Wall clock time and date at job start Wed Apr 1 2020 05:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35814 * 126.04849 * 2 1 4 4 C 1.35752 * 107.56020 * 180.02562 * 3 2 1 5 5 N 1.40770 * 126.08191 * 179.73867 * 4 3 2 6 6 C 1.46762 * 124.35113 * 179.72665 * 5 4 3 7 7 C 1.54655 * 105.37958 * 162.85411 * 6 5 4 8 8 C 1.54623 * 101.68814 * 25.76567 * 7 6 5 9 9 H 1.08999 * 110.60146 * 93.71907 * 8 7 6 10 10 N 1.46503 * 110.49053 * 216.30827 * 8 7 6 11 11 C 1.34767 * 120.00288 * 201.22965 * 10 8 7 12 12 O 1.21593 * 120.00309 * 0.02562 * 11 10 8 13 13 N 1.34776 * 120.00217 * 179.97438 * 11 10 8 14 14 C 1.46498 * 120.00313 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47276 * 178.29091 * 14 13 11 16 16 C 1.50693 * 115.55249 * 65.14502 * 15 14 13 17 17 H 1.08007 * 120.00020 * 265.40843 * 16 15 14 18 18 C 1.37873 * 120.00235 * 85.40386 * 16 15 14 19 19 N 1.31519 * 119.99982 * 353.56061 * 18 16 15 20 20 Si 1.86796 * 120.00276 * 173.55829 * 18 16 15 21 21 H 1.48505 * 109.47023 * 60.00259 * 20 18 16 22 22 H 1.48500 * 109.47228 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47348 * 300.00098 * 20 18 16 24 24 C 1.53005 * 117.49816 * 279.47304 * 15 14 13 25 25 C 1.53006 * 117.49828 * 210.82010 * 15 14 13 26 26 C 1.34417 * 124.34725 * 0.02562 * 5 4 3 27 27 O 1.21308 * 124.94376 * 0.38656 * 26 5 4 28 28 C 1.40249 * 107.84206 * 0.02562 * 4 3 2 29 29 N 1.30829 * 108.33694 * 359.97438 * 28 4 3 30 30 H 1.08994 * 109.47211 * 90.00074 * 1 2 3 31 31 H 1.09007 * 109.46835 * 210.00041 * 1 2 3 32 32 H 1.08995 * 109.47440 * 329.99508 * 1 2 3 33 33 H 1.08000 * 126.22132 * 0.06116 * 3 2 1 34 34 H 1.08998 * 110.24514 * 281.98071 * 6 5 4 35 35 H 1.08998 * 110.24657 * 43.98411 * 6 5 4 36 36 H 1.09000 * 111.19183 * 267.59195 * 7 6 5 37 37 H 1.09001 * 110.85496 * 143.79202 * 7 6 5 38 38 H 0.97004 * 119.99633 * 21.22884 * 10 8 7 39 39 H 0.96997 * 119.99947 * 0.02562 * 13 11 10 40 40 H 1.08995 * 109.47358 * 298.29328 * 14 13 11 41 41 H 1.09003 * 109.46722 * 58.29285 * 14 13 11 42 42 H 0.96998 * 120.00586 * 185.06517 * 19 18 16 43 43 H 1.09001 * 117.49757 * 0.02562 * 24 15 14 44 44 H 1.09001 * 117.50133 * 145.01732 * 24 15 14 45 45 H 1.08999 * 117.49537 * 214.97797 * 25 15 14 46 46 H 1.09005 * 117.49882 * 359.96741 * 25 15 14 47 47 H 1.08007 * 125.83762 * 180.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2642 1.0981 0.0000 4 6 3.5517 0.6676 -0.0006 5 7 4.6987 1.4836 -0.0060 6 6 6.0759 0.9765 -0.0006 7 6 6.9537 2.1683 -0.4489 8 6 6.0837 3.3745 -0.0260 9 1 6.3681 3.7233 0.9667 10 7 6.2023 4.4599 -1.0028 11 6 5.8965 5.7233 -0.6469 12 8 5.5227 5.9625 0.4851 13 7 6.0061 6.7218 -1.5455 14 6 5.6733 8.0951 -1.1588 15 6 5.9227 9.0327 -2.3417 16 6 5.0393 8.8132 -3.5427 17 1 5.3784 8.1879 -4.3555 18 6 3.7982 9.4104 -3.6040 19 7 3.3322 10.0668 -2.5639 20 14 2.7785 9.2875 -5.1642 21 1 2.5046 7.8593 -5.4653 22 1 1.4944 10.0090 -4.9745 23 1 3.5259 9.8969 -6.2934 24 6 7.3634 9.4804 -2.5968 25 6 6.3437 10.4698 -2.0276 26 6 4.6733 2.8276 -0.0109 27 8 3.6660 3.5035 -0.0046 28 6 3.5359 -0.7348 -0.0015 29 7 2.2894 -1.1324 -0.0010 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 1.9353 2.1268 0.0009 34 1 6.3555 0.6549 1.0026 35 1 6.1762 0.1500 -0.7042 36 1 7.1097 2.1590 -1.5276 37 1 7.9062 2.1695 0.0810 38 1 6.5009 4.2691 -1.9059 39 1 6.3047 6.5311 -2.4484 40 1 4.6238 8.1468 -0.8692 41 1 6.2976 8.3971 -0.3178 42 1 2.4305 10.4240 -2.5799 43 1 8.1335 9.1065 -1.9221 44 1 7.6722 9.6163 -3.6333 45 1 5.9819 11.2564 -2.6898 46 1 6.4424 10.7474 -0.9781 47 1 4.4043 -1.3770 -0.0018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373783492.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:26 Heat of formation + Delta-G solvation = 30.737370 kcal Electronic energy + Delta-G solvation = -30282.162222 eV Core-core repulsion = 26081.107971 eV Total energy + Delta-G solvation = -4201.054251 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.55659 -41.51353 -40.41429 -38.51194 -37.62577 -35.82142 -34.92949 -34.05517 -33.93660 -32.39155 -29.90036 -28.60539 -27.89779 -27.37053 -26.50068 -23.57512 -23.11569 -22.88835 -21.88102 -21.48856 -21.24274 -20.41354 -19.36301 -18.65263 -18.04776 -17.76042 -17.15242 -17.01403 -16.69212 -16.52487 -16.16221 -15.83593 -15.66265 -15.45370 -15.09071 -14.93736 -14.77509 -14.57231 -14.40142 -13.99647 -13.74970 -13.64762 -13.52553 -13.46478 -13.29348 -12.96196 -12.92931 -12.80926 -12.40206 -12.12814 -12.01447 -12.01075 -11.50576 -11.44364 -11.29360 -11.14804 -10.85102 -10.49067 -10.45061 -10.19556 -10.00649 -9.59493 -8.69599 -8.09577 -6.22551 0.66631 1.12481 1.32487 1.41764 1.42057 1.49041 1.72188 2.03906 2.14476 2.31098 2.41891 3.18516 3.25854 3.30202 3.48902 3.64845 3.67302 3.88308 3.99229 4.10012 4.21562 4.27484 4.35377 4.45448 4.54148 4.58981 4.60629 4.65034 4.68103 4.73317 4.75572 5.00803 5.03082 5.05423 5.10247 5.17241 5.29700 5.44659 5.61155 5.64337 5.72652 5.75873 5.79418 5.93067 6.01774 6.13442 6.37344 6.56619 6.84580 7.08555 7.23813 7.46720 7.70779 8.97774 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011760 B = 0.002684 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.368914 B =10429.884549 C =12053.412705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.378 5.378 3 C 0.014 3.986 4 C -0.004 4.004 5 N -0.532 5.532 6 C 0.098 3.902 7 C -0.115 4.115 8 C 0.138 3.862 9 H 0.114 0.886 10 N -0.716 5.716 11 C 0.698 3.302 12 O -0.637 6.637 13 N -0.713 5.713 14 C 0.201 3.799 15 C 0.005 3.995 16 C -0.505 4.505 17 H 0.065 0.935 18 C 0.023 3.977 19 N -0.908 5.908 20 Si 0.949 3.051 21 H -0.275 1.275 22 H -0.292 1.292 23 H -0.265 1.265 24 C -0.170 4.170 25 C -0.161 4.161 26 C 0.480 3.520 27 O -0.559 6.559 28 C 0.050 3.950 29 N -0.302 5.302 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.166 0.834 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.139 0.861 38 H 0.416 0.584 39 H 0.407 0.593 40 H 0.017 0.983 41 H 0.035 0.965 42 H 0.258 0.742 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.070 0.930 47 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.813 -25.343 2.941 26.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.163 5.163 3 C -0.133 4.133 4 C -0.107 4.107 5 N -0.259 5.259 6 C -0.023 4.023 7 C -0.153 4.153 8 C 0.028 3.972 9 H 0.131 0.869 10 N -0.374 5.374 11 C 0.398 3.602 12 O -0.519 6.519 13 N -0.367 5.367 14 C 0.076 3.924 15 C 0.004 3.996 16 C -0.542 4.542 17 H 0.083 0.917 18 C -0.178 4.178 19 N -0.546 5.546 20 Si 0.775 3.225 21 H -0.201 1.201 22 H -0.218 1.218 23 H -0.190 1.190 24 C -0.207 4.207 25 C -0.199 4.199 26 C 0.267 3.733 27 O -0.435 6.435 28 C -0.137 4.137 29 N -0.124 5.124 30 H 0.104 0.896 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.183 0.817 34 H 0.124 0.876 35 H 0.138 0.862 36 H 0.130 0.870 37 H 0.157 0.843 38 H 0.253 0.747 39 H 0.242 0.758 40 H 0.036 0.964 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.110 0.890 44 H 0.106 0.894 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 5.843 -25.582 3.992 26.543 hybrid contribution -0.829 1.365 -1.218 2.009 sum 5.015 -24.216 2.774 24.885 Atomic orbital electron populations 1.22160 0.71702 1.05815 1.04612 1.48629 1.07718 1.02534 1.57434 1.22472 0.91119 0.93766 1.05972 1.17827 0.86074 0.91168 1.15665 1.45352 1.06405 1.04725 1.69458 1.22679 0.76088 0.98208 1.05293 1.23088 0.98943 0.88025 1.05246 1.21486 0.91551 0.88273 0.95863 0.86862 1.44637 1.72832 1.03994 1.15915 1.16200 0.78000 0.81589 0.84414 1.90858 1.55288 1.83843 1.21883 1.44852 1.70931 1.06629 1.14246 1.20375 0.96925 0.79722 0.95410 1.19019 0.93371 0.92826 0.94384 1.20654 1.01076 1.29808 1.02707 0.91703 1.25726 0.99103 0.94466 0.98511 1.70103 1.16433 1.37269 1.30794 0.85766 0.77900 0.78039 0.80812 1.20074 1.21840 1.18988 1.23003 0.92327 1.04529 1.00882 1.22441 1.04451 0.94203 0.98812 1.22235 0.93149 0.82298 0.75652 1.90697 1.39128 1.63551 1.50126 1.24162 0.96414 0.91717 1.01411 1.77206 1.01686 1.09313 1.24182 0.89629 0.87667 0.88390 0.81724 0.87571 0.86163 0.86987 0.84297 0.74669 0.75789 0.96419 0.94668 0.93345 0.89018 0.89387 0.91808 0.91159 0.75608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.40 11.48 127.77 1.47 2.87 16 2 N -0.38 -8.62 4.04 -368.48 -1.49 -10.11 16 3 C 0.01 0.39 10.69 83.50 0.89 1.28 16 4 C 0.00 -0.10 6.80 37.62 0.26 0.15 16 5 N -0.53 -11.13 3.16 -628.05 -1.99 -13.11 16 6 C 0.10 0.77 6.93 86.89 0.60 1.37 16 7 C -0.12 -0.88 6.88 31.71 0.22 -0.66 16 8 C 0.14 3.12 3.22 44.98 0.14 3.27 16 9 H 0.11 2.87 7.66 -2.39 -0.02 2.85 16 10 N -0.72 -19.34 5.16 -457.86 -2.36 -21.70 16 11 C 0.70 27.73 8.52 179.06 1.53 29.25 16 12 O -0.64 -31.57 16.05 -4.01 -0.06 -31.63 16 13 N -0.71 -28.64 5.48 -478.54 -2.62 -31.27 16 14 C 0.20 9.68 5.50 86.38 0.48 10.15 16 15 C 0.00 0.23 1.38 -52.93 -0.07 0.16 16 16 C -0.50 -26.36 8.63 25.60 0.22 -26.14 16 17 H 0.06 3.23 7.82 -2.91 -0.02 3.20 16 18 C 0.02 1.23 5.39 84.65 0.46 1.69 16 19 N -0.91 -53.41 12.91 21.45 0.28 -53.14 16 20 Si 0.95 43.62 29.55 68.60 2.03 45.64 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 C -0.17 -6.71 9.96 30.62 0.30 -6.40 16 25 C -0.16 -7.42 9.42 30.62 0.29 -7.14 16 26 C 0.48 14.38 7.61 87.90 0.67 15.05 16 27 O -0.56 -23.66 15.60 -3.12 -0.05 -23.71 16 28 C 0.05 0.90 11.52 85.33 0.98 1.88 16 29 N -0.30 -6.70 12.56 -56.77 -0.71 -7.42 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.17 5.29 6.51 -2.91 -0.02 5.27 16 34 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.12 0.24 8.13 -2.39 -0.02 0.22 16 36 H 0.11 0.50 7.80 -2.39 -0.02 0.48 16 37 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.42 8.10 8.40 -92.71 -0.78 7.32 16 39 H 0.41 14.17 8.38 -92.71 -0.78 13.39 16 40 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.04 1.66 8.09 -2.39 -0.02 1.64 16 42 H 0.26 14.72 8.32 -92.71 -0.77 13.95 16 43 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 44 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 45 H 0.06 3.17 8.14 -2.39 -0.02 3.15 16 46 H 0.07 3.12 8.14 -2.38 -0.02 3.10 16 47 H 0.23 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -88.35 400.34 0.91 -87.44 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: -0.54 Total: 32.22 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: 8.43 Total: 26.78 kcal Atomic # 7 Polarization: -127.85 SS G_CDS: -8.89 Total: -136.75 kcal Atomic # 8 Polarization: -55.23 SS G_CDS: -0.11 Total: -55.34 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -88.35 0.91 -87.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373783492.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.181 kcal (2) G-P(sol) polarization free energy of solvation -88.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds