Wall clock time and date at job start Wed Apr 1 2020 05:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34498 * 125.78346 * 2 1 4 4 C 1.37899 * 107.41072 * 180.26704 * 3 2 1 5 5 C 1.47615 * 126.38327 * 179.73919 * 4 3 2 6 6 N 1.32245 * 126.68655 * 179.70938 * 5 4 3 7 7 C 1.34212 * 105.52555 * 179.86021 * 6 5 4 8 8 C 1.50701 * 126.18127 * 180.12926 * 7 6 5 9 9 H 1.08997 * 109.50664 * 15.21692 * 8 7 6 10 10 C 1.53100 * 109.50631 * 255.08654 * 8 7 6 11 11 O 1.43018 * 109.25739 * 183.21479 * 10 8 7 12 12 C 1.43009 * 113.73997 * 58.67285 * 11 10 8 13 13 C 1.53103 * 109.25866 * 301.32715 * 12 11 10 14 14 N 1.47014 * 109.50872 * 135.30384 * 8 7 6 15 15 C 1.46895 * 110.99941 * 302.32431 * 14 8 7 16 16 C 1.52993 * 109.47266 * 189.99889 * 15 14 8 17 17 C 1.53000 * 109.47403 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47304 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00425 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00226 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00153 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99827 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46863 * 89.99949 * 22 20 18 24 24 H 1.48494 * 109.47522 * 209.99742 * 22 20 18 25 25 H 1.48499 * 109.47096 * 330.00208 * 22 20 18 26 26 N 1.30031 * 107.63840 * 0.40521 * 7 6 5 27 27 O 1.21284 * 110.51595 * 359.74262 * 26 7 6 28 28 C 1.41195 * 107.22854 * 359.61883 * 4 3 2 29 29 N 1.30507 * 108.07040 * 0.38802 * 28 4 3 30 30 H 1.09003 * 109.47401 * 89.99928 * 1 2 3 31 31 H 1.09001 * 109.46858 * 210.00118 * 1 2 3 32 32 H 1.09005 * 109.47465 * 329.99707 * 1 2 3 33 33 H 1.08002 * 126.29086 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.50422 * 303.15060 * 10 8 7 35 35 H 1.09000 * 109.51026 * 63.28003 * 10 8 7 36 36 H 1.08997 * 109.50966 * 181.39181 * 12 11 10 37 37 H 1.09001 * 109.51083 * 61.25985 * 12 11 10 38 38 H 1.08993 * 109.50347 * 296.91871 * 13 12 11 39 39 H 1.08999 * 109.50846 * 176.78500 * 13 12 11 40 40 H 1.09000 * 109.47505 * 310.00043 * 15 14 8 41 41 H 1.09003 * 109.46975 * 70.00110 * 15 14 8 42 42 H 1.09008 * 109.47457 * 300.00039 * 16 15 14 43 43 H 1.08998 * 109.47645 * 60.00215 * 16 15 14 44 44 H 1.09000 * 109.47149 * 300.00019 * 17 16 15 45 45 H 1.09003 * 109.47195 * 60.00002 * 17 16 15 46 46 H 0.97000 * 119.99435 * 180.02562 * 21 20 18 47 47 H 1.07999 * 125.96524 * 180.13005 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2514 1.0911 0.0000 4 6 3.5601 0.6564 -0.0061 5 6 4.7656 1.5083 -0.0138 6 7 6.0229 1.0981 -0.0143 7 6 6.7655 2.2160 -0.0256 8 6 8.2709 2.2840 -0.0334 9 1 8.6779 1.3083 -0.2985 10 6 8.7717 2.6876 1.3559 11 8 10.1950 2.8236 1.3232 12 6 10.6595 3.7895 0.3764 13 6 10.1779 3.3971 -1.0230 14 7 8.7121 3.2836 -1.0171 15 6 8.2036 2.9632 -2.3575 16 6 8.8780 3.8698 -3.3890 17 6 8.3479 3.5365 -4.7850 18 6 9.0118 4.4300 -5.8009 19 1 9.7393 5.1620 -5.4829 20 6 8.6911 4.3122 -7.1367 21 7 9.2708 5.0916 -8.0234 22 14 7.4332 3.0455 -7.6871 23 1 6.0786 3.6538 -7.6710 24 1 7.7562 2.5930 -9.0641 25 1 7.4648 1.8830 -6.7638 26 7 5.9513 3.2299 -0.0225 27 8 4.7995 2.8501 -0.0157 28 6 3.5319 -0.7552 -0.0009 29 7 2.2834 -1.1352 -0.0006 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 1.9190 2.1187 -0.0004 34 1 8.3218 3.6380 1.6430 35 1 8.4959 1.9203 2.0793 36 1 11.7490 3.8191 0.3913 37 1 10.2645 4.7719 0.6350 38 1 10.6159 2.4393 -1.3033 39 1 10.4810 4.1604 -1.7396 40 1 8.4239 1.9213 -2.5903 41 1 7.1254 3.1214 -2.3845 42 1 8.6577 4.9117 -3.1563 43 1 9.9561 3.7117 -3.3621 44 1 8.5679 2.4947 -5.0180 45 1 7.2698 3.6950 -4.8117 46 1 9.0449 5.0089 -8.9631 47 1 4.3932 -1.4068 -0.0016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374843201.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:07 Heat of formation + Delta-G solvation = 116.620034 kcal Electronic energy + Delta-G solvation = -30272.866453 eV Core-core repulsion = 26075.536354 eV Total energy + Delta-G solvation = -4197.330099 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.52000 -41.70033 -39.85737 -36.58167 -35.82954 -34.35696 -33.58911 -32.91454 -31.64520 -31.16245 -30.07766 -28.38075 -27.54488 -25.73388 -25.25451 -24.22007 -22.92526 -22.32373 -21.45716 -21.32303 -20.04336 -19.73526 -18.24814 -18.11556 -17.12945 -16.82651 -16.37675 -16.20697 -16.03261 -15.56053 -15.19902 -15.13069 -14.93701 -14.54155 -14.32558 -13.84701 -13.68770 -13.62115 -13.39359 -13.14917 -12.81320 -12.58847 -12.52941 -12.33407 -12.00538 -11.81800 -11.57882 -11.46429 -11.39550 -11.02855 -10.96844 -10.90059 -10.69108 -10.52792 -10.08791 -9.91763 -9.83075 -9.73973 -9.56586 -9.16937 -8.76455 -8.53659 -8.33340 -6.04324 -4.02068 0.64030 1.43005 1.79728 1.96191 2.64922 2.71860 3.24477 3.30408 3.37557 3.42080 3.60018 3.83503 3.95266 4.18884 4.29999 4.45361 4.56496 4.60419 4.68777 4.82644 4.86089 4.95449 4.99181 5.04628 5.11553 5.24247 5.25696 5.29908 5.50471 5.58392 5.62692 5.63822 5.69946 5.84779 5.90579 5.92273 5.95580 6.07304 6.24320 6.44706 6.50778 6.80877 6.93085 7.03394 7.04500 7.07771 7.28226 7.42424 7.79220 8.17591 8.54013 9.00477 9.58458 11.09145 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007171 B = 0.003288 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3903.773962 B = 8512.770644 C =11839.193180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.361 5.361 3 C 0.115 3.885 4 C -0.187 4.187 5 C 0.263 3.737 6 N -0.478 5.478 7 C 0.185 3.815 8 C 0.140 3.860 9 H 0.080 0.920 10 C 0.078 3.922 11 O -0.380 6.380 12 C 0.060 3.940 13 C 0.014 3.986 14 N -0.526 5.526 15 C 0.055 3.945 16 C -0.102 4.102 17 C -0.012 4.012 18 C -0.518 4.518 19 H 0.072 0.928 20 C 0.066 3.934 21 N -0.904 5.904 22 Si 0.879 3.121 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.267 1.267 26 N -0.354 5.354 27 O 0.078 5.922 28 C 0.111 3.889 29 N -0.294 5.294 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.193 0.807 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.047 0.953 39 H 0.106 0.894 40 H 0.032 0.968 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.013 0.987 45 H 0.010 0.990 46 H 0.263 0.737 47 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.755 -9.552 22.689 28.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.139 5.139 3 C -0.039 4.039 4 C -0.201 4.201 5 C 0.045 3.955 6 N -0.212 5.212 7 C -0.089 4.089 8 C 0.029 3.971 9 H 0.098 0.902 10 C 0.000 4.000 11 O -0.298 6.298 12 C -0.017 4.017 13 C -0.113 4.113 14 N -0.252 5.252 15 C -0.072 4.072 16 C -0.140 4.140 17 C -0.050 4.050 18 C -0.556 4.556 19 H 0.090 0.910 20 C -0.134 4.134 21 N -0.543 5.543 22 Si 0.706 3.294 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.191 1.191 26 N -0.060 5.060 27 O 0.018 5.982 28 C -0.078 4.078 29 N -0.114 5.114 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.210 0.790 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.125 0.875 40 H 0.051 0.949 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.032 0.968 45 H 0.028 0.972 46 H 0.073 0.927 47 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -15.144 -9.638 22.756 28.984 hybrid contribution -0.259 -0.553 -1.106 1.263 sum -15.403 -10.191 21.651 28.458 Atomic orbital electron populations 1.22062 0.72862 1.05232 1.04302 1.48416 1.07476 1.03691 1.54291 1.23032 0.89792 0.94254 0.96797 1.17315 0.87293 0.91771 1.23745 1.25165 0.92632 0.81949 0.95706 1.72099 0.99675 1.27709 1.21716 1.25139 0.98943 0.83429 1.01382 1.20497 0.83901 0.96746 0.95936 0.90241 1.22576 0.81742 1.01973 0.93701 1.87996 1.20420 1.61294 1.60069 1.22809 0.99669 0.92050 0.87174 1.22957 0.87058 1.02559 0.98733 1.62306 1.10552 1.45323 1.07010 1.22355 0.99956 0.98343 0.86540 1.21603 0.99212 0.98755 0.94386 1.19533 0.96103 0.96958 0.92364 1.21110 1.24425 1.19283 0.90776 0.90962 1.25020 0.96019 0.95662 0.96748 1.69915 1.43293 1.39131 1.01923 0.86794 0.82084 0.82639 0.77883 1.20301 1.21316 1.19131 1.74694 0.88819 1.22631 1.19890 1.85440 1.23962 1.22712 1.66131 1.24055 0.95280 0.92769 0.95671 1.77352 1.01430 1.07553 1.25034 0.89845 0.88624 0.88733 0.78968 0.91719 0.88246 0.88011 0.91926 0.93506 0.87548 0.94945 0.91539 0.91754 0.92306 0.96830 0.97191 0.92748 0.78448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.24 11.45 59.85 0.69 0.92 16 2 N -0.36 -2.48 3.99 -67.58 -0.27 -2.75 16 3 C 0.11 0.78 11.50 -16.51 -0.19 0.59 16 4 C -0.19 -1.81 6.12 -105.07 -0.64 -2.45 16 5 C 0.26 3.24 8.28 -13.88 -0.11 3.12 16 6 N -0.48 -6.72 11.59 -10.17 -0.12 -6.83 16 7 C 0.18 2.74 5.66 -156.56 -0.89 1.86 16 8 C 0.14 1.99 2.49 -68.75 -0.17 1.82 16 9 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 10 C 0.08 0.98 6.27 37.21 0.23 1.21 16 11 O -0.38 -4.93 10.83 -35.23 -0.38 -5.31 16 12 C 0.06 0.70 7.01 37.21 0.26 0.96 16 13 C 0.01 0.20 4.94 -3.71 -0.02 0.18 16 14 N -0.53 -8.24 4.67 -227.73 -1.06 -9.30 16 15 C 0.05 0.99 4.73 -3.83 -0.02 0.98 16 16 C -0.10 -2.09 4.42 -26.73 -0.12 -2.21 16 17 C -0.01 -0.29 4.04 -27.88 -0.11 -0.40 16 18 C -0.52 -15.08 9.66 -34.44 -0.33 -15.42 16 19 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -28.29 13.96 55.43 0.77 -27.51 16 22 Si 0.88 22.31 27.47 -169.99 -4.67 17.64 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 26 N -0.35 -5.43 11.92 31.21 0.37 -5.06 16 27 O 0.08 1.04 11.34 16.59 0.19 1.22 16 28 C 0.11 1.05 12.01 -16.99 -0.20 0.84 16 29 N -0.29 -2.80 12.51 30.85 0.39 -2.42 16 30 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 33 H 0.19 0.64 8.06 -52.49 -0.42 0.21 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.11 1.51 6.05 -51.93 -0.31 1.20 16 40 H 0.03 0.59 8.08 -51.93 -0.42 0.17 16 41 H 0.07 1.29 7.25 -51.93 -0.38 0.91 16 42 H 0.06 1.36 8.14 -51.92 -0.42 0.94 16 43 H 0.06 1.16 6.28 -51.93 -0.33 0.83 16 44 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 45 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 46 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 47 H 0.20 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 389.34 15.07 5.87 5.87 Total: -1.00 -36.22 389.34 -7.51 -43.73 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -6.86 Total: -3.16 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -1.73 Total: -6.11 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 0.08 Total: -53.88 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.19 Total: -4.09 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.22 -7.51 -43.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374843201.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.349 kcal (2) G-P(sol) polarization free energy of solvation -36.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds