00288 * 201.22965 * 10 8 7 12 12 O 1.21593 * 120.00309 * 0.02562 * 11 10 8 13 13 N 1.34776 * 120.00217 * 179.97438 * 11 10 8 14 14 C 1.46498 * 120.00313 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47276 * 178.29091 * 14 13 11 16 16 C 1.50693 * 115.55249 * 65.14502 * 15 14 13 17 17 H 1.08007 * 120.00020 * 265.40843 * 16 15 14 18 18 C 1.37873 * 120.00235 * 85.40386 * 16 15 14 19 19 N 1.31519 * 119.99982 * 353.56061 * 18 16 15 20 20 Si 1.86796 * 120.00276 * 173.55829 * 18 16 15 21 21 H 1.48505 * 109.47023 * 60.00259 * 20 18 16 22 22 H 1.48500 * 109.47228 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47348 * 300.00098 * 20 18 16 24 24 C 1.53005 * 117.49816 * 279.47304 * 15 14 13 25 25 C 1.53006 * 117.49828 * 210.82010 * 15 14 13 26 26 C 1.34417 * 124.34725 * 0.02562 * 5 4 3 27 27 O 1.21308 * 124.94376 * 0.38656 * 26 5 4 28 28 C 1.40249 * 107.84206 * 0.02562 * 4 3 2 29 29 N 1.30829 * 108.33694 * 359.97438 * 28 4 3 30 30 H 1.08994 * 109.47211 * 90.00074 * 1 2 3 31 31 H 1.09007 * 109.46835 * 210.00041 * 1 2 3 32 32 H 1.08995 * 109.47440 * 329.99508 * 1 2 3 33 33 H 1.08000 * 126.22132 * 0.06116 * 3 2 1 34 34 H 1.08998 * 110.24514 * 281.98071 * 6 5 4 35 35 H 1.08998 * 110.24657 * 43.98411 * 6 5 4 36 36 H 1.09000 * 111.19183 * 267.59195 * 7 6 5 37 37 H 1.09001 * 110.85496 * 143.79202 * 7 6 5 38 38 H 0.97004 * 119.99633 * 21.22884 * 10 8 7 39 39 H 0.96997 * 119.99947 * 0.02562 * 13 11 10 40 40 H 1.08995 * 109.47358 * 298.29328 * 14 13 11 41 41 H 1.09003 * 109.46722 * 58.29285 * 14 13 11 42 42 H 0.96998 * 120.00586 * 185.06517 * 19 18 16 43 43 H 1.09001 * 117.49757 * 0.02562 * 24 15 14 44 44 H 1.09001 * 117.50133 * 145.01732 * 24 15 14 45 45 H 1.08999 * 117.49537 * 214.97797 * 25 15 14 46 46 H 1.09005 * 117.49882 * 359.96741 * 25 15 14 47 47 H 1.08007 * 125.83762 * 180.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2642 1.0981 0.0000 4 6 3.5517 0.6676 -0.0006 5 7 4.6987 1.4836 -0.0060 6 6 6.0759 0.9765 -0.0006 7 6 6.9537 2.1683 -0.4489 8 6 6.0837 3.3745 -0.0260 9 1 6.3681 3.7233 0.9667 10 7 6.2023 4.4599 -1.0028 11 6 5.8965 5.7233 -0.6469 12 8 5.5227 5.9625 0.4851 13 7 6.0061 6.7218 -1.5455 14 6 5.6733 8.0951 -1.1588 15 6 5.9227 9.0327 -2.3417 16 6 5.0393 8.8132 -3.5427 17 1 5.3784 8.1879 -4.3555 18 6 3.7982 9.4104 -3.6040 19 7 3.3322 10.0668 -2.5639 20 14 2.7785 9.2875 -5.1642 21 1 2.5046 7.8593 -5.4653 22 1 1.4944 10.0090 -4.9745 23 1 3.5259 9.8969 -6.2934 24 6 7.3634 9.4804 -2.5968 25 6 6.3437 10.4698 -2.0276 26 6 4.6733 2.8276 -0.0109 27 8 3.6660 3.5035 -0.0046 28 6 3.5359 -0.7348 -0.0015 29 7 2.2894 -1.1324 -0.0010 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 1.9353 2.1268 0.0009 34 1 6.3555 0.6549 1.0026 35 1 6.1762 0.1500 -0.7042 36 1 7.1097 2.1590 -1.5276 37 1 7.9062 2.1695 0.0810 38 1 6.5009 4.2691 -1.9059 39 1 6.3047 6.5311 -2.4484 40 1 4.6238 8.1468 -0.8692 41 1 6.2976 8.3971 -0.3178 42 1 2.4305 10.4240 -2.5799 43 1 8.1335 9.1065 -1.9221 44 1 7.6722 9.6163 -3.6333 45 1 5.9819 11.2564 -2.6898 46 1 6.4424 10.7474 -0.9781 47 1 4.4043 -1.3770 -0.0018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373783492.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:27 Heat of formation + Delta-G solvation = 59.056091 kcal Electronic energy + Delta-G solvation = -30280.934230 eV Core-core repulsion = 26081.107971 eV Total energy + Delta-G solvation = -4199.826259 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.66668 -40.46538 -38.97305 -36.73885 -36.55062 -34.67739 -33.30369 -33.11199 -31.93757 -31.44879 -29.03868 -27.58576 -26.71853 -25.82363 -24.86356 -22.86348 -22.07168 -21.19054 -20.72721 -20.41483 -19.47540 -19.30261 -17.98898 -17.58209 -16.86691 -16.31885 -16.11321 -15.78357 -15.64441 -14.86320 -14.66657 -14.64499 -14.43580 -14.02399 -13.93803 -13.85541 -13.63003 -13.27106 -13.21652 -12.97526 -12.81085 -12.66773 -12.59239 -12.29427 -11.77775 -11.55387 -11.40495 -11.13241 -10.96815 -10.89364 -10.52367 -10.41345 -10.24843 -10.20476 -9.70706 -9.65053 -9.48539 -8.93893 -8.80355 -8.45775 -8.22489 -7.94442 -7.80001 -6.03702 -4.12390 1.60004 2.08353 2.15793 2.73799 2.93768 3.28356 3.29684 3.35497 3.36390 3.74992 4.09797 4.18818 4.37381 4.38469 4.53527 4.63387 4.73892 4.84257 4.89477 4.91263 5.12561 5.14825 5.24212 5.25796 5.37695 5.39730 5.42976 5.48990 5.64688 5.91221 6.06345 6.37479 6.50130 6.54420 6.60021 6.63445 6.71870 6.81445 6.88367 6.93249 7.11723 7.34565 7.41179 7.41924 7.52031 7.60215 7.84957 8.12253 8.37633 8.66544 8.87717 9.23331 9.54211 11.04144 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011760 B = 0.002684 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.368914 B =10429.884549 C =12053.412705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.374 5.374 3 C 0.040 3.960 4 C 0.010 3.990 5 N -0.542 5.542 6 C 0.107 3.893 7 C -0.137 4.137 8 C 0.146 3.854 9 H 0.126 0.874 10 N -0.737 5.737 11 C 0.702 3.298 12 O -0.590 6.590 13 N -0.718 5.718 14 C 0.183 3.817 15 C 0.029 3.971 16 C -0.502 4.502 17 H 0.059 0.941 18 C 0.075 3.925 19 N -0.873 5.873 20 Si 0.890 3.110 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.210 4.210 25 C -0.148 4.148 26 C 0.497 3.503 27 O -0.490 6.490 28 C 0.035 3.965 29 N -0.284 5.284 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.190 0.810 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.398 0.602 39 H 0.395 0.605 40 H 0.070 0.930 41 H 0.035 0.965 42 H 0.262 0.738 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.951 -22.135 4.287 23.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.159 5.159 3 C -0.107 4.107 4 C -0.092 4.092 5 N -0.271 5.271 6 C -0.016 4.016 7 C -0.175 4.175 8 C 0.035 3.965 9 H 0.143 0.857 10 N -0.394 5.394 11 C 0.402 3.598 12 O -0.468 6.468 13 N -0.370 5.370 14 C 0.059 3.941 15 C 0.028 3.972 16 C -0.539 4.539 17 H 0.077 0.923 18 C -0.130 4.130 19 N -0.509 5.509 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.248 4.248 25 C -0.186 4.186 26 C 0.282 3.718 27 O -0.361 6.361 28 C -0.153 4.153 29 N -0.106 5.106 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.207 0.793 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.232 0.768 39 H 0.228 0.772 40 H 0.088 0.912 41 H 0.053 0.947 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.084 0.916 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 2.923 -22.269 5.395 23.099 hybrid contribution 0.069 0.467 -1.686 1.751 sum 2.992 -21.802 3.709 22.317 Atomic orbital electron populations 1.21871 0.73434 1.04614 1.03571 1.48330 1.06620 1.03208 1.57772 1.22563 0.89659 0.94039 1.04472 1.17544 0.86173 0.90058 1.15451 1.45210 1.04537 1.05782 1.71551 1.22161 0.79348 0.97420 1.02680 1.22974 0.98883 0.92074 1.03563 1.21178 0.91711 0.87106 0.96530 0.85651 1.44836 1.74555 1.05524 1.14524 1.15974 0.78462 0.80147 0.85253 1.90892 1.53355 1.82769 1.19815 1.45091 1.70745 1.07555 1.13577 1.20859 1.00146 0.77720 0.95363 1.19027 0.90989 0.92336 0.94814 1.20283 1.00896 1.30703 1.02048 0.92329 1.24975 0.97643 0.94315 0.96025 1.69960 1.16371 1.35682 1.28883 0.86703 0.79512 0.78195 0.83828 1.20313 1.21273 1.20226 1.23017 0.93723 1.08109 0.99933 1.22491 1.02638 0.94796 0.98676 1.21640 0.92850 0.81116 0.76178 1.90731 1.36887 1.61710 1.46797 1.23583 0.95770 0.92493 1.03424 1.77243 1.00823 1.08942 1.23599 0.90610 0.89227 0.89175 0.79350 0.90039 0.89567 0.88925 0.87818 0.76791 0.77153 0.91166 0.94689 0.92782 0.91638 0.90441 0.89839 0.91635 0.79763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.77 11.48 59.85 0.69 1.45 16 2 N -0.37 -4.27 4.04 -67.82 -0.27 -4.54 16 3 C 0.04 0.52 10.69 -16.68 -0.18 0.34 16 4 C 0.01 0.12 6.80 -83.88 -0.57 -0.45 16 5 N -0.54 -6.10 3.16 -112.38 -0.36 -6.45 16 6 C 0.11 0.66 6.93 -3.03 -0.02 0.64 16 7 C -0.14 -0.83 6.88 -25.01 -0.17 -1.00 16 8 C 0.15 1.74 3.22 -67.94 -0.22 1.52 16 9 H 0.13 1.61 7.66 -51.93 -0.40 1.21 16 10 N -0.74 -10.31 5.16 -58.69 -0.30 -10.61 16 11 C 0.70 13.72 8.52 -86.93 -0.74 12.98 16 12 O -0.59 -14.00 16.05 5.28 0.08 -13.92 16 13 N -0.72 -14.31 5.48 -65.23 -0.36 -14.67 16 14 C 0.18 4.27 5.50 -4.04 -0.02 4.25 16 15 C 0.03 0.69 1.38 -155.66 -0.21 0.48 16 16 C -0.50 -13.08 8.63 -34.45 -0.30 -13.38 16 17 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 18 C 0.07 2.02 5.39 -17.82 -0.10 1.93 16 19 N -0.87 -24.76 12.91 55.43 0.72 -24.05 16 20 Si 0.89 20.99 29.55 -169.99 -5.02 15.97 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 C -0.21 -4.36 9.96 -26.69 -0.27 -4.63 16 25 C -0.15 -3.40 9.42 -26.69 -0.25 -3.65 16 26 C 0.50 7.36 7.61 -10.86 -0.08 7.28 16 27 O -0.49 -9.69 15.60 5.53 0.09 -9.61 16 28 C 0.04 0.36 11.52 -17.22 -0.20 0.16 16 29 N -0.28 -3.37 12.56 30.70 0.39 -2.99 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.19 2.70 6.51 -52.49 -0.34 2.35 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.36 8.13 -51.93 -0.42 -0.06 16 36 H 0.09 0.46 7.80 -51.93 -0.41 0.06 16 37 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.40 4.33 8.40 -40.82 -0.34 3.98 16 39 H 0.40 7.07 8.38 -40.82 -0.34 6.73 16 40 H 0.07 1.93 8.14 -51.93 -0.42 1.50 16 41 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 42 H 0.26 7.19 8.32 -40.82 -0.34 6.85 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 45 H 0.08 2.04 8.14 -51.93 -0.42 1.61 16 46 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 47 H 0.19 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 400.34 15.07 6.03 6.03 Total: -1.00 -37.35 400.34 -8.52 -45.87 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -6.87 Total: 11.05 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -2.64 Total: 7.92 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -0.19 Total: -63.31 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: 0.17 Total: -23.52 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.35 -8.52 -45.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373783492.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.922 kcal (2) G-P(sol) polarization free energy of solvation -37.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds