Wall clock time and date at job start Wed Apr 1 2020 05:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34486 * 125.78201 * 2 1 4 4 C 1.37904 * 107.41098 * 179.72810 * 3 2 1 5 5 C 1.47618 * 126.38567 * 180.24194 * 4 3 2 6 6 N 1.32243 * 126.68304 * 179.71448 * 5 4 3 7 7 C 1.34217 * 105.52382 * 179.89378 * 6 5 4 8 8 C 1.50699 * 126.17931 * 180.13537 * 7 6 5 9 9 H 1.08994 * 109.50665 * 345.30307 * 8 7 6 10 10 C 1.53092 * 109.50479 * 105.39631 * 8 7 6 11 11 O 1.43020 * 109.25584 * 176.73535 * 10 8 7 12 12 C 1.43020 * 113.77680 * 301.39927 * 11 10 8 13 13 C 1.53091 * 109.25714 * 58.64260 * 12 11 10 14 14 N 1.47013 * 109.26088 * 303.15115 * 13 12 11 15 15 C 1.46905 * 111.00288 * 182.39215 * 14 13 12 16 16 C 1.53000 * 109.46816 * 46.36944 * 15 14 13 17 17 C 1.52998 * 109.46984 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.46974 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00199 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00065 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99607 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00063 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47153 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46787 * 120.00325 * 22 20 18 25 25 H 1.48498 * 109.47380 * 240.00151 * 22 20 18 26 26 N 1.30035 * 107.63447 * 0.37604 * 7 6 5 27 27 O 1.21279 * 110.51497 * 359.75683 * 26 7 6 28 28 C 1.41199 * 107.22490 * 0.24543 * 4 3 2 29 29 N 1.30508 * 108.06871 * 359.97438 * 28 4 3 30 30 H 1.08992 * 109.47275 * 89.99634 * 1 2 3 31 31 H 1.09003 * 109.46735 * 209.99879 * 1 2 3 32 32 H 1.09002 * 109.46968 * 329.99192 * 1 2 3 33 33 H 1.08002 * 126.29927 * 0.02562 * 3 2 1 34 34 H 1.09003 * 109.50796 * 296.71680 * 10 8 7 35 35 H 1.08997 * 109.51264 * 56.84863 * 10 8 7 36 36 H 1.09005 * 109.50128 * 298.70851 * 12 11 10 37 37 H 1.08997 * 109.50814 * 178.57939 * 12 11 10 38 38 H 1.09004 * 109.50877 * 183.21923 * 13 12 11 39 39 H 1.08998 * 109.54660 * 63.11009 * 13 12 11 40 40 H 1.08993 * 109.47051 * 166.36507 * 15 14 13 41 41 H 1.08998 * 109.46710 * 286.37016 * 15 14 13 42 42 H 1.09001 * 109.47126 * 299.99799 * 16 15 14 43 43 H 1.09001 * 109.47321 * 59.99749 * 16 15 14 44 44 H 1.09001 * 109.46859 * 299.99759 * 17 16 15 45 45 H 1.08992 * 109.47589 * 59.99619 * 17 16 15 46 46 H 0.97005 * 120.00276 * 179.97438 * 21 20 18 47 47 H 1.08004 * 125.96533 * 179.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2514 1.0910 0.0000 4 6 3.5601 0.6564 0.0062 5 6 4.7657 1.5082 0.0135 6 7 6.0228 1.0980 0.0248 7 6 6.7656 2.2159 0.0252 8 6 8.2710 2.2838 0.0333 9 1 8.6779 1.3083 0.2994 10 6 8.7720 2.6850 -1.3565 11 8 10.1953 2.8220 -1.3234 12 6 10.6596 3.7888 -0.3774 13 6 10.1777 3.3978 1.0221 14 7 8.7120 3.2843 1.0161 15 6 8.2031 2.9652 2.3568 16 6 8.8774 3.8729 3.3875 17 6 8.3479 3.5401 4.7839 18 6 9.0125 4.4337 5.7992 19 1 9.7401 5.1655 5.4805 20 6 8.6917 4.3171 7.1351 21 7 7.8061 3.4257 7.5232 22 14 9.5160 5.4242 8.3937 23 1 10.4668 6.3339 7.7054 24 1 8.4841 6.2277 9.0973 25 1 10.2518 4.5917 9.3789 26 7 5.9513 3.2298 0.0226 27 8 4.7996 2.8499 0.0159 28 6 3.5319 -0.7553 0.0043 29 7 2.2834 -1.1352 -0.0022 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5140 33 1 1.9191 2.1186 0.0004 34 1 8.4964 1.9164 -2.0787 35 1 8.3223 3.6349 -1.6455 36 1 10.2647 4.7710 -0.6371 37 1 11.7491 3.8184 -0.3921 38 1 10.4807 4.1618 1.7381 39 1 10.6157 2.4404 1.3043 40 1 7.1251 3.1235 2.3834 41 1 8.4234 1.9236 2.5905 42 1 9.9555 3.7146 3.3610 43 1 8.6572 4.9145 3.1537 44 1 7.2697 3.6980 4.8108 45 1 8.5684 2.4986 5.0175 46 1 7.5806 3.3433 8.4631 47 1 4.3932 -1.4070 0.0075 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374843182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:01 Heat of formation + Delta-G solvation = 85.339944 kcal Electronic energy + Delta-G solvation = -30180.274064 eV Core-core repulsion = 25981.587558 eV Total energy + Delta-G solvation = -4198.686506 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -46.54864 -42.30092 -40.95960 -37.75695 -36.95188 -35.60168 -34.90833 -33.85609 -33.16737 -32.18476 -30.85297 -29.65789 -27.99571 -27.24193 -26.29778 -25.12655 -24.35378 -23.86214 -22.46481 -21.99003 -21.57425 -20.83868 -19.18651 -19.05781 -18.55560 -17.93650 -17.51384 -17.24401 -16.53662 -16.51549 -16.51092 -16.29774 -16.21988 -15.82812 -15.28420 -15.18315 -15.04240 -14.32844 -14.27337 -13.92020 -13.75015 -13.70800 -13.56485 -13.40039 -13.37123 -13.19029 -12.80904 -12.77575 -12.51488 -12.45507 -12.20261 -12.13861 -11.94280 -11.91771 -11.57053 -11.49737 -11.40855 -11.19383 -10.74810 -10.64509 -10.59983 -9.58238 -9.50617 -8.23533 -6.35526 -0.17529 0.71552 1.01695 1.31545 1.38308 1.38911 1.52629 1.83930 1.87737 2.26810 2.38067 2.51038 2.91718 3.01194 3.09669 3.55335 3.62734 3.79880 3.86032 3.89769 3.96523 4.06542 4.09937 4.18786 4.26640 4.34477 4.45156 4.47941 4.49147 4.55850 4.57766 4.64444 4.70663 4.72189 4.76281 4.84387 4.92770 4.93769 4.97495 5.12993 5.28340 5.43907 5.61250 5.71733 5.77862 5.79876 5.80859 6.00425 6.18986 6.42378 6.80755 7.17440 7.34159 8.89025 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007728 B = 0.002904 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3622.392704 B = 9640.986859 C =12714.368736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.355 5.355 3 C 0.139 3.861 4 C -0.221 4.221 5 C 0.277 3.723 6 N -0.503 5.503 7 C 0.177 3.823 8 C 0.140 3.860 9 H 0.073 0.927 10 C 0.087 3.913 11 O -0.385 6.385 12 C 0.064 3.936 13 C 0.012 3.988 14 N -0.529 5.529 15 C 0.076 3.924 16 C -0.091 4.091 17 C 0.029 3.971 18 C -0.540 4.540 19 H 0.064 0.936 20 C -0.003 4.003 21 N -0.935 5.935 22 Si 0.969 3.031 23 H -0.259 1.259 24 H -0.278 1.278 25 H -0.277 1.277 26 N -0.379 5.379 27 O 0.079 5.921 28 C 0.105 3.895 29 N -0.320 5.320 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.231 0.769 34 H 0.117 0.883 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.130 0.870 38 H 0.103 0.897 39 H 0.044 0.956 40 H 0.046 0.954 41 H 0.021 0.979 42 H 0.067 0.933 43 H 0.057 0.943 44 H -0.017 1.017 45 H -0.013 1.013 46 H 0.264 0.736 47 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.698 -4.626 -21.970 25.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.133 5.133 3 C -0.016 4.016 4 C -0.236 4.236 5 C 0.061 3.939 6 N -0.237 5.237 7 C -0.096 4.096 8 C 0.030 3.970 9 H 0.091 0.909 10 C 0.008 3.992 11 O -0.303 6.303 12 C -0.012 4.012 13 C -0.116 4.116 14 N -0.255 5.255 15 C -0.052 4.052 16 C -0.129 4.129 17 C -0.009 4.009 18 C -0.578 4.578 19 H 0.082 0.918 20 C -0.200 4.200 21 N -0.575 5.575 22 Si 0.793 3.207 23 H -0.183 1.183 24 H -0.204 1.204 25 H -0.203 1.203 26 N -0.087 5.087 27 O 0.020 5.980 28 C -0.083 4.083 29 N -0.140 5.140 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.142 0.858 33 H 0.247 0.753 34 H 0.135 0.865 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.147 0.853 38 H 0.121 0.879 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.002 0.998 45 H 0.006 0.994 46 H 0.073 0.927 47 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -12.202 -4.840 -22.092 25.698 hybrid contribution 0.616 0.122 1.663 1.777 sum -11.586 -4.718 -20.430 23.955 Atomic orbital electron populations 1.22495 0.70206 1.06901 1.05789 1.48834 1.08887 1.02965 1.52567 1.23582 0.88626 0.95692 0.93710 1.17489 0.87638 0.91674 1.26810 1.25568 0.92995 0.81689 0.93675 1.72089 1.00509 1.27738 1.23361 1.25260 0.99241 0.83663 1.01461 1.20571 0.83880 0.96040 0.96539 0.90896 1.22574 0.81518 1.02447 0.92625 1.87990 1.20505 1.61626 1.60219 1.22913 1.01170 0.91800 0.85322 1.23052 0.85781 1.02363 1.00372 1.62291 1.11835 1.45787 1.05624 1.21947 0.98572 0.97074 0.87602 1.21515 0.99526 0.98523 0.93314 1.18931 0.94563 0.95118 0.92285 1.21668 1.23939 1.19515 0.92678 0.91777 1.26047 0.95760 0.97116 1.01118 1.70122 1.34292 1.36357 1.16770 0.85338 0.78459 0.78557 0.78337 1.18289 1.20354 1.20259 1.74628 0.89492 1.23311 1.21248 1.85378 1.23176 1.23105 1.66389 1.24173 0.95650 0.92964 0.95514 1.77302 1.01617 1.09132 1.25953 0.88154 0.88523 0.85819 0.75266 0.86509 0.91827 0.91491 0.85254 0.87922 0.93777 0.93580 0.96055 0.91485 0.92474 0.99836 0.99424 0.92745 0.78247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.27 11.45 127.77 1.46 1.74 16 2 N -0.36 -4.63 3.99 -367.71 -1.47 -6.10 16 3 C 0.14 1.80 11.50 84.21 0.97 2.77 16 4 C -0.22 -4.53 6.12 -20.15 -0.12 -4.65 16 5 C 0.28 7.34 8.28 87.23 0.72 8.06 16 6 N -0.50 -15.39 11.59 -302.65 -3.51 -18.90 16 7 C 0.18 5.65 5.66 138.52 0.78 6.43 16 8 C 0.14 4.21 2.49 44.18 0.11 4.32 16 9 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 10 C 0.09 2.15 6.28 72.01 0.45 2.60 16 11 O -0.39 -9.59 10.82 -148.98 -1.61 -11.21 16 12 C 0.06 1.42 7.01 72.01 0.50 1.93 16 13 C 0.01 0.32 4.94 86.31 0.43 0.75 16 14 N -0.53 -17.37 4.67 -874.42 -4.09 -21.46 16 15 C 0.08 3.01 4.73 86.30 0.41 3.41 16 16 C -0.09 -3.98 4.42 30.59 0.14 -3.85 16 17 C 0.03 1.60 4.97 29.85 0.15 1.74 16 18 C -0.54 -31.58 9.11 25.60 0.23 -31.34 16 19 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 20 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 21 N -0.94 -58.45 13.29 21.45 0.28 -58.16 16 22 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 23 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 26 N -0.38 -12.38 11.92 -58.51 -0.70 -13.08 16 27 O 0.08 2.24 11.34 69.53 0.79 3.03 16 28 C 0.10 2.15 12.01 85.62 1.03 3.18 16 29 N -0.32 -6.31 12.51 -56.30 -0.70 -7.01 16 30 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.12 -0.27 8.14 -2.39 -0.02 -0.29 16 33 H 0.23 1.04 8.06 -2.91 -0.02 1.02 16 34 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.10 2.87 6.05 -2.39 -0.01 2.86 16 39 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.05 2.01 7.25 -2.39 -0.02 1.99 16 41 H 0.02 0.88 8.08 -2.39 -0.02 0.86 16 42 H 0.07 2.72 6.28 -2.39 -0.01 2.71 16 43 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 44 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 45 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 46 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 47 H 0.20 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -79.54 392.93 -0.27 -79.81 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 0.98 Total: 8.70 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 7.72 Total: -2.62 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -10.18 Total: -124.70 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.82 Total: -8.18 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -79.54 -0.27 -79.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374843182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.150 kcal (2) G-P(sol) polarization free energy of solvation -79.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds