Wall clock time and date at job start Wed Apr 1 2020 05:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35813 * 126.05376 * 2 1 4 4 C 1.35755 * 107.55873 * 180.02562 * 3 2 1 5 5 N 1.40772 * 126.07686 * 179.97438 * 4 3 2 6 6 C 1.45640 * 117.70494 * 353.59256 * 5 4 3 7 7 C 1.52992 * 110.77391 * 158.09740 * 6 5 4 8 8 N 1.47271 * 108.18571 * 46.72415 * 7 6 5 9 9 C 1.34774 * 121.35048 * 118.47833 * 8 7 6 10 10 O 1.21587 * 120.00227 * 5.05415 * 9 8 7 11 11 N 1.34782 * 119.99816 * 185.06072 * 9 8 7 12 12 C 1.46498 * 119.99762 * 185.19558 * 11 9 8 13 13 C 1.52997 * 109.46766 * 175.01202 * 12 11 9 14 14 C 1.50704 * 115.55143 * 306.37174 * 13 12 11 15 15 H 1.07999 * 119.99792 * 144.27005 * 14 13 12 16 16 C 1.37878 * 119.99585 * 324.26493 * 14 13 12 17 17 N 1.31513 * 120.00166 * 3.24814 * 16 14 13 18 18 Si 1.86798 * 119.99499 * 183.24883 * 16 14 13 19 19 H 1.48506 * 109.47179 * 60.00471 * 18 16 14 20 20 H 1.48504 * 109.46797 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.47718 * 299.99920 * 18 16 14 22 22 C 1.53002 * 117.49895 * 160.70166 * 13 12 11 23 23 C 1.53008 * 117.50093 * 92.04141 * 13 12 11 24 24 C 1.47175 * 117.15491 * 298.30736 * 8 7 6 25 25 C 1.33382 * 117.70500 * 173.61181 * 5 4 3 26 26 O 1.21310 * 118.48512 * 4.31867 * 25 5 4 27 27 C 1.40255 * 107.84280 * 0.24710 * 4 3 2 28 28 N 1.30831 * 108.33311 * 359.58623 * 27 4 3 29 29 H 1.08998 * 109.47471 * 89.99113 * 1 2 3 30 30 H 1.08994 * 109.47093 * 209.99746 * 1 2 3 31 31 H 1.09004 * 109.47091 * 329.99589 * 1 2 3 32 32 H 1.07994 * 126.22029 * 0.08205 * 3 2 1 33 33 H 1.09003 * 109.21987 * 278.42859 * 6 5 4 34 34 H 1.09001 * 109.21801 * 37.80605 * 6 5 4 35 35 H 1.08998 * 109.72116 * 166.39932 * 7 6 5 36 36 H 1.09004 * 109.71770 * 287.04862 * 7 6 5 37 37 H 0.96997 * 119.99709 * 5.19339 * 11 9 8 38 38 H 1.08999 * 109.46849 * 295.00503 * 12 11 9 39 39 H 1.08999 * 109.47336 * 55.01046 * 12 11 9 40 40 H 0.96993 * 119.99598 * 185.00534 * 17 16 14 41 41 H 1.09003 * 117.49900 * 359.97438 * 22 13 12 42 42 H 1.09005 * 117.49704 * 145.02265 * 22 13 12 43 43 H 1.09004 * 117.50073 * 214.97799 * 23 13 12 44 44 H 1.09002 * 117.49495 * 359.97438 * 23 13 12 45 45 H 1.08999 * 109.76616 * 283.23338 * 24 8 7 46 46 H 1.09008 * 109.43451 * 162.84499 * 24 8 7 47 47 H 1.07997 * 125.83040 * 179.75675 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2643 1.0980 0.0000 4 6 3.5518 0.6674 -0.0006 5 7 4.6988 1.4834 -0.0013 6 6 4.5077 2.9200 -0.1453 7 6 5.7152 3.6854 0.3995 8 7 6.9363 3.0513 -0.1256 9 6 7.7975 3.7301 -0.9092 10 8 7.6226 4.9145 -1.1211 11 7 8.8526 3.0959 -1.4581 12 6 9.8507 3.8552 -2.2154 13 6 10.9975 2.9272 -2.6207 14 6 11.6393 2.1572 -1.4953 15 1 11.9894 1.1491 -1.6616 16 6 11.7796 2.7398 -0.2536 17 7 11.2963 3.9429 -0.0333 18 14 12.6560 1.8201 1.1158 19 1 14.0502 1.5231 0.6994 20 1 12.6740 2.6577 2.3420 21 1 11.9413 0.5487 1.3948 22 6 11.8988 3.3789 -3.7716 23 6 10.9007 2.2377 -3.9832 24 6 7.1770 1.6475 0.2452 25 6 5.8845 0.8866 0.1296 26 8 5.9217 -0.3255 0.1620 27 6 3.5358 -0.7351 -0.0067 28 7 2.2893 -1.1325 -0.0007 29 1 -0.3634 0.0002 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9355 2.1267 0.0012 33 1 4.3767 3.1606 -1.2004 34 1 3.6156 3.2202 0.4044 35 1 5.6703 4.7242 0.0724 36 1 5.7173 3.6419 1.4886 37 1 8.9510 2.1368 -1.3516 38 1 9.3878 4.2727 -3.1096 39 1 10.2390 4.6636 -1.5959 40 1 11.4577 4.3823 0.8162 41 1 11.6744 4.3371 -4.2403 42 1 12.9559 3.1188 -3.7149 43 1 11.3015 1.2274 -4.0657 44 1 10.0197 2.4451 -4.5906 45 1 7.5415 1.5945 1.2711 46 1 7.9164 1.2158 -0.4294 47 1 4.4041 -1.3772 -0.0123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374019719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:00 Heat of formation + Delta-G solvation = 63.143330 kcal Electronic energy + Delta-G solvation = -31227.360483 eV Core-core repulsion = 27027.711459 eV Total energy + Delta-G solvation = -4199.649023 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.67097 -41.44177 -40.35161 -38.59256 -37.53873 -36.00677 -34.75441 -34.08773 -33.79727 -31.23496 -30.67478 -28.89904 -27.76285 -27.17158 -26.57384 -24.85194 -22.96233 -22.60613 -21.86224 -21.35656 -21.09540 -19.85910 -19.38779 -18.30787 -18.17788 -17.67462 -17.25821 -16.90793 -16.76007 -16.54885 -16.27259 -15.96911 -15.63507 -15.44802 -15.12015 -14.95215 -14.81802 -14.36072 -14.17373 -13.90382 -13.64339 -13.53791 -13.49327 -13.33816 -13.30721 -13.08695 -12.88450 -12.59677 -12.56265 -12.28510 -12.01310 -11.75920 -11.57301 -11.36913 -11.22685 -10.91792 -10.79997 -10.62974 -10.37464 -10.13505 -9.92221 -9.36129 -8.71752 -7.91324 -6.15423 0.72097 1.24335 1.35332 1.45445 1.49261 1.54283 1.70046 1.99021 2.00862 2.34981 2.44786 2.96156 3.21766 3.27145 3.67107 3.72588 3.75478 3.90944 4.02821 4.19049 4.28444 4.30741 4.34800 4.42347 4.49447 4.56975 4.64564 4.69060 4.72884 4.76059 4.79129 4.86242 4.89159 4.98925 4.99684 5.13999 5.27870 5.43004 5.55936 5.64004 5.77480 5.88910 5.98875 6.05481 6.07975 6.24487 6.41888 6.64210 6.84505 6.95178 7.20570 7.49278 7.76344 8.95589 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015328 B = 0.002849 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.250410 B = 9824.675175 C =10188.230493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.373 5.373 3 C 0.047 3.953 4 C -0.036 4.036 5 N -0.508 5.508 6 C 0.100 3.900 7 C 0.113 3.887 8 N -0.637 5.637 9 C 0.711 3.289 10 O -0.632 6.632 11 N -0.699 5.699 12 C 0.196 3.804 13 C 0.009 3.991 14 C -0.506 4.506 15 H 0.055 0.945 16 C 0.042 3.958 17 N -0.884 5.884 18 Si 0.942 3.058 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.269 1.269 22 C -0.197 4.197 23 C -0.190 4.190 24 C 0.114 3.886 25 C 0.510 3.490 26 O -0.564 6.564 27 C 0.033 3.967 28 N -0.324 5.324 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.122 0.878 32 H 0.224 0.776 33 H 0.077 0.923 34 H 0.134 0.866 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.395 0.605 38 H 0.015 0.985 39 H 0.080 0.920 40 H 0.257 0.743 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.116 0.884 46 H 0.108 0.892 47 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.102 -1.673 2.674 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.158 5.158 3 C -0.102 4.102 4 C -0.139 4.139 5 N -0.233 5.233 6 C -0.022 4.022 7 C -0.009 4.009 8 N -0.377 5.377 9 C 0.412 3.588 10 O -0.514 6.514 11 N -0.350 5.350 12 C 0.072 3.928 13 C 0.008 3.992 14 C -0.543 4.543 15 H 0.073 0.927 16 C -0.160 4.160 17 N -0.521 5.521 18 Si 0.769 3.231 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.194 1.194 22 C -0.236 4.236 23 C -0.228 4.228 24 C -0.012 4.012 25 C 0.299 3.701 26 O -0.443 6.443 27 C -0.152 4.152 28 N -0.148 5.148 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.140 0.860 32 H 0.241 0.759 33 H 0.096 0.904 34 H 0.152 0.848 35 H 0.130 0.870 36 H 0.113 0.887 37 H 0.231 0.769 38 H 0.033 0.967 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.134 0.866 46 H 0.126 0.874 47 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -23.129 -2.262 2.696 23.396 hybrid contribution 1.798 -0.220 0.620 1.914 sum -21.332 -2.482 3.316 21.730 Atomic orbital electron populations 1.22248 0.70996 1.06264 1.04786 1.48766 1.07964 1.02846 1.56212 1.22585 0.88135 0.95158 1.04282 1.18120 0.87477 0.90701 1.17560 1.44323 1.03211 1.07762 1.67997 1.22190 1.00400 0.76184 1.03433 1.21998 0.80446 0.98787 0.99695 1.47323 1.25382 1.11941 1.53058 1.15830 0.80037 0.84297 0.78615 1.90800 1.77368 1.15237 1.68022 1.44846 1.23477 1.11116 1.55575 1.20602 0.85646 0.94662 0.91885 1.19295 0.95174 0.97246 0.87490 1.20635 1.39686 0.99967 0.94014 0.92727 1.25485 0.95159 0.95708 0.99656 1.70049 1.43234 1.14291 1.24514 0.85874 0.79358 0.78905 0.79010 1.20534 1.21621 1.19362 1.22959 0.96329 0.97529 1.06733 1.22950 1.00855 0.96483 1.02475 1.21696 0.94276 0.80624 1.04651 1.20436 0.85619 0.87863 0.76193 1.90569 1.86695 1.15096 1.51897 1.24641 0.95227 0.94784 1.00567 1.77354 1.01686 1.10258 1.25473 0.89474 0.89257 0.85972 0.75918 0.90439 0.84825 0.86976 0.88653 0.76858 0.96711 0.90217 0.93342 0.90410 0.90497 0.90068 0.89860 0.86646 0.87378 0.79346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.67 11.48 127.77 1.47 2.13 16 2 N -0.37 -6.56 4.04 -368.49 -1.49 -8.05 16 3 C 0.05 0.72 10.59 83.50 0.88 1.61 16 4 C -0.04 -0.84 6.53 37.62 0.25 -0.59 16 5 N -0.51 -11.68 3.06 -636.24 -1.95 -13.63 16 6 C 0.10 1.60 6.19 86.54 0.54 2.13 16 7 C 0.11 2.40 6.52 86.23 0.56 2.96 16 8 N -0.64 -19.30 2.98 -840.96 -2.51 -21.81 16 9 C 0.71 28.57 8.33 179.05 1.49 30.06 16 10 O -0.63 -29.29 15.84 -3.99 -0.06 -29.35 16 11 N -0.70 -29.57 4.95 -478.54 -2.37 -31.94 16 12 C 0.20 9.22 4.61 86.38 0.40 9.62 16 13 C 0.01 0.40 2.04 -52.92 -0.11 0.29 16 14 C -0.51 -25.18 8.41 25.60 0.22 -24.96 16 15 H 0.05 2.73 7.82 -2.91 -0.02 2.70 16 16 C 0.04 2.11 5.29 84.66 0.45 2.55 16 17 N -0.88 -46.41 10.18 21.45 0.22 -46.19 16 18 Si 0.94 40.70 29.54 68.60 2.03 42.73 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 22 C -0.20 -8.33 9.96 30.62 0.30 -8.03 16 23 C -0.19 -7.61 9.92 30.62 0.30 -7.31 16 24 C 0.11 3.27 6.54 85.42 0.56 3.82 16 25 C 0.51 14.63 7.56 87.79 0.66 15.29 16 26 O -0.56 -19.28 13.60 -3.12 -0.04 -19.32 16 27 C 0.03 0.96 10.67 85.33 0.91 1.87 16 28 N -0.32 -8.65 12.56 -56.77 -0.71 -9.36 16 29 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.63 16 31 H 0.12 0.00 8.14 -2.38 -0.02 -0.02 16 32 H 0.22 1.07 7.14 -2.91 -0.02 1.05 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.13 0.94 6.80 -2.39 -0.02 0.92 16 35 H 0.11 2.55 7.07 -2.39 -0.02 2.53 16 36 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.40 16.13 5.71 -92.71 -0.53 15.60 16 38 H 0.01 0.68 8.08 -2.39 -0.02 0.66 16 39 H 0.08 4.33 5.97 -2.39 -0.01 4.31 16 40 H 0.26 13.34 8.32 -92.71 -0.77 12.57 16 41 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 42 H 0.08 3.26 8.14 -2.38 -0.02 3.25 16 43 H 0.08 3.15 8.14 -2.38 -0.02 3.13 16 44 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 45 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 46 H 0.11 3.37 5.82 -2.38 -0.01 3.35 16 47 H 0.19 6.18 5.68 -2.91 -0.02 6.16 16 Total: -1.00 -72.53 382.53 2.48 -70.05 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: 0.49 Total: 35.42 kcal Atomic # 6 Polarization: 22.58 SS G_CDS: 8.88 Total: 31.46 kcal Atomic # 7 Polarization: -122.18 SS G_CDS: -8.80 Total: -130.98 kcal Atomic # 8 Polarization: -48.57 SS G_CDS: -0.11 Total: -48.67 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -72.53 2.48 -70.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374019719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.191 kcal (2) G-P(sol) polarization free energy of solvation -72.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds