Wall clock time and date at job start Wed Apr 1 2020 06:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99664 * 2 1 4 4 C 1.38822 * 120.00172 * 0.02562 * 3 2 1 5 5 C 1.38203 * 120.18371 * 180.02562 * 4 3 2 6 6 C 1.38078 * 120.17353 * 359.97438 * 5 4 3 7 7 C 1.39299 * 119.99238 * 0.02562 * 6 5 4 8 8 C 1.48473 * 120.08641 * 179.97438 * 7 6 5 9 9 N 1.34046 * 126.67333 * 179.97438 * 8 7 6 10 10 N 1.28985 * 107.26861 * 180.02562 * 9 8 7 11 11 N 1.28725 * 108.94221 * 359.97438 * 10 9 8 12 12 C 1.46502 * 125.33848 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47529 * 90.02680 * 12 11 10 14 14 H 1.09006 * 109.46907 * 304.99521 * 13 12 11 15 15 O 1.42899 * 109.47321 * 64.99723 * 13 12 11 16 16 C 1.53002 * 109.47518 * 185.00199 * 13 12 11 17 17 N 1.46892 * 109.47225 * 178.46415 * 16 13 12 18 18 C 1.46897 * 111.00010 * 164.06584 * 17 16 13 19 19 C 1.46906 * 110.99720 * 288.01881 * 17 16 13 20 20 C 1.50698 * 109.46821 * 170.00457 * 19 17 16 21 21 H 1.07997 * 120.00745 * 359.97438 * 20 19 17 22 22 C 1.37881 * 119.99697 * 180.02562 * 20 19 17 23 23 N 1.31517 * 119.99967 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00106 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46842 * 89.99991 * 24 22 20 26 26 H 1.48498 * 109.47528 * 209.99910 * 24 22 20 27 27 H 1.48502 * 109.47368 * 330.00273 * 24 22 20 28 28 N 1.28872 * 109.32111 * 0.24438 * 11 10 9 29 29 C 1.38517 * 119.99291 * 180.30006 * 3 2 1 30 30 H 1.08998 * 109.47425 * 299.99742 * 1 2 3 31 31 H 1.08999 * 109.47480 * 60.00461 * 1 2 3 32 32 H 1.09005 * 109.47029 * 179.97438 * 1 2 3 33 33 H 1.08003 * 119.90379 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.90807 * 179.97438 * 5 4 3 35 35 H 1.07999 * 119.99733 * 180.02562 * 6 5 4 36 36 H 1.09004 * 109.47450 * 330.01978 * 12 11 10 37 37 H 1.09010 * 109.46865 * 210.02682 * 12 11 10 38 38 H 0.96695 * 114.00173 * 60.00468 * 15 13 12 39 39 H 1.08996 * 109.46997 * 58.45482 * 16 13 12 40 40 H 1.09002 * 109.46726 * 298.46176 * 16 13 12 41 41 H 1.09009 * 109.47307 * 65.42552 * 18 17 16 42 42 H 1.09003 * 109.47523 * 185.41800 * 18 17 16 43 43 H 1.08997 * 109.47702 * 305.42370 * 18 17 16 44 44 H 1.09002 * 109.46705 * 289.99771 * 19 17 16 45 45 H 1.08992 * 109.47324 * 50.00134 * 19 17 16 46 46 H 0.97002 * 119.99617 * 180.02562 * 23 22 20 47 47 H 1.07995 * 120.09044 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2898 2.3751 0.0005 5 6 1.9133 3.6086 0.0000 6 6 3.2917 3.6895 -0.0005 7 6 4.0575 2.5259 -0.0011 8 6 5.5398 2.6104 -0.0022 9 7 6.4003 1.5827 -0.0024 10 7 7.5905 2.0798 -0.0030 11 7 7.5068 3.3643 -0.0037 12 6 8.6443 4.2876 -0.0040 13 6 9.0402 4.6087 -1.4465 14 1 9.2334 3.6811 -1.9854 15 8 7.9772 5.3184 -2.0856 16 6 10.3034 5.4721 -1.4487 17 7 10.7044 5.7497 -2.8342 18 6 11.6632 6.8612 -2.8921 19 6 11.2535 4.5469 -3.4744 20 6 11.4239 4.7970 -4.9507 21 1 11.1512 5.7535 -5.3715 22 6 11.9270 3.8041 -5.7645 23 7 12.2586 2.6391 -5.2522 24 14 12.1376 4.1137 -7.5946 25 1 13.4921 4.6661 -7.8504 26 1 11.9760 2.8364 -8.3346 27 1 11.1122 5.0849 -8.0536 28 7 6.2656 3.7108 0.0015 29 6 3.4292 1.2833 -0.0063 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.2114 2.3168 0.0005 34 1 1.3207 4.5115 0.0000 35 1 3.7759 4.6548 -0.0005 36 1 9.4874 3.8258 0.5100 37 1 8.3655 5.2078 0.5097 38 1 7.7510 6.1560 -1.6587 39 1 11.1067 4.9419 -0.9371 40 1 10.1023 6.4114 -0.9335 41 1 12.5895 6.5681 -2.3978 42 1 11.8698 7.1090 -3.9333 43 1 11.2420 7.7311 -2.3883 44 1 12.2211 4.3095 -3.0321 45 1 10.5703 3.7111 -3.3239 46 1 12.6129 1.9407 -5.8248 47 1 4.0187 0.3785 -0.0108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414115407.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:07:14 Heat of formation + Delta-G solvation = 79.746594 kcal Electronic energy + Delta-G solvation = -29467.972641 eV Core-core repulsion = 25269.043590 eV Total energy + Delta-G solvation = -4198.929052 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -44.23457 -40.35003 -38.39721 -37.76481 -35.86488 -34.64617 -33.40577 -32.54285 -31.64997 -30.70095 -29.84619 -27.73723 -27.47472 -27.01868 -24.51593 -24.31012 -23.24696 -22.50920 -21.69824 -21.48353 -20.25787 -18.62454 -17.59586 -17.33123 -16.52937 -16.45659 -16.15117 -16.04573 -15.93352 -15.62030 -15.01696 -14.77320 -14.66423 -14.27854 -13.90797 -13.76702 -13.68346 -13.50729 -13.15019 -12.90907 -12.63702 -12.38456 -12.05036 -12.00425 -11.88667 -11.71854 -11.57096 -11.37987 -11.20635 -11.20032 -10.99013 -10.92062 -10.87083 -10.70807 -10.69282 -10.44362 -9.88342 -9.81470 -9.22220 -8.93155 -8.47105 -8.44944 -7.34806 -6.04182 -4.05291 0.58817 1.17439 1.33798 1.86088 2.38036 2.90112 3.31573 3.38332 3.42881 3.58837 3.69166 4.08578 4.21233 4.43950 4.45633 4.54300 4.62741 4.71028 4.77598 4.80258 4.96598 5.00679 5.12421 5.15522 5.16325 5.21338 5.28039 5.30613 5.38001 5.50022 5.68052 5.76475 5.79906 5.96128 5.97336 6.06689 6.12141 6.21011 6.22862 6.27553 6.38570 6.63545 7.07783 7.16916 7.22133 7.72699 7.85247 7.99914 8.11058 8.37692 8.47479 9.01301 9.58879 11.06840 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013239 B = 0.002097 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.383873 B =13351.847607 C =14299.543729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.124 3.876 4 C -0.195 4.195 5 C -0.082 4.082 6 C -0.118 4.118 7 C 0.035 3.965 8 C 0.197 3.803 9 N -0.274 5.274 10 N -0.055 5.055 11 N -0.121 5.121 12 C 0.092 3.908 13 C 0.100 3.900 14 H 0.117 0.883 15 O -0.529 6.529 16 C 0.030 3.970 17 N -0.530 5.530 18 C 0.041 3.959 19 C 0.191 3.809 20 C -0.507 4.507 21 H 0.063 0.937 22 C 0.055 3.945 23 N -0.898 5.898 24 Si 0.898 3.102 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.273 1.273 28 N -0.282 5.282 29 C -0.113 4.113 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.368 0.632 39 H 0.039 0.961 40 H 0.068 0.932 41 H 0.012 0.988 42 H 0.076 0.924 43 H 0.044 0.956 44 H -0.009 1.009 45 H 0.030 0.970 46 H 0.262 0.738 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.286 2.780 16.525 26.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.079 3.921 4 C -0.215 4.215 5 C -0.100 4.100 6 C -0.138 4.138 7 C 0.032 3.968 8 C -0.083 4.083 9 N -0.145 5.145 10 N -0.048 5.048 11 N -0.032 5.032 12 C -0.029 4.029 13 C 0.038 3.962 14 H 0.135 0.865 15 O -0.332 6.332 16 C -0.100 4.100 17 N -0.254 5.254 18 C -0.108 4.108 19 C 0.066 3.934 20 C -0.546 4.546 21 H 0.082 0.918 22 C -0.147 4.147 23 N -0.537 5.537 24 Si 0.726 3.274 25 H -0.208 1.208 26 H -0.212 1.212 27 H -0.197 1.197 28 N -0.133 5.133 29 C -0.133 4.133 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.119 0.881 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.214 0.786 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.031 0.969 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.009 0.991 45 H 0.048 0.952 46 H 0.071 0.929 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.799 1.841 15.812 25.405 hybrid contribution 0.359 0.546 -0.193 0.681 sum -19.440 2.387 15.619 25.051 Atomic orbital electron populations 1.23076 0.78280 1.04086 1.01351 1.86100 1.21402 1.26568 1.88753 1.18751 0.91787 0.84412 0.97137 1.21369 1.00225 0.92343 1.07533 1.20848 0.94023 0.97223 0.97956 1.21113 0.93567 0.97918 1.01223 1.16908 0.84893 0.93499 1.01490 1.23410 0.95909 0.84982 1.03991 1.76018 0.94417 1.25997 1.18091 1.78980 1.17877 0.92568 1.15351 1.49962 1.05471 1.05419 1.42390 1.23322 0.84402 0.92438 1.02750 1.22395 0.87673 0.97869 0.88293 0.86533 1.86781 1.52880 1.37217 1.56314 1.22556 0.95610 0.98426 0.93431 1.62018 1.41979 1.09600 1.11837 1.22201 0.93054 0.92969 1.02565 1.19812 0.92858 0.86245 0.94446 1.21108 1.41605 0.99713 0.92129 0.91844 1.24997 0.95634 0.95043 0.99009 1.69949 1.43952 1.04093 1.35742 0.86490 0.78349 0.77642 0.84915 1.20753 1.21212 1.19749 1.74823 0.90832 1.26605 1.21027 1.20357 0.91569 0.98031 1.03391 0.92612 0.92539 0.88144 0.85147 0.85000 0.84632 0.85533 0.86342 0.78631 0.94283 0.91309 0.96900 0.90576 0.93708 0.99091 0.95175 0.92866 0.83815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.14 10.49 -19.42 -0.20 -3.34 16 3 C 0.12 1.32 6.68 -39.26 -0.26 1.06 16 4 C -0.20 -1.66 9.03 -39.38 -0.36 -2.02 16 5 C -0.08 -0.70 10.03 -39.65 -0.40 -1.10 16 6 C -0.12 -1.25 9.69 -39.25 -0.38 -1.63 16 7 C 0.04 0.46 5.87 -104.91 -0.62 -0.16 16 8 C 0.20 3.00 7.94 -156.30 -1.24 1.76 16 9 N -0.27 -4.63 12.23 32.16 0.39 -4.23 16 10 N -0.06 -0.92 13.23 60.35 0.80 -0.12 16 11 N -0.12 -1.75 3.94 -10.63 -0.04 -1.79 16 12 C 0.09 1.00 6.23 -4.04 -0.03 0.98 16 13 C 0.10 1.47 3.23 -26.73 -0.09 1.39 16 14 H 0.12 2.22 6.55 -51.93 -0.34 1.88 16 15 O -0.53 -8.43 13.18 -35.23 -0.46 -8.89 16 16 C 0.03 0.45 4.63 -3.83 -0.02 0.43 16 17 N -0.53 -10.69 4.60 -244.37 -1.12 -11.81 16 18 C 0.04 0.73 9.32 60.06 0.56 1.29 16 19 C 0.19 4.85 4.57 -4.97 -0.02 4.83 16 20 C -0.51 -14.25 8.53 -34.44 -0.29 -14.54 16 21 H 0.06 1.77 7.10 -52.49 -0.37 1.40 16 22 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 23 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 24 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 28 N -0.28 -4.14 11.85 32.17 0.38 -3.76 16 29 C -0.11 -1.39 9.64 -39.11 -0.38 -1.77 16 30 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 31 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 32 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.13 0.75 6.28 -52.48 -0.33 0.42 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.14 1.34 7.88 -52.49 -0.41 0.93 16 36 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.12 0.89 8.14 -51.92 -0.42 0.47 16 38 H 0.37 4.17 9.05 45.56 0.41 4.58 16 39 H 0.04 0.57 8.05 -51.93 -0.42 0.15 16 40 H 0.07 0.79 7.88 -51.93 -0.41 0.38 16 41 H 0.01 0.22 8.13 -51.92 -0.42 -0.20 16 42 H 0.08 1.50 6.90 -51.93 -0.36 1.14 16 43 H 0.04 0.65 7.97 -51.93 -0.41 0.24 16 44 H -0.01 -0.23 8.11 -51.93 -0.42 -0.65 16 45 H 0.03 0.83 6.38 -51.93 -0.33 0.50 16 46 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.14 1.83 7.89 -52.49 -0.41 1.41 16 LS Contribution 398.62 15.07 6.01 6.01 Total: -1.00 -35.68 398.62 -7.01 -42.70 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -5.85 Total: 1.35 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -2.62 Total: -6.88 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 1.14 Total: -47.86 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -0.67 Total: -12.24 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.68 -7.01 -42.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414115407.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.442 kcal (2) G-P(sol) polarization free energy of solvation -35.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds