Wall clock time and date at job start Wed Apr 1 2020 06:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99664 * 2 1 4 4 C 1.38822 * 120.00172 * 0.02562 * 3 2 1 5 5 C 1.38203 * 120.18371 * 180.02562 * 4 3 2 6 6 C 1.38078 * 120.17353 * 359.97438 * 5 4 3 7 7 C 1.39299 * 119.99238 * 0.02562 * 6 5 4 8 8 C 1.48473 * 120.08641 * 179.97438 * 7 6 5 9 9 N 1.34046 * 126.67333 * 179.97438 * 8 7 6 10 10 N 1.28985 * 107.26861 * 180.02562 * 9 8 7 11 11 N 1.28725 * 108.94221 * 359.97438 * 10 9 8 12 12 C 1.46502 * 125.33848 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47529 * 90.02680 * 12 11 10 14 14 H 1.09006 * 109.46907 * 304.99521 * 13 12 11 15 15 O 1.42899 * 109.47321 * 64.99723 * 13 12 11 16 16 C 1.53002 * 109.47518 * 185.00199 * 13 12 11 17 17 N 1.46892 * 109.47225 * 178.46415 * 16 13 12 18 18 C 1.46897 * 111.00010 * 164.06584 * 17 16 13 19 19 C 1.46906 * 110.99720 * 288.01881 * 17 16 13 20 20 C 1.50698 * 109.46821 * 170.00457 * 19 17 16 21 21 H 1.07997 * 120.00745 * 359.97438 * 20 19 17 22 22 C 1.37881 * 119.99697 * 180.02562 * 20 19 17 23 23 N 1.31517 * 119.99967 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00106 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46842 * 89.99991 * 24 22 20 26 26 H 1.48498 * 109.47528 * 209.99910 * 24 22 20 27 27 H 1.48502 * 109.47368 * 330.00273 * 24 22 20 28 28 N 1.28872 * 109.32111 * 0.24438 * 11 10 9 29 29 C 1.38517 * 119.99291 * 180.30006 * 3 2 1 30 30 H 1.08998 * 109.47425 * 299.99742 * 1 2 3 31 31 H 1.08999 * 109.47480 * 60.00461 * 1 2 3 32 32 H 1.09005 * 109.47029 * 179.97438 * 1 2 3 33 33 H 1.08003 * 119.90379 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.90807 * 179.97438 * 5 4 3 35 35 H 1.07999 * 119.99733 * 180.02562 * 6 5 4 36 36 H 1.09004 * 109.47450 * 330.01978 * 12 11 10 37 37 H 1.09010 * 109.46865 * 210.02682 * 12 11 10 38 38 H 0.96695 * 114.00173 * 60.00468 * 15 13 12 39 39 H 1.08996 * 109.46997 * 58.45482 * 16 13 12 40 40 H 1.09002 * 109.46726 * 298.46176 * 16 13 12 41 41 H 1.09009 * 109.47307 * 65.42552 * 18 17 16 42 42 H 1.09003 * 109.47523 * 185.41800 * 18 17 16 43 43 H 1.08997 * 109.47702 * 305.42370 * 18 17 16 44 44 H 1.09002 * 109.46705 * 289.99771 * 19 17 16 45 45 H 1.08992 * 109.47324 * 50.00134 * 19 17 16 46 46 H 0.97002 * 119.99617 * 180.02562 * 23 22 20 47 47 H 1.07995 * 120.09044 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2898 2.3751 0.0005 5 6 1.9133 3.6086 0.0000 6 6 3.2917 3.6895 -0.0005 7 6 4.0575 2.5259 -0.0011 8 6 5.5398 2.6104 -0.0022 9 7 6.4003 1.5827 -0.0024 10 7 7.5905 2.0798 -0.0030 11 7 7.5068 3.3643 -0.0037 12 6 8.6443 4.2876 -0.0040 13 6 9.0402 4.6087 -1.4465 14 1 9.2334 3.6811 -1.9854 15 8 7.9772 5.3184 -2.0856 16 6 10.3034 5.4721 -1.4487 17 7 10.7044 5.7497 -2.8342 18 6 11.6632 6.8612 -2.8921 19 6 11.2535 4.5469 -3.4744 20 6 11.4239 4.7970 -4.9507 21 1 11.1512 5.7535 -5.3715 22 6 11.9270 3.8041 -5.7645 23 7 12.2586 2.6391 -5.2522 24 14 12.1376 4.1137 -7.5946 25 1 13.4921 4.6661 -7.8504 26 1 11.9760 2.8364 -8.3346 27 1 11.1122 5.0849 -8.0536 28 7 6.2656 3.7108 0.0015 29 6 3.4292 1.2833 -0.0063 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.2114 2.3168 0.0005 34 1 1.3207 4.5115 0.0000 35 1 3.7759 4.6548 -0.0005 36 1 9.4874 3.8258 0.5100 37 1 8.3655 5.2078 0.5097 38 1 7.7510 6.1560 -1.6587 39 1 11.1067 4.9419 -0.9371 40 1 10.1023 6.4114 -0.9335 41 1 12.5895 6.5681 -2.3978 42 1 11.8698 7.1090 -3.9333 43 1 11.2420 7.7311 -2.3883 44 1 12.2211 4.3095 -3.0321 45 1 10.5703 3.7111 -3.3239 46 1 12.6129 1.9407 -5.8248 47 1 4.0187 0.3785 -0.0108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414115407.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:07:11 Heat of formation + Delta-G solvation = 51.175107 kcal Electronic energy + Delta-G solvation = -29469.211594 eV Core-core repulsion = 25269.043590 eV Total energy + Delta-G solvation = -4200.168004 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.38363 -41.07142 -39.66148 -38.52992 -37.35166 -35.80090 -34.64404 -34.49300 -32.58424 -31.60283 -30.83477 -29.44527 -28.44762 -28.02889 -25.94694 -25.51321 -24.59423 -23.58118 -22.74868 -22.36528 -21.83336 -19.46559 -18.79540 -18.49769 -18.41305 -17.25472 -17.17240 -16.88035 -16.75807 -16.63429 -16.58276 -16.12857 -15.91111 -15.48284 -15.24352 -15.10766 -14.60826 -14.46343 -14.37216 -13.99461 -13.87243 -13.67797 -13.16019 -13.11605 -12.95157 -12.83812 -12.76735 -12.73063 -12.61065 -12.51256 -12.31746 -12.28918 -12.17630 -12.11723 -11.84950 -11.71552 -11.57229 -11.34052 -10.92727 -10.63351 -9.81015 -9.23237 -8.97507 -8.23327 -6.32512 -0.30921 0.16866 0.40631 0.86223 1.33794 1.36749 1.39205 1.50315 2.23040 2.37453 2.73012 2.77982 3.03617 3.09984 3.11878 3.43055 3.69071 3.73183 3.84426 3.98042 4.03707 4.19193 4.19535 4.22686 4.27651 4.39774 4.45569 4.48443 4.53445 4.61468 4.62931 4.63559 4.78167 4.78978 4.89834 4.91912 5.06081 5.11261 5.17832 5.23833 5.30601 5.39040 5.45950 5.62231 5.66853 6.04177 6.31078 6.41999 6.61992 6.83900 6.91916 7.20216 7.37002 8.87515 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013239 B = 0.002097 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.383873 B =13351.847607 C =14299.543729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.338 6.338 3 C 0.118 3.882 4 C -0.184 4.184 5 C -0.073 4.073 6 C -0.122 4.122 7 C 0.009 3.991 8 C 0.191 3.809 9 N -0.303 5.303 10 N -0.083 5.083 11 N -0.115 5.115 12 C 0.093 3.907 13 C 0.109 3.891 14 H 0.062 0.938 15 O -0.555 6.555 16 C 0.031 3.969 17 N -0.544 5.544 18 C 0.042 3.958 19 C 0.208 3.792 20 C -0.522 4.522 21 H 0.062 0.938 22 C -0.003 4.003 23 N -0.935 5.935 24 Si 0.967 3.033 25 H -0.268 1.268 26 H -0.285 1.285 27 H -0.267 1.267 28 N -0.280 5.280 29 C -0.136 4.136 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.165 0.835 34 H 0.169 0.831 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.166 0.834 38 H 0.389 0.611 39 H 0.045 0.955 40 H 0.120 0.880 41 H 0.012 0.988 42 H 0.051 0.949 43 H 0.089 0.911 44 H -0.035 1.035 45 H -0.001 1.001 46 H 0.263 0.737 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.490 5.592 17.321 28.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.252 6.252 3 C 0.072 3.928 4 C -0.203 4.203 5 C -0.090 4.090 6 C -0.142 4.142 7 C 0.006 3.994 8 C -0.088 4.088 9 N -0.174 5.174 10 N -0.075 5.075 11 N -0.028 5.028 12 C -0.026 4.026 13 C 0.047 3.953 14 H 0.080 0.920 15 O -0.362 6.362 16 C -0.098 4.098 17 N -0.268 5.268 18 C -0.106 4.106 19 C 0.082 3.918 20 C -0.561 4.561 21 H 0.080 0.920 22 C -0.200 4.200 23 N -0.576 5.576 24 Si 0.791 3.209 25 H -0.194 1.194 26 H -0.210 1.210 27 H -0.191 1.191 28 N -0.131 5.131 29 C -0.157 4.157 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.133 0.867 33 H 0.182 0.818 34 H 0.187 0.813 35 H 0.160 0.840 36 H 0.166 0.834 37 H 0.184 0.816 38 H 0.238 0.762 39 H 0.063 0.937 40 H 0.138 0.862 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.108 0.892 44 H -0.018 1.018 45 H 0.017 0.983 46 H 0.072 0.928 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.007 4.676 16.631 27.978 hybrid contribution 0.913 -0.291 -0.399 1.038 sum -21.095 4.386 16.231 26.975 Atomic orbital electron populations 1.23410 0.75934 1.05710 1.02727 1.86077 1.23899 1.26599 1.88674 1.18850 0.91290 0.85582 0.97029 1.21761 1.01805 0.91368 1.05335 1.21272 0.93214 0.98643 0.95906 1.21294 0.94622 0.97199 1.01112 1.17077 0.83882 0.94659 1.03763 1.23950 0.97045 0.84641 1.03179 1.75974 0.94894 1.27173 1.19321 1.78912 1.18166 0.93820 1.16638 1.50276 1.06153 1.05175 1.41180 1.23581 0.84488 0.94075 1.00494 1.22055 0.87842 0.95659 0.89742 0.92039 1.86731 1.53122 1.38735 1.57607 1.22695 0.95378 1.00998 0.90752 1.61853 1.41901 1.07783 1.15236 1.22220 0.93104 0.93549 1.01699 1.19388 0.90829 0.87805 0.93815 1.21495 1.41182 0.99585 0.93797 0.92011 1.25935 0.95355 0.94782 1.03958 1.70083 1.44961 1.05041 1.37467 0.85419 0.78876 0.77568 0.79009 1.19354 1.21027 1.19093 1.74787 0.90811 1.26221 1.21244 1.20315 0.92759 0.97344 1.05237 0.90928 0.91281 0.86657 0.81762 0.81306 0.84025 0.83358 0.81644 0.76186 0.93684 0.86227 0.96932 0.93019 0.89229 1.01788 0.98295 0.92804 0.85795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.26 16 2 O -0.34 -6.59 10.49 -92.42 -0.97 -7.56 16 3 C 0.12 2.44 6.68 22.48 0.15 2.59 16 4 C -0.18 -2.62 9.03 22.40 0.20 -2.42 16 5 C -0.07 -1.01 10.03 22.22 0.22 -0.79 16 6 C -0.12 -2.44 9.69 22.49 0.22 -2.23 16 7 C 0.01 0.25 5.87 -20.05 -0.12 0.13 16 8 C 0.19 6.07 7.94 137.38 1.09 7.16 16 9 N -0.30 -10.93 12.23 -52.17 -0.64 -11.56 16 10 N -0.08 -2.91 13.23 37.02 0.49 -2.42 16 11 N -0.11 -3.34 3.94 -187.54 -0.74 -4.08 16 12 C 0.09 1.88 6.23 86.38 0.54 2.42 16 13 C 0.11 3.20 3.23 30.59 0.10 3.30 16 14 H 0.06 2.51 6.55 -2.38 -0.02 2.50 16 15 O -0.56 -17.27 13.18 -148.98 -1.96 -19.23 16 16 C 0.03 0.86 4.63 86.31 0.40 1.26 16 17 N -0.54 -21.71 4.60 -927.06 -4.27 -25.98 16 18 C 0.04 1.45 9.32 127.69 1.19 2.64 16 19 C 0.21 10.99 4.57 85.56 0.39 11.38 16 20 C -0.52 -30.16 8.53 25.60 0.22 -29.94 16 21 H 0.06 3.50 7.10 -2.91 -0.02 3.48 16 22 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 23 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 24 Si 0.97 45.67 29.54 68.60 2.03 47.69 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 26 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 27 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 28 N -0.28 -8.19 11.85 -52.12 -0.62 -8.81 16 29 C -0.14 -3.53 9.64 22.58 0.22 -3.32 16 30 H 0.07 0.40 7.66 -2.39 -0.02 0.38 16 31 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 32 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.16 1.18 6.28 -2.91 -0.02 1.17 16 34 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.14 2.58 7.88 -2.91 -0.02 2.56 16 36 H 0.15 2.37 8.14 -2.38 -0.02 2.35 16 37 H 0.17 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.39 7.82 9.05 -74.06 -0.67 7.15 16 39 H 0.04 1.24 8.05 -2.39 -0.02 1.22 16 40 H 0.12 2.16 7.88 -2.39 -0.02 2.15 16 41 H 0.01 0.42 8.13 -2.38 -0.02 0.40 16 42 H 0.05 2.01 6.90 -2.39 -0.02 1.99 16 43 H 0.09 2.28 7.97 -2.39 -0.02 2.26 16 44 H -0.04 -2.02 8.11 -2.39 -0.02 -2.03 16 45 H 0.00 -0.06 6.38 -2.39 -0.02 -0.07 16 46 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 47 H 0.12 3.56 7.89 -2.91 -0.02 3.54 16 Total: -1.00 -83.93 398.62 0.34 -83.59 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.33 Total: 12.20 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 6.39 Total: -6.23 kcal Atomic # 7 Polarization: -104.98 SS G_CDS: -5.49 Total: -110.46 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -2.93 Total: -26.79 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -83.93 0.34 -83.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414115407.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.769 kcal (2) G-P(sol) polarization free energy of solvation -83.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds