Wall clock time and date at job start Wed Apr 1 2020 05:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34498 * 125.78346 * 2 1 4 4 C 1.37899 * 107.41072 * 180.26704 * 3 2 1 5 5 C 1.47615 * 126.38327 * 179.73919 * 4 3 2 6 6 N 1.32245 * 126.68655 * 179.70938 * 5 4 3 7 7 C 1.34212 * 105.52555 * 179.86021 * 6 5 4 8 8 C 1.50701 * 126.18127 * 180.12926 * 7 6 5 9 9 H 1.08997 * 109.50664 * 15.21692 * 8 7 6 10 10 C 1.53100 * 109.50631 * 255.08654 * 8 7 6 11 11 O 1.43018 * 109.25739 * 183.21479 * 10 8 7 12 12 C 1.43009 * 113.73997 * 58.67285 * 11 10 8 13 13 C 1.53103 * 109.25866 * 301.32715 * 12 11 10 14 14 N 1.47014 * 109.50872 * 135.30384 * 8 7 6 15 15 C 1.46895 * 110.99941 * 302.32431 * 14 8 7 16 16 C 1.52993 * 109.47266 * 189.99889 * 15 14 8 17 17 C 1.53000 * 109.47403 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47304 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00425 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00226 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00153 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99827 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46863 * 89.99949 * 22 20 18 24 24 H 1.48494 * 109.47522 * 209.99742 * 22 20 18 25 25 H 1.48499 * 109.47096 * 330.00208 * 22 20 18 26 26 N 1.30031 * 107.63840 * 0.40521 * 7 6 5 27 27 O 1.21284 * 110.51595 * 359.74262 * 26 7 6 28 28 C 1.41195 * 107.22854 * 359.61883 * 4 3 2 29 29 N 1.30507 * 108.07040 * 0.38802 * 28 4 3 30 30 H 1.09003 * 109.47401 * 89.99928 * 1 2 3 31 31 H 1.09001 * 109.46858 * 210.00118 * 1 2 3 32 32 H 1.09005 * 109.47465 * 329.99707 * 1 2 3 33 33 H 1.08002 * 126.29086 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.50422 * 303.15060 * 10 8 7 35 35 H 1.09000 * 109.51026 * 63.28003 * 10 8 7 36 36 H 1.08997 * 109.50966 * 181.39181 * 12 11 10 37 37 H 1.09001 * 109.51083 * 61.25985 * 12 11 10 38 38 H 1.08993 * 109.50347 * 296.91871 * 13 12 11 39 39 H 1.08999 * 109.50846 * 176.78500 * 13 12 11 40 40 H 1.09000 * 109.47505 * 310.00043 * 15 14 8 41 41 H 1.09003 * 109.46975 * 70.00110 * 15 14 8 42 42 H 1.09008 * 109.47457 * 300.00039 * 16 15 14 43 43 H 1.08998 * 109.47645 * 60.00215 * 16 15 14 44 44 H 1.09000 * 109.47149 * 300.00019 * 17 16 15 45 45 H 1.09003 * 109.47195 * 60.00002 * 17 16 15 46 46 H 0.97000 * 119.99435 * 180.02562 * 21 20 18 47 47 H 1.07999 * 125.96524 * 180.13005 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2514 1.0911 0.0000 4 6 3.5601 0.6564 -0.0061 5 6 4.7656 1.5083 -0.0138 6 7 6.0229 1.0981 -0.0143 7 6 6.7655 2.2160 -0.0256 8 6 8.2709 2.2840 -0.0334 9 1 8.6779 1.3083 -0.2985 10 6 8.7717 2.6876 1.3559 11 8 10.1950 2.8236 1.3232 12 6 10.6595 3.7895 0.3764 13 6 10.1779 3.3971 -1.0230 14 7 8.7121 3.2836 -1.0171 15 6 8.2036 2.9632 -2.3575 16 6 8.8780 3.8698 -3.3890 17 6 8.3479 3.5365 -4.7850 18 6 9.0118 4.4300 -5.8009 19 1 9.7393 5.1620 -5.4829 20 6 8.6911 4.3122 -7.1367 21 7 9.2708 5.0916 -8.0234 22 14 7.4332 3.0455 -7.6871 23 1 6.0786 3.6538 -7.6710 24 1 7.7562 2.5930 -9.0641 25 1 7.4648 1.8830 -6.7638 26 7 5.9513 3.2299 -0.0225 27 8 4.7995 2.8501 -0.0157 28 6 3.5319 -0.7552 -0.0009 29 7 2.2834 -1.1352 -0.0006 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 1.9190 2.1187 -0.0004 34 1 8.3218 3.6380 1.6430 35 1 8.4959 1.9203 2.0793 36 1 11.7490 3.8191 0.3913 37 1 10.2645 4.7719 0.6350 38 1 10.6159 2.4393 -1.3033 39 1 10.4810 4.1604 -1.7396 40 1 8.4239 1.9213 -2.5903 41 1 7.1254 3.1214 -2.3845 42 1 8.6577 4.9117 -3.1563 43 1 9.9561 3.7117 -3.3621 44 1 8.5679 2.4947 -5.0180 45 1 7.2698 3.6950 -4.8117 46 1 9.0449 5.0089 -8.9631 47 1 4.3932 -1.4068 -0.0016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374843201.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:06 Heat of formation + Delta-G solvation = 88.269696 kcal Electronic energy + Delta-G solvation = -30274.095816 eV Core-core repulsion = 26075.536354 eV Total energy + Delta-G solvation = -4198.559462 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -46.54433 -42.29748 -40.96629 -37.77789 -36.95611 -35.57933 -34.89915 -33.88811 -33.36002 -32.20538 -30.85045 -29.92951 -27.99677 -27.34620 -26.29706 -25.11861 -24.02332 -23.86468 -22.42595 -21.98257 -21.56002 -20.84541 -19.18533 -19.07945 -18.90411 -17.92978 -17.57740 -17.24937 -16.54201 -16.51337 -16.35074 -16.31684 -16.21992 -15.84585 -15.29619 -15.19109 -15.03235 -14.72730 -14.26972 -13.94282 -13.76578 -13.75058 -13.69742 -13.42226 -13.36892 -13.25982 -12.85852 -12.74028 -12.53388 -12.36563 -12.17358 -11.95706 -11.91289 -11.82451 -11.68809 -11.51143 -11.46097 -11.31867 -10.81354 -10.74646 -10.64646 -9.57377 -9.50279 -8.33541 -6.37512 -0.17005 0.71975 1.02193 1.30459 1.31646 1.32095 1.44101 1.85389 1.87363 2.26413 2.31427 2.50535 2.91394 3.01195 3.01476 3.55786 3.62484 3.80269 3.84547 3.89608 3.96187 4.06617 4.09530 4.17255 4.25411 4.32087 4.44572 4.45540 4.47667 4.54964 4.57881 4.64320 4.66192 4.72442 4.76186 4.79112 4.85789 4.90973 4.95536 5.02763 5.28978 5.36929 5.47162 5.58288 5.74515 5.78544 5.80062 5.99978 6.24070 6.42936 6.69463 7.18322 7.26980 8.83161 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007171 B = 0.003288 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3903.773962 B = 8512.770644 C =11839.193180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.356 5.356 3 C 0.139 3.861 4 C -0.220 4.220 5 C 0.277 3.723 6 N -0.501 5.501 7 C 0.178 3.822 8 C 0.141 3.859 9 H 0.077 0.923 10 C 0.085 3.915 11 O -0.385 6.385 12 C 0.064 3.936 13 C 0.012 3.988 14 N -0.532 5.532 15 C 0.072 3.928 16 C -0.090 4.090 17 C -0.008 4.008 18 C -0.530 4.530 19 H 0.036 0.964 20 C 0.007 3.993 21 N -0.948 5.948 22 Si 0.947 3.053 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.253 1.253 26 N -0.379 5.379 27 O 0.080 5.920 28 C 0.105 3.895 29 N -0.321 5.321 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.127 0.873 33 H 0.231 0.769 34 H 0.062 0.938 35 H 0.117 0.883 36 H 0.128 0.872 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.099 0.901 40 H 0.031 0.969 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.016 0.984 45 H 0.010 0.990 46 H 0.267 0.733 47 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.892 -10.615 23.873 31.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.133 5.133 3 C -0.016 4.016 4 C -0.235 4.235 5 C 0.061 3.939 6 N -0.235 5.235 7 C -0.096 4.096 8 C 0.031 3.969 9 H 0.094 0.906 10 C 0.007 3.993 11 O -0.303 6.303 12 C -0.013 4.013 13 C -0.115 4.115 14 N -0.258 5.258 15 C -0.056 4.056 16 C -0.127 4.127 17 C -0.046 4.046 18 C -0.568 4.568 19 H 0.054 0.946 20 C -0.190 4.190 21 N -0.588 5.588 22 Si 0.770 3.230 23 H -0.192 1.192 24 H -0.204 1.204 25 H -0.177 1.177 26 N -0.087 5.087 27 O 0.020 5.980 28 C -0.083 4.083 29 N -0.141 5.141 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.145 0.855 33 H 0.247 0.753 34 H 0.080 0.920 35 H 0.135 0.865 36 H 0.145 0.855 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.117 0.883 40 H 0.049 0.951 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.034 0.966 45 H 0.029 0.971 46 H 0.076 0.924 47 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -17.301 -10.724 23.965 31.443 hybrid contribution 0.313 -0.190 -1.451 1.496 sum -16.988 -10.913 22.515 30.242 Atomic orbital electron populations 1.22488 0.70271 1.07072 1.05560 1.48834 1.08865 1.03001 1.52608 1.23592 0.88666 0.95668 0.93711 1.17470 0.87609 0.91641 1.26790 1.25558 0.92968 0.81686 0.93703 1.72094 1.00437 1.27626 1.23334 1.25232 0.99162 0.83676 1.01533 1.20554 0.83927 0.96090 0.96344 0.90574 1.22589 0.81484 1.02395 0.92874 1.87996 1.20575 1.61595 1.60155 1.22896 1.01109 0.91796 0.85483 1.23027 0.85930 1.02363 1.00174 1.62260 1.11707 1.45989 1.05829 1.22012 0.98862 0.97332 0.87380 1.21400 0.99623 0.98704 0.93010 1.19458 0.95713 0.95930 0.93468 1.21417 1.23979 1.19260 0.92188 0.94552 1.25965 0.98287 0.97945 0.96809 1.70055 1.45140 1.41133 1.02517 0.85706 0.79350 0.80070 0.77831 1.19153 1.20436 1.17701 1.74651 0.89508 1.23314 1.21199 1.85393 1.23153 1.23103 1.66358 1.24179 0.95621 0.92978 0.95484 1.77311 1.01672 1.09151 1.25958 0.88812 0.88298 0.85501 0.75292 0.91960 0.86515 0.85460 0.91665 0.93506 0.88273 0.95118 0.92824 0.92775 0.91766 0.96555 0.97121 0.92375 0.78196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.15 11.45 127.77 1.46 1.62 16 2 N -0.36 -4.01 3.99 -367.71 -1.47 -5.48 16 3 C 0.14 1.52 11.50 84.20 0.97 2.49 16 4 C -0.22 -3.99 6.12 -20.16 -0.12 -4.12 16 5 C 0.28 6.62 8.28 87.22 0.72 7.34 16 6 N -0.50 -13.93 11.59 -302.64 -3.51 -17.44 16 7 C 0.18 5.21 5.66 138.53 0.78 5.99 16 8 C 0.14 3.94 2.49 44.18 0.11 4.05 16 9 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 10 C 0.08 2.01 6.27 72.02 0.45 2.46 16 11 O -0.39 -9.35 10.83 -148.98 -1.61 -10.96 16 12 C 0.06 1.40 7.01 72.02 0.50 1.90 16 13 C 0.01 0.33 4.94 86.32 0.43 0.76 16 14 N -0.53 -16.44 4.67 -874.40 -4.09 -20.52 16 15 C 0.07 2.58 4.73 86.30 0.41 2.99 16 16 C -0.09 -3.70 4.42 30.59 0.14 -3.56 16 17 C -0.01 -0.38 4.04 29.85 0.12 -0.26 16 18 C -0.53 -31.51 9.66 25.60 0.25 -31.26 16 19 H 0.04 2.35 7.99 -2.91 -0.02 2.32 16 20 C 0.01 0.42 5.47 84.66 0.46 0.88 16 21 N -0.95 -60.38 13.96 21.45 0.30 -60.09 16 22 Si 0.95 45.66 27.47 68.60 1.88 47.55 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 25 H -0.25 -11.57 6.54 99.48 0.65 -10.92 16 26 N -0.38 -11.48 11.92 -58.50 -0.70 -12.18 16 27 O 0.08 2.05 11.34 69.43 0.79 2.84 16 28 C 0.11 1.93 12.01 85.62 1.03 2.96 16 29 N -0.32 -5.73 12.51 -56.31 -0.70 -6.43 16 30 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.13 -0.56 8.14 -2.38 -0.02 -0.58 16 33 H 0.23 0.59 8.06 -2.91 -0.02 0.57 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.10 2.79 6.05 -2.39 -0.01 2.78 16 40 H 0.03 1.11 8.08 -2.39 -0.02 1.09 16 41 H 0.05 2.07 7.25 -2.39 -0.02 2.05 16 42 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 43 H 0.06 2.56 6.28 -2.39 -0.01 2.54 16 44 H 0.02 0.79 7.20 -2.39 -0.02 0.77 16 45 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 46 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 47 H 0.20 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -79.36 389.34 -0.47 -79.82 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 0.93 Total: 8.65 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 7.71 Total: -5.76 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -10.16 Total: -122.13 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.83 Total: -8.12 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.88 Total: 47.55 kcal Total: -79.36 -0.47 -79.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374843201.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.092 kcal (2) G-P(sol) polarization free energy of solvation -79.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds