Wall clock time and date at job start Wed Apr 1 2020 05:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34486 * 125.78201 * 2 1 4 4 C 1.37904 * 107.41098 * 179.72810 * 3 2 1 5 5 C 1.47618 * 126.38567 * 180.24194 * 4 3 2 6 6 N 1.32243 * 126.68304 * 179.71448 * 5 4 3 7 7 C 1.34217 * 105.52382 * 179.89378 * 6 5 4 8 8 C 1.50699 * 126.17931 * 180.13537 * 7 6 5 9 9 H 1.08994 * 109.50665 * 345.30307 * 8 7 6 10 10 C 1.53092 * 109.50479 * 105.39631 * 8 7 6 11 11 O 1.43020 * 109.25584 * 176.73535 * 10 8 7 12 12 C 1.43020 * 113.77680 * 301.39927 * 11 10 8 13 13 C 1.53091 * 109.25714 * 58.64260 * 12 11 10 14 14 N 1.47013 * 109.26088 * 303.15115 * 13 12 11 15 15 C 1.46905 * 111.00288 * 182.39215 * 14 13 12 16 16 C 1.53000 * 109.46816 * 46.36944 * 15 14 13 17 17 C 1.52998 * 109.46984 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.46974 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00199 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00065 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99607 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00063 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47153 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46787 * 120.00325 * 22 20 18 25 25 H 1.48498 * 109.47380 * 240.00151 * 22 20 18 26 26 N 1.30035 * 107.63447 * 0.37604 * 7 6 5 27 27 O 1.21279 * 110.51497 * 359.75683 * 26 7 6 28 28 C 1.41199 * 107.22490 * 0.24543 * 4 3 2 29 29 N 1.30508 * 108.06871 * 359.97438 * 28 4 3 30 30 H 1.08992 * 109.47275 * 89.99634 * 1 2 3 31 31 H 1.09003 * 109.46735 * 209.99879 * 1 2 3 32 32 H 1.09002 * 109.46968 * 329.99192 * 1 2 3 33 33 H 1.08002 * 126.29927 * 0.02562 * 3 2 1 34 34 H 1.09003 * 109.50796 * 296.71680 * 10 8 7 35 35 H 1.08997 * 109.51264 * 56.84863 * 10 8 7 36 36 H 1.09005 * 109.50128 * 298.70851 * 12 11 10 37 37 H 1.08997 * 109.50814 * 178.57939 * 12 11 10 38 38 H 1.09004 * 109.50877 * 183.21923 * 13 12 11 39 39 H 1.08998 * 109.54660 * 63.11009 * 13 12 11 40 40 H 1.08993 * 109.47051 * 166.36507 * 15 14 13 41 41 H 1.08998 * 109.46710 * 286.37016 * 15 14 13 42 42 H 1.09001 * 109.47126 * 299.99799 * 16 15 14 43 43 H 1.09001 * 109.47321 * 59.99749 * 16 15 14 44 44 H 1.09001 * 109.46859 * 299.99759 * 17 16 15 45 45 H 1.08992 * 109.47589 * 59.99619 * 17 16 15 46 46 H 0.97005 * 120.00276 * 179.97438 * 21 20 18 47 47 H 1.08004 * 125.96533 * 179.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2514 1.0910 0.0000 4 6 3.5601 0.6564 0.0062 5 6 4.7657 1.5082 0.0135 6 7 6.0228 1.0980 0.0248 7 6 6.7656 2.2159 0.0252 8 6 8.2710 2.2838 0.0333 9 1 8.6779 1.3083 0.2994 10 6 8.7720 2.6850 -1.3565 11 8 10.1953 2.8220 -1.3234 12 6 10.6596 3.7888 -0.3774 13 6 10.1777 3.3978 1.0221 14 7 8.7120 3.2843 1.0161 15 6 8.2031 2.9652 2.3568 16 6 8.8774 3.8729 3.3875 17 6 8.3479 3.5401 4.7839 18 6 9.0125 4.4337 5.7992 19 1 9.7401 5.1655 5.4805 20 6 8.6917 4.3171 7.1351 21 7 7.8061 3.4257 7.5232 22 14 9.5160 5.4242 8.3937 23 1 10.4668 6.3339 7.7054 24 1 8.4841 6.2277 9.0973 25 1 10.2518 4.5917 9.3789 26 7 5.9513 3.2298 0.0226 27 8 4.7996 2.8499 0.0159 28 6 3.5319 -0.7553 0.0043 29 7 2.2834 -1.1352 -0.0022 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5140 33 1 1.9191 2.1186 0.0004 34 1 8.4964 1.9164 -2.0787 35 1 8.3223 3.6349 -1.6455 36 1 10.2647 4.7710 -0.6371 37 1 11.7491 3.8184 -0.3921 38 1 10.4807 4.1618 1.7381 39 1 10.6157 2.4404 1.3043 40 1 7.1251 3.1235 2.3834 41 1 8.4234 1.9236 2.5905 42 1 9.9555 3.7146 3.3610 43 1 8.6572 4.9145 3.1537 44 1 7.2697 3.6980 4.8108 45 1 8.5684 2.4986 5.0175 46 1 7.5806 3.3433 8.4631 47 1 4.3932 -1.4070 0.0075 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374843182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:03 Heat of formation + Delta-G solvation = 112.984115 kcal Electronic energy + Delta-G solvation = -30179.075323 eV Core-core repulsion = 25981.587558 eV Total energy + Delta-G solvation = -4197.487765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.44348 -41.63125 -39.79527 -36.50460 -35.73906 -34.28219 -33.54471 -32.86735 -31.50512 -31.03071 -30.00894 -28.06746 -27.47797 -25.49753 -25.19385 -24.14753 -22.86285 -22.52488 -21.42423 -21.27810 -20.05560 -19.64269 -18.18186 -18.03710 -17.06086 -16.63685 -16.20203 -16.02307 -15.96887 -15.49391 -15.14397 -15.03148 -14.89088 -14.52951 -14.38771 -13.80802 -13.64264 -13.56035 -13.33283 -13.07889 -12.68949 -12.49463 -12.39222 -12.12645 -11.84936 -11.58898 -11.47733 -11.36471 -11.32281 -10.95415 -10.91523 -10.81613 -10.55366 -10.44520 -10.43202 -10.01892 -9.71964 -9.67198 -9.36875 -9.04323 -8.69145 -8.34917 -8.25262 -5.99529 -4.01924 0.71528 1.50059 1.86506 2.03768 2.71965 2.79981 3.31129 3.31789 3.38377 3.42696 3.65434 3.90800 4.01308 4.25822 4.37057 4.46615 4.62873 4.65876 4.74803 4.89529 4.91687 5.01007 5.05680 5.09429 5.18567 5.28689 5.32058 5.36337 5.55215 5.67438 5.69454 5.71088 5.82083 5.90434 5.96502 5.99150 6.02844 6.22292 6.31154 6.60618 6.68515 6.94616 7.00831 7.11205 7.14476 7.22392 7.67218 7.81066 8.00016 8.25207 8.42559 9.05085 9.62048 11.11973 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007728 B = 0.002904 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3622.392704 B = 9640.986859 C =12714.368736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.361 5.361 3 C 0.115 3.885 4 C -0.186 4.186 5 C 0.263 3.737 6 N -0.477 5.477 7 C 0.185 3.815 8 C 0.140 3.860 9 H 0.080 0.920 10 C 0.079 3.921 11 O -0.380 6.380 12 C 0.060 3.940 13 C 0.015 3.985 14 N -0.526 5.526 15 C 0.058 3.942 16 C -0.109 4.109 17 C 0.023 3.977 18 C -0.518 4.518 19 H 0.056 0.944 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.284 1.284 26 N -0.355 5.355 27 O 0.078 5.922 28 C 0.111 3.889 29 N -0.294 5.294 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.193 0.807 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.032 0.968 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.014 0.986 45 H 0.014 0.986 46 H 0.260 0.740 47 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.564 -5.843 -21.231 24.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.139 5.139 3 C -0.039 4.039 4 C -0.201 4.201 5 C 0.046 3.954 6 N -0.212 5.212 7 C -0.088 4.088 8 C 0.029 3.971 9 H 0.097 0.903 10 C 0.000 4.000 11 O -0.298 6.298 12 C -0.017 4.017 13 C -0.112 4.112 14 N -0.253 5.253 15 C -0.069 4.069 16 C -0.147 4.147 17 C -0.014 4.014 18 C -0.556 4.556 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.535 5.535 22 Si 0.720 3.280 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 N -0.061 5.061 27 O 0.017 5.983 28 C -0.077 4.077 29 N -0.114 5.114 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.210 0.790 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.033 0.967 45 H 0.032 0.968 46 H 0.069 0.931 47 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -12.049 -6.035 -21.327 25.228 hybrid contribution 0.766 0.579 1.446 1.736 sum -11.283 -5.457 -19.882 23.502 Atomic orbital electron populations 1.22055 0.72902 1.05381 1.04090 1.48402 1.07453 1.03695 1.54349 1.23023 0.89796 0.94241 0.96820 1.17317 0.87296 0.91775 1.23663 1.25156 0.92632 0.81933 0.95709 1.72097 0.99682 1.27718 1.21662 1.25126 0.98917 0.83431 1.01359 1.20484 0.83944 0.96776 0.95878 0.90274 1.22575 0.81674 1.01944 0.93786 1.87989 1.20504 1.61237 1.60108 1.22804 0.99571 0.92014 0.87285 1.22934 0.87275 1.02485 0.98551 1.62335 1.10374 1.45282 1.07284 1.22331 0.99971 0.98408 0.86173 1.21779 0.98827 0.98300 0.95792 1.19053 0.96394 0.96833 0.89145 1.21257 1.23540 1.19027 0.91773 0.92598 1.25035 0.95238 0.95591 0.98668 1.69982 1.32876 1.34634 1.16000 0.86536 0.79379 0.80633 0.81463 1.19709 1.21011 1.21019 1.74683 0.88827 1.22653 1.19919 1.85431 1.23959 1.22726 1.66134 1.24056 0.95273 0.92776 0.95633 1.77345 1.01436 1.07553 1.25077 0.89982 0.88598 0.88704 0.78985 0.88249 0.91768 0.92002 0.88113 0.87704 0.93564 0.91519 0.94951 0.92948 0.92379 0.96714 0.96793 0.93082 0.78441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.28 11.45 59.85 0.69 0.97 16 2 N -0.36 -2.68 3.99 -67.58 -0.27 -2.95 16 3 C 0.11 0.85 11.50 -16.51 -0.19 0.66 16 4 C -0.19 -1.93 6.12 -105.07 -0.64 -2.57 16 5 C 0.26 3.43 8.28 -13.88 -0.11 3.31 16 6 N -0.48 -7.07 11.59 -10.17 -0.12 -7.19 16 7 C 0.19 2.88 5.66 -156.55 -0.89 2.00 16 8 C 0.14 2.08 2.49 -68.75 -0.17 1.91 16 9 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 10 C 0.08 1.01 6.28 37.21 0.23 1.24 16 11 O -0.38 -5.07 10.82 -35.23 -0.38 -5.45 16 12 C 0.06 0.72 7.01 37.20 0.26 0.99 16 13 C 0.02 0.22 4.94 -3.72 -0.02 0.20 16 14 N -0.53 -8.61 4.67 -227.73 -1.06 -9.67 16 15 C 0.06 1.11 4.73 -3.82 -0.02 1.09 16 16 C -0.11 -2.34 4.42 -26.73 -0.12 -2.46 16 17 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 18 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 22 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 N -0.35 -5.69 11.92 31.21 0.37 -5.31 16 27 O 0.08 1.09 11.34 16.62 0.19 1.28 16 28 C 0.11 1.12 12.01 -16.99 -0.20 0.91 16 29 N -0.29 -2.97 12.51 30.85 0.39 -2.58 16 30 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 33 H 0.19 0.75 8.06 -52.49 -0.42 0.32 16 34 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.10 1.53 6.05 -51.93 -0.31 1.21 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 1.39 7.25 -51.93 -0.38 1.01 16 41 H 0.03 0.64 8.08 -51.93 -0.42 0.22 16 42 H 0.05 1.07 6.28 -51.93 -0.33 0.74 16 43 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.20 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 392.93 15.07 5.92 5.92 Total: -1.00 -35.94 392.93 -7.88 -43.82 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -6.90 Total: -3.11 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -1.73 Total: -5.00 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.04 Total: -54.42 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.19 Total: -4.17 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.94 -7.88 -43.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374843182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.808 kcal (2) G-P(sol) polarization free energy of solvation -35.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds