Wall clock time and date at job start Wed Apr 1 2020 05:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35813 * 126.05376 * 2 1 4 4 C 1.35755 * 107.55873 * 180.02562 * 3 2 1 5 5 N 1.40772 * 126.07686 * 179.97438 * 4 3 2 6 6 C 1.45640 * 117.70494 * 353.59256 * 5 4 3 7 7 C 1.52992 * 110.77391 * 158.09740 * 6 5 4 8 8 N 1.47271 * 108.18571 * 46.72415 * 7 6 5 9 9 C 1.34774 * 121.35048 * 118.47833 * 8 7 6 10 10 O 1.21587 * 120.00227 * 5.05415 * 9 8 7 11 11 N 1.34782 * 119.99816 * 185.06072 * 9 8 7 12 12 C 1.46498 * 119.99762 * 185.19558 * 11 9 8 13 13 C 1.52997 * 109.46766 * 175.01202 * 12 11 9 14 14 C 1.50704 * 115.55143 * 306.37174 * 13 12 11 15 15 H 1.07999 * 119.99792 * 144.27005 * 14 13 12 16 16 C 1.37878 * 119.99585 * 324.26493 * 14 13 12 17 17 N 1.31513 * 120.00166 * 3.24814 * 16 14 13 18 18 Si 1.86798 * 119.99499 * 183.24883 * 16 14 13 19 19 H 1.48506 * 109.47179 * 60.00471 * 18 16 14 20 20 H 1.48504 * 109.46797 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.47718 * 299.99920 * 18 16 14 22 22 C 1.53002 * 117.49895 * 160.70166 * 13 12 11 23 23 C 1.53008 * 117.50093 * 92.04141 * 13 12 11 24 24 C 1.47175 * 117.15491 * 298.30736 * 8 7 6 25 25 C 1.33382 * 117.70500 * 173.61181 * 5 4 3 26 26 O 1.21310 * 118.48512 * 4.31867 * 25 5 4 27 27 C 1.40255 * 107.84280 * 0.24710 * 4 3 2 28 28 N 1.30831 * 108.33311 * 359.58623 * 27 4 3 29 29 H 1.08998 * 109.47471 * 89.99113 * 1 2 3 30 30 H 1.08994 * 109.47093 * 209.99746 * 1 2 3 31 31 H 1.09004 * 109.47091 * 329.99589 * 1 2 3 32 32 H 1.07994 * 126.22029 * 0.08205 * 3 2 1 33 33 H 1.09003 * 109.21987 * 278.42859 * 6 5 4 34 34 H 1.09001 * 109.21801 * 37.80605 * 6 5 4 35 35 H 1.08998 * 109.72116 * 166.39932 * 7 6 5 36 36 H 1.09004 * 109.71770 * 287.04862 * 7 6 5 37 37 H 0.96997 * 119.99709 * 5.19339 * 11 9 8 38 38 H 1.08999 * 109.46849 * 295.00503 * 12 11 9 39 39 H 1.08999 * 109.47336 * 55.01046 * 12 11 9 40 40 H 0.96993 * 119.99598 * 185.00534 * 17 16 14 41 41 H 1.09003 * 117.49900 * 359.97438 * 22 13 12 42 42 H 1.09005 * 117.49704 * 145.02265 * 22 13 12 43 43 H 1.09004 * 117.50073 * 214.97799 * 23 13 12 44 44 H 1.09002 * 117.49495 * 359.97438 * 23 13 12 45 45 H 1.08999 * 109.76616 * 283.23338 * 24 8 7 46 46 H 1.09008 * 109.43451 * 162.84499 * 24 8 7 47 47 H 1.07997 * 125.83040 * 179.75675 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2643 1.0980 0.0000 4 6 3.5518 0.6674 -0.0006 5 7 4.6988 1.4834 -0.0013 6 6 4.5077 2.9200 -0.1453 7 6 5.7152 3.6854 0.3995 8 7 6.9363 3.0513 -0.1256 9 6 7.7975 3.7301 -0.9092 10 8 7.6226 4.9145 -1.1211 11 7 8.8526 3.0959 -1.4581 12 6 9.8507 3.8552 -2.2154 13 6 10.9975 2.9272 -2.6207 14 6 11.6393 2.1572 -1.4953 15 1 11.9894 1.1491 -1.6616 16 6 11.7796 2.7398 -0.2536 17 7 11.2963 3.9429 -0.0333 18 14 12.6560 1.8201 1.1158 19 1 14.0502 1.5231 0.6994 20 1 12.6740 2.6577 2.3420 21 1 11.9413 0.5487 1.3948 22 6 11.8988 3.3789 -3.7716 23 6 10.9007 2.2377 -3.9832 24 6 7.1770 1.6475 0.2452 25 6 5.8845 0.8866 0.1296 26 8 5.9217 -0.3255 0.1620 27 6 3.5358 -0.7351 -0.0067 28 7 2.2893 -1.1325 -0.0007 29 1 -0.3634 0.0002 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9355 2.1267 0.0012 33 1 4.3767 3.1606 -1.2004 34 1 3.6156 3.2202 0.4044 35 1 5.6703 4.7242 0.0724 36 1 5.7173 3.6419 1.4886 37 1 8.9510 2.1368 -1.3516 38 1 9.3878 4.2727 -3.1096 39 1 10.2390 4.6636 -1.5959 40 1 11.4577 4.3823 0.8162 41 1 11.6744 4.3371 -4.2403 42 1 12.9559 3.1188 -3.7149 43 1 11.3015 1.2274 -4.0657 44 1 10.0197 2.4451 -4.5906 45 1 7.5415 1.5945 1.2711 46 1 7.9164 1.2158 -0.4294 47 1 4.4041 -1.3772 -0.0123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374019719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:01 Heat of formation + Delta-G solvation = 84.000430 kcal Electronic energy + Delta-G solvation = -31226.456051 eV Core-core repulsion = 27027.711459 eV Total energy + Delta-G solvation = -4198.744591 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.74118 -40.31487 -38.98404 -36.97523 -36.31176 -34.79802 -33.25808 -32.93030 -32.18286 -30.20561 -29.74747 -27.85451 -26.26313 -25.75802 -25.27625 -23.71640 -21.65685 -21.24208 -20.99482 -20.10599 -19.31115 -18.68692 -18.10549 -17.12807 -17.03811 -16.24428 -16.14783 -15.89621 -15.51229 -15.26109 -14.93130 -14.66714 -14.23755 -14.16151 -13.96374 -13.66694 -13.39508 -13.18582 -13.04783 -12.91518 -12.76170 -12.66821 -12.41786 -12.11810 -11.71199 -11.61060 -11.43701 -11.08532 -10.88362 -10.76267 -10.52755 -10.35155 -10.25803 -10.12643 -9.73748 -9.54695 -9.35791 -8.98512 -8.84038 -8.54457 -8.29824 -7.83668 -7.77319 -6.01809 -4.20481 1.54895 2.14627 2.30486 2.75066 2.97291 3.07199 3.22855 3.29937 3.32285 3.88160 4.20483 4.28855 4.39929 4.47939 4.54385 4.69107 4.82475 4.98020 5.00729 5.02005 5.06461 5.11007 5.25468 5.42030 5.46528 5.46717 5.58952 5.69673 5.75351 5.92294 6.02333 6.30031 6.48354 6.52656 6.62303 6.69243 6.71962 6.82292 6.88357 7.01881 7.20522 7.25607 7.36145 7.54117 7.59337 7.67457 7.95866 7.99681 8.30248 8.70175 8.84575 9.33459 9.42900 10.88421 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015328 B = 0.002849 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.250410 B = 9824.675175 C =10188.230493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.379 5.379 3 C 0.017 3.983 4 C -0.002 4.002 5 N -0.516 5.516 6 C 0.097 3.903 7 C 0.119 3.881 8 N -0.643 5.643 9 C 0.713 3.287 10 O -0.598 6.598 11 N -0.696 5.696 12 C 0.183 3.817 13 C 0.035 3.965 14 C -0.497 4.497 15 H 0.060 0.940 16 C 0.076 3.924 17 N -0.866 5.866 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.197 4.197 23 C -0.213 4.213 24 C 0.110 3.890 25 C 0.514 3.486 26 O -0.534 6.534 27 C 0.057 3.943 28 N -0.291 5.291 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.176 0.824 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.074 0.926 37 H 0.393 0.607 38 H 0.017 0.983 39 H 0.114 0.886 40 H 0.262 0.738 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.106 0.894 46 H 0.121 0.879 47 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.498 -2.175 2.319 19.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.164 5.164 3 C -0.130 4.130 4 C -0.106 4.106 5 N -0.241 5.241 6 C -0.027 4.027 7 C -0.005 4.005 8 N -0.384 5.384 9 C 0.415 3.585 10 O -0.478 6.478 11 N -0.347 5.347 12 C 0.060 3.940 13 C 0.035 3.965 14 C -0.534 4.534 15 H 0.078 0.922 16 C -0.129 4.129 17 N -0.502 5.502 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.236 4.236 23 C -0.250 4.250 24 C -0.017 4.017 25 C 0.303 3.697 26 O -0.411 6.411 27 C -0.130 4.130 28 N -0.114 5.114 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.193 0.807 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.135 0.865 36 H 0.093 0.907 37 H 0.228 0.772 38 H 0.035 0.965 39 H 0.131 0.869 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.124 0.876 46 H 0.139 0.861 47 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -20.461 -2.734 2.331 20.775 hybrid contribution 1.136 -0.070 0.754 1.365 sum -19.326 -2.805 3.085 19.770 Atomic orbital electron populations 1.21793 0.73865 1.04351 1.03257 1.48263 1.06382 1.03497 1.58300 1.21897 0.89570 0.93526 1.08025 1.17950 0.86396 0.91331 1.14875 1.44359 1.03843 1.06784 1.69160 1.22033 0.99843 0.78148 1.02674 1.21689 0.81438 0.98941 0.98469 1.47344 1.25073 1.11678 1.54343 1.15709 0.79856 0.84569 0.78405 1.90833 1.76445 1.13781 1.66732 1.44953 1.23396 1.11149 1.55242 1.20969 0.85218 0.95312 0.92528 1.19246 0.94444 0.96052 0.86798 1.20474 1.39662 1.00091 0.93193 0.92153 1.24979 0.94590 0.95206 0.98103 1.69879 1.42373 1.13328 1.24605 0.86681 0.80484 0.79775 0.81261 1.20255 1.21266 1.19989 1.22940 0.96430 0.96522 1.07706 1.22967 1.00858 0.96569 1.04596 1.21719 0.94066 0.81401 1.04476 1.20563 0.85047 0.88294 0.75836 1.90558 1.86271 1.14000 1.50228 1.24879 0.95346 0.93656 0.99135 1.77422 1.01477 1.08359 1.24097 0.90868 0.89328 0.89620 0.80697 0.90540 0.89471 0.86537 0.90745 0.77173 0.96488 0.86854 0.92695 0.91446 0.90203 0.90624 0.91355 0.87647 0.86128 0.77081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.58 11.48 59.85 0.69 1.27 16 2 N -0.38 -3.90 4.04 -67.82 -0.27 -4.17 16 3 C 0.02 0.16 10.59 -16.68 -0.18 -0.01 16 4 C 0.00 -0.03 6.53 -83.88 -0.55 -0.58 16 5 N -0.52 -6.38 3.06 -114.79 -0.35 -6.73 16 6 C 0.10 0.93 6.19 -4.51 -0.03 0.90 16 7 C 0.12 1.38 6.52 -3.62 -0.02 1.36 16 8 N -0.64 -9.92 2.98 -179.78 -0.54 -10.45 16 9 C 0.71 14.22 8.33 -86.92 -0.72 13.50 16 10 O -0.60 -13.72 15.84 5.29 0.08 -13.63 16 11 N -0.70 -14.49 4.95 -65.23 -0.32 -14.81 16 12 C 0.18 4.22 4.61 -4.04 -0.02 4.20 16 13 C 0.04 0.81 2.04 -155.65 -0.32 0.50 16 14 C -0.50 -12.31 8.41 -34.44 -0.29 -12.60 16 15 H 0.06 1.51 7.82 -52.49 -0.41 1.09 16 16 C 0.08 1.88 5.29 -17.82 -0.09 1.79 16 17 N -0.87 -22.32 10.18 55.43 0.56 -21.76 16 18 Si 0.89 19.72 29.54 -169.99 -5.02 14.69 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 C -0.20 -4.23 9.96 -26.69 -0.27 -4.50 16 23 C -0.21 -4.36 9.92 -26.69 -0.26 -4.63 16 24 C 0.11 1.58 6.54 -4.96 -0.03 1.54 16 25 C 0.51 7.40 7.56 -11.74 -0.09 7.31 16 26 O -0.53 -8.82 13.60 5.53 0.08 -8.74 16 27 C 0.06 0.81 10.67 -17.22 -0.18 0.62 16 28 N -0.29 -3.97 12.56 30.70 0.39 -3.59 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.18 1.02 7.14 -52.49 -0.37 0.64 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.55 6.80 -51.93 -0.35 0.20 16 35 H 0.12 1.43 7.07 -51.93 -0.37 1.06 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.39 7.85 5.71 -40.82 -0.23 7.62 16 38 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 39 H 0.11 2.98 5.97 -51.93 -0.31 2.67 16 40 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 43 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 45 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.12 1.82 5.82 -51.92 -0.30 1.52 16 47 H 0.21 3.22 5.68 -52.49 -0.30 2.92 16 LS Contribution 382.53 15.07 5.76 5.76 Total: -1.00 -32.13 382.53 -8.43 -40.56 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -6.43 Total: 12.20 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: -2.37 Total: 10.68 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: -0.53 Total: -61.52 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: 0.16 Total: -22.37 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.13 -8.43 -40.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374019719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.558 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds