Wall clock time and date at job start Wed Apr 1 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99996 * 2 1 4 4 C 1.46892 * 110.99979 * 123.95549 * 2 1 3 5 5 C 1.53003 * 109.47145 * 170.00100 * 4 2 1 6 6 C 1.52999 * 109.47110 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.47260 * 179.97438 * 6 5 4 8 8 C 1.46498 * 120.00149 * 262.89925 * 7 6 5 9 9 C 1.50701 * 109.47189 * 265.07177 * 8 7 6 10 10 H 1.08004 * 119.99820 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00117 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99806 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99984 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47189 * 89.99808 * 13 11 9 15 15 H 1.48500 * 109.47174 * 210.00076 * 13 11 9 16 16 H 1.48499 * 109.47048 * 329.99686 * 13 11 9 17 17 C 1.34782 * 119.99967 * 82.89343 * 7 6 5 18 18 O 1.21557 * 120.00210 * 183.19406 * 17 7 6 19 19 C 1.47853 * 119.99769 * 3.19705 * 17 7 6 20 20 C 1.39718 * 119.43309 * 173.16117 * 19 17 7 21 21 C 1.36999 * 119.58719 * 180.27899 * 20 19 17 22 22 C 1.39894 * 118.37312 * 359.45959 * 21 20 19 23 23 N 1.35417 * 133.68605 * 180.25404 * 22 21 20 24 24 C 1.30934 * 109.56687 * 180.02562 * 23 22 21 25 25 O 1.35183 * 124.99660 * 179.97438 * 24 23 22 26 26 N 1.36387 * 110.00853 * 0.02562 * 24 23 22 27 27 H 0.96995 * 126.32543 * 179.97438 * 26 24 23 28 28 C 1.38255 * 107.35635 * 359.97438 * 26 24 23 29 29 N 1.31770 * 133.71035 * 179.97438 * 28 26 24 30 30 H 1.09003 * 109.47188 * 296.04895 * 1 2 3 31 31 H 1.09008 * 109.47192 * 56.04451 * 1 2 3 32 32 H 1.08997 * 109.46990 * 176.04599 * 1 2 3 33 33 H 1.08997 * 109.47207 * 183.95610 * 3 2 1 34 34 H 1.09000 * 109.47114 * 303.95850 * 3 2 1 35 35 H 1.08998 * 109.47066 * 63.95417 * 3 2 1 36 36 H 1.08997 * 109.47450 * 50.00035 * 4 2 1 37 37 H 1.09003 * 109.47282 * 289.99696 * 4 2 1 38 38 H 1.08997 * 109.47000 * 59.99659 * 5 4 2 39 39 H 1.09003 * 109.46700 * 299.99952 * 5 4 2 40 40 H 1.09004 * 109.47125 * 59.99994 * 6 5 4 41 41 H 1.08997 * 109.47265 * 300.00042 * 6 5 4 42 42 H 1.09005 * 109.47128 * 25.07532 * 8 7 6 43 43 H 1.09007 * 109.47136 * 145.07246 * 8 7 6 44 44 H 0.97002 * 119.99775 * 180.02562 * 12 11 9 45 45 H 1.08000 * 120.21253 * 0.03188 * 20 19 17 46 46 H 1.08007 * 120.81188 * 179.72690 * 21 20 19 47 47 H 0.96699 * 114.00007 * 269.99852 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9553 0.9703 6 6 4.0528 -1.7526 2.1554 7 7 5.4976 -1.9344 1.9950 8 6 6.0204 -3.1776 1.4229 9 6 6.3861 -4.1273 2.5344 10 1 6.2430 -3.8342 3.5640 11 6 6.9024 -5.3707 2.2369 12 7 7.2211 -6.1995 3.2069 13 14 7.1493 -5.8778 0.4561 14 1 8.5098 -5.4811 0.0124 15 1 6.9989 -7.3502 0.3353 16 1 6.1353 -5.2052 -0.3952 17 6 6.3459 -0.9579 2.3737 18 8 7.5404 -1.0844 2.1874 19 6 5.8234 0.2672 3.0157 20 6 6.7190 1.2066 3.5331 21 6 6.2383 2.3402 4.1338 22 6 4.8527 2.5223 4.1974 23 7 4.0597 3.4981 4.7001 24 6 2.8032 3.1868 4.5035 25 8 1.7486 3.9427 4.8829 26 7 2.7147 1.9871 3.8607 27 1 1.8978 1.5341 3.5995 28 6 4.0045 1.5359 3.6502 29 7 4.5114 0.4579 3.0869 30 1 -0.3634 0.4513 0.9233 31 1 -0.3634 0.5740 -0.8525 32 1 -0.3633 -1.0252 -0.0709 33 1 3.0827 1.3432 -0.0709 34 1 1.5897 1.9163 -0.8524 35 1 1.7044 1.8723 0.9233 36 1 1.5090 -1.7406 1.1756 37 1 1.7975 -0.2248 2.0628 38 1 3.9909 0.0193 0.9322 39 1 3.7023 -1.4965 0.0450 40 1 3.5664 -2.7273 2.1938 41 1 3.8549 -1.2110 3.0804 42 1 5.2594 -3.6346 0.7901 43 1 6.9058 -2.9588 0.8259 44 1 7.5847 -7.0742 2.9976 45 1 7.7835 1.0384 3.4634 46 1 6.9126 3.0772 4.5442 47 1 1.4232 3.7459 5.7720 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419905031.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:28 Heat of formation + Delta-G solvation = 53.764719 kcal Electronic energy + Delta-G solvation = -31648.959937 eV Core-core repulsion = 27448.904227 eV Total energy + Delta-G solvation = -4200.055710 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.63907 -39.96529 -38.45155 -37.78263 -36.98154 -35.50082 -33.98799 -32.77203 -31.50088 -31.36549 -29.85293 -27.96743 -27.76713 -26.00108 -24.54976 -23.61844 -22.70470 -22.23673 -22.05339 -20.79176 -19.77236 -19.31885 -18.01464 -17.73248 -16.96893 -16.82989 -16.37117 -15.92199 -15.45525 -15.32254 -15.01516 -14.95233 -14.81672 -14.28393 -14.17686 -13.94029 -13.59845 -13.31830 -13.00946 -12.61451 -12.49950 -12.46998 -12.30716 -12.22376 -11.91880 -11.84476 -11.65154 -11.53210 -11.45572 -11.31937 -11.13498 -10.76415 -10.51818 -10.28939 -10.13806 -9.69472 -9.47176 -9.13644 -8.87854 -8.59675 -8.57661 -8.50866 -7.71253 -6.07523 -4.06490 0.26113 1.07634 1.74228 2.16765 3.12960 3.22213 3.31087 3.36921 3.39136 3.59707 3.82678 3.96349 4.05149 4.38146 4.41086 4.60308 4.79992 4.91609 4.96201 5.00372 5.12874 5.20079 5.25398 5.37293 5.40229 5.50907 5.52473 5.60982 5.64815 5.69250 5.76595 5.79799 5.89673 5.93273 6.15791 6.18849 6.32910 6.37996 6.65628 6.72747 6.88299 6.92873 6.94151 7.04450 7.26610 7.32573 7.54558 7.60288 8.18506 8.45774 8.82458 8.96493 9.52282 11.05770 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010617 B = 0.003815 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.541690 B = 7338.202733 C = 9160.288895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.028 3.972 4 C 0.067 3.933 5 C -0.120 4.120 6 C 0.109 3.891 7 N -0.565 5.565 8 C 0.215 3.785 9 C -0.528 4.528 10 H 0.075 0.925 11 C 0.074 3.926 12 N -0.897 5.897 13 Si 0.875 3.125 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.265 1.265 17 C 0.560 3.440 18 O -0.526 6.526 19 C 0.136 3.864 20 C -0.119 4.119 21 C -0.028 4.028 22 C 0.027 3.973 23 N -0.477 5.477 24 C 0.466 3.534 25 O -0.439 6.439 26 N -0.587 5.587 27 H 0.425 0.575 28 C 0.241 3.759 29 N -0.435 5.435 30 H 0.020 0.980 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.017 0.983 36 H 0.075 0.925 37 H 0.025 0.975 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.035 0.965 43 H 0.037 0.963 44 H 0.264 0.736 45 H 0.160 0.840 46 H 0.149 0.851 47 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.766 18.914 0.550 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.121 4.121 4 C -0.061 4.061 5 C -0.159 4.159 6 C -0.016 4.016 7 N -0.294 5.294 8 C 0.095 3.905 9 C -0.566 4.566 10 H 0.093 0.907 11 C -0.129 4.129 12 N -0.535 5.535 13 Si 0.701 3.299 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.189 1.189 17 C 0.345 3.655 18 O -0.402 6.402 19 C -0.012 4.012 20 C -0.142 4.142 21 C -0.055 4.055 22 C -0.095 4.095 23 N -0.209 5.209 24 C 0.161 3.839 25 O -0.241 6.241 26 N -0.214 5.214 27 H 0.265 0.735 28 C 0.005 3.995 29 N -0.153 5.153 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.035 0.965 36 H 0.093 0.907 37 H 0.043 0.957 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.121 0.879 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.178 0.822 46 H 0.167 0.833 47 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -14.194 18.863 -0.390 23.611 hybrid contribution -0.782 -0.437 0.287 0.941 sum -14.976 18.426 -0.103 23.745 Atomic orbital electron populations 1.22373 0.87615 1.02264 1.00043 1.61949 1.07423 1.13747 1.43857 1.22368 1.01359 0.88706 0.99635 1.22005 0.96294 0.97721 0.90128 1.21895 0.93493 1.01207 0.99315 1.21910 0.80307 0.99930 0.99423 1.47795 1.06020 1.16523 1.59039 1.19773 0.95054 0.80746 0.94950 1.21296 1.42832 0.98517 0.93979 0.90706 1.24833 0.94640 0.96216 0.97181 1.69895 1.43506 1.08388 1.31756 0.86873 0.79519 0.77868 0.85601 1.19840 1.21103 1.18939 1.17571 0.86101 0.81953 0.79904 1.90795 1.14594 1.79079 1.55685 1.21465 0.86750 0.96030 0.96941 1.21647 1.02511 0.92742 0.97346 1.20438 0.91239 0.97340 0.96525 1.19614 0.94930 0.92560 1.02355 1.70603 0.98295 1.27340 1.24685 1.20191 0.87251 0.81761 0.94742 1.84820 1.43841 1.56301 1.39127 1.43011 1.07355 1.19062 1.52012 0.73475 1.18767 0.84896 0.94239 1.01611 1.67223 1.14154 1.17495 1.16378 0.96112 0.91600 0.91243 0.91066 0.91756 0.96482 0.90687 0.95653 0.91675 0.91586 0.90987 0.87915 0.94720 0.94543 0.92563 0.82217 0.83309 0.72777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.57 60.07 0.57 0.79 16 2 N -0.55 -6.02 5.02 -251.26 -1.26 -7.28 16 3 C 0.03 0.29 9.32 60.06 0.56 0.85 16 4 C 0.07 0.76 4.96 -3.83 -0.02 0.74 16 5 C -0.12 -1.70 4.80 -26.73 -0.13 -1.83 16 6 C 0.11 1.79 4.96 -4.04 -0.02 1.77 16 7 N -0.57 -11.68 2.49 -176.17 -0.44 -12.11 16 8 C 0.22 5.19 4.18 -5.19 -0.02 5.17 16 9 C -0.53 -15.00 9.90 -34.44 -0.34 -15.35 16 10 H 0.07 2.34 8.06 -52.48 -0.42 1.92 16 11 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 12 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 13 Si 0.87 21.38 27.47 -169.99 -4.67 16.71 16 14 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 17 C 0.56 11.50 7.55 -12.32 -0.09 11.41 16 18 O -0.53 -12.49 15.95 5.32 0.08 -12.41 16 19 C 0.14 2.21 6.52 -82.97 -0.54 1.67 16 20 C -0.12 -1.65 9.55 -39.48 -0.38 -2.02 16 21 C -0.03 -0.33 10.16 -39.41 -0.40 -0.73 16 22 C 0.03 0.34 7.24 -84.57 -0.61 -0.27 16 23 N -0.48 -5.83 11.30 -12.11 -0.14 -5.97 16 24 C 0.47 4.41 9.39 -88.77 -0.83 3.58 16 25 O -0.44 -2.73 13.62 -17.25 -0.23 -2.96 16 26 N -0.59 -5.43 6.25 -13.33 -0.08 -5.52 16 27 H 0.42 2.96 8.73 -40.82 -0.36 2.61 16 28 C 0.24 3.02 8.46 -155.51 -1.32 1.70 16 29 N -0.44 -6.18 4.30 -8.77 -0.04 -6.22 16 30 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.52 8.12 -51.92 -0.42 0.09 16 32 H 0.07 0.58 8.12 -51.93 -0.42 0.15 16 33 H 0.07 0.84 6.47 -51.93 -0.34 0.50 16 34 H 0.06 0.60 8.12 -51.93 -0.42 0.17 16 35 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.07 0.84 8.06 -51.93 -0.42 0.42 16 37 H 0.03 0.26 7.89 -51.93 -0.41 -0.15 16 38 H 0.06 0.96 5.15 -51.93 -0.27 0.69 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.21 8.02 -51.93 -0.42 0.79 16 41 H 0.10 1.62 5.23 -52.61 -0.28 1.34 16 42 H 0.03 0.80 7.09 -51.93 -0.37 0.43 16 43 H 0.04 0.93 6.96 -51.92 -0.36 0.57 16 44 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.16 2.11 7.62 -52.49 -0.40 1.71 16 46 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 47 H 0.41 0.31 9.06 45.56 0.41 0.72 16 LS Contribution 386.62 15.07 5.83 5.83 Total: -1.00 -35.76 386.62 -9.58 -45.35 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.74 Total: 1.77 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: -3.67 Total: 9.51 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: -1.18 Total: -63.79 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.15 Total: -15.37 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.76 -9.58 -45.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419905031.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.110 kcal (2) G-P(sol) polarization free energy of solvation -35.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds