Wall clock time and date at job start Wed Apr 1 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99996 * 2 1 4 4 C 1.46892 * 110.99979 * 123.95549 * 2 1 3 5 5 C 1.53003 * 109.47145 * 170.00100 * 4 2 1 6 6 C 1.52999 * 109.47110 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.47260 * 179.97438 * 6 5 4 8 8 C 1.46498 * 120.00149 * 262.89925 * 7 6 5 9 9 C 1.50701 * 109.47189 * 265.07177 * 8 7 6 10 10 H 1.08004 * 119.99820 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00117 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99806 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99984 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47189 * 89.99808 * 13 11 9 15 15 H 1.48500 * 109.47174 * 210.00076 * 13 11 9 16 16 H 1.48499 * 109.47048 * 329.99686 * 13 11 9 17 17 C 1.34782 * 119.99967 * 82.89343 * 7 6 5 18 18 O 1.21557 * 120.00210 * 183.19406 * 17 7 6 19 19 C 1.47853 * 119.99769 * 3.19705 * 17 7 6 20 20 C 1.39718 * 119.43309 * 173.16117 * 19 17 7 21 21 C 1.36999 * 119.58719 * 180.27899 * 20 19 17 22 22 C 1.39894 * 118.37312 * 359.45959 * 21 20 19 23 23 N 1.35417 * 133.68605 * 180.25404 * 22 21 20 24 24 C 1.30934 * 109.56687 * 180.02562 * 23 22 21 25 25 O 1.35183 * 124.99660 * 179.97438 * 24 23 22 26 26 N 1.36387 * 110.00853 * 0.02562 * 24 23 22 27 27 H 0.96995 * 126.32543 * 179.97438 * 26 24 23 28 28 C 1.38255 * 107.35635 * 359.97438 * 26 24 23 29 29 N 1.31770 * 133.71035 * 179.97438 * 28 26 24 30 30 H 1.09003 * 109.47188 * 296.04895 * 1 2 3 31 31 H 1.09008 * 109.47192 * 56.04451 * 1 2 3 32 32 H 1.08997 * 109.46990 * 176.04599 * 1 2 3 33 33 H 1.08997 * 109.47207 * 183.95610 * 3 2 1 34 34 H 1.09000 * 109.47114 * 303.95850 * 3 2 1 35 35 H 1.08998 * 109.47066 * 63.95417 * 3 2 1 36 36 H 1.08997 * 109.47450 * 50.00035 * 4 2 1 37 37 H 1.09003 * 109.47282 * 289.99696 * 4 2 1 38 38 H 1.08997 * 109.47000 * 59.99659 * 5 4 2 39 39 H 1.09003 * 109.46700 * 299.99952 * 5 4 2 40 40 H 1.09004 * 109.47125 * 59.99994 * 6 5 4 41 41 H 1.08997 * 109.47265 * 300.00042 * 6 5 4 42 42 H 1.09005 * 109.47128 * 25.07532 * 8 7 6 43 43 H 1.09007 * 109.47136 * 145.07246 * 8 7 6 44 44 H 0.97002 * 119.99775 * 180.02562 * 12 11 9 45 45 H 1.08000 * 120.21253 * 0.03188 * 20 19 17 46 46 H 1.08007 * 120.81188 * 179.72690 * 21 20 19 47 47 H 0.96699 * 114.00007 * 269.99852 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9553 0.9703 6 6 4.0528 -1.7526 2.1554 7 7 5.4976 -1.9344 1.9950 8 6 6.0204 -3.1776 1.4229 9 6 6.3861 -4.1273 2.5344 10 1 6.2430 -3.8342 3.5640 11 6 6.9024 -5.3707 2.2369 12 7 7.2211 -6.1995 3.2069 13 14 7.1493 -5.8778 0.4561 14 1 8.5098 -5.4811 0.0124 15 1 6.9989 -7.3502 0.3353 16 1 6.1353 -5.2052 -0.3952 17 6 6.3459 -0.9579 2.3737 18 8 7.5404 -1.0844 2.1874 19 6 5.8234 0.2672 3.0157 20 6 6.7190 1.2066 3.5331 21 6 6.2383 2.3402 4.1338 22 6 4.8527 2.5223 4.1974 23 7 4.0597 3.4981 4.7001 24 6 2.8032 3.1868 4.5035 25 8 1.7486 3.9427 4.8829 26 7 2.7147 1.9871 3.8607 27 1 1.8978 1.5341 3.5995 28 6 4.0045 1.5359 3.6502 29 7 4.5114 0.4579 3.0869 30 1 -0.3634 0.4513 0.9233 31 1 -0.3634 0.5740 -0.8525 32 1 -0.3633 -1.0252 -0.0709 33 1 3.0827 1.3432 -0.0709 34 1 1.5897 1.9163 -0.8524 35 1 1.7044 1.8723 0.9233 36 1 1.5090 -1.7406 1.1756 37 1 1.7975 -0.2248 2.0628 38 1 3.9909 0.0193 0.9322 39 1 3.7023 -1.4965 0.0450 40 1 3.5664 -2.7273 2.1938 41 1 3.8549 -1.2110 3.0804 42 1 5.2594 -3.6346 0.7901 43 1 6.9058 -2.9588 0.8259 44 1 7.5847 -7.0742 2.9976 45 1 7.7835 1.0384 3.4634 46 1 6.9126 3.0772 4.5442 47 1 1.4232 3.7459 5.7720 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419905031.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:21 Heat of formation + Delta-G solvation = 24.136719 kcal Electronic energy + Delta-G solvation = -31650.244704 eV Core-core repulsion = 27448.904227 eV Total energy + Delta-G solvation = -4201.340477 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.55703 -41.27969 -39.47590 -38.72174 -37.85756 -37.00631 -35.08136 -34.70172 -32.78677 -32.45871 -31.12324 -29.63509 -28.51504 -27.14059 -25.84375 -24.73508 -23.93535 -23.66711 -22.92059 -21.76731 -20.92854 -20.35373 -19.13844 -19.00837 -18.56430 -18.21390 -17.40927 -17.10931 -16.55687 -16.45371 -16.26204 -15.99935 -15.91703 -15.67068 -15.39936 -15.11901 -14.92294 -14.53264 -14.24439 -14.14984 -13.68977 -13.45854 -13.39408 -13.26038 -13.22283 -12.97835 -12.87566 -12.64625 -12.53252 -12.46531 -12.39879 -12.31690 -11.98742 -11.84782 -11.72367 -11.46015 -11.13900 -10.80705 -10.16799 -10.05674 -9.62793 -9.36614 -9.29338 -8.31767 -6.36969 -0.75989 0.06412 0.91788 1.24096 1.35539 1.39160 1.47732 1.86592 2.10670 2.33241 2.43539 2.72794 2.97761 3.03545 3.08168 3.34087 3.68721 3.77785 3.92422 4.01547 4.18504 4.24431 4.39057 4.43987 4.48131 4.52410 4.53148 4.66254 4.68878 4.73879 4.81998 4.85588 4.90722 4.94037 4.98769 5.00255 5.03410 5.17211 5.30348 5.44229 5.51946 5.60559 5.68724 6.06818 6.12957 6.22892 6.33962 6.41109 6.57275 6.63368 6.65250 7.17156 7.31419 8.85158 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010617 B = 0.003815 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.541690 B = 7338.202733 C = 9160.288895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.562 5.562 3 C 0.031 3.969 4 C 0.074 3.926 5 C -0.105 4.105 6 C 0.110 3.890 7 N -0.575 5.575 8 C 0.225 3.775 9 C -0.534 4.534 10 H 0.028 0.972 11 C 0.015 3.985 12 N -0.944 5.944 13 Si 0.945 3.055 14 H -0.273 1.273 15 H -0.275 1.275 16 H -0.239 1.239 17 C 0.554 3.446 18 O -0.572 6.572 19 C 0.107 3.893 20 C -0.119 4.119 21 C -0.020 4.020 22 C 0.028 3.972 23 N -0.507 5.507 24 C 0.497 3.503 25 O -0.433 6.433 26 N -0.573 5.573 27 H 0.438 0.562 28 C 0.232 3.768 29 N -0.432 5.432 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.026 0.974 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.065 0.935 41 H 0.113 0.887 42 H 0.051 0.949 43 H 0.023 0.977 44 H 0.269 0.731 45 H 0.158 0.842 46 H 0.178 0.822 47 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.634 21.200 -0.045 27.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.287 5.287 3 C -0.117 4.117 4 C -0.054 4.054 5 C -0.144 4.144 6 C -0.013 4.013 7 N -0.303 5.303 8 C 0.103 3.897 9 C -0.573 4.573 10 H 0.047 0.953 11 C -0.183 4.183 12 N -0.584 5.584 13 Si 0.768 3.232 14 H -0.199 1.199 15 H -0.200 1.200 16 H -0.163 1.163 17 C 0.341 3.659 18 O -0.452 6.452 19 C -0.039 4.039 20 C -0.143 4.143 21 C -0.047 4.047 22 C -0.093 4.093 23 N -0.240 5.240 24 C 0.192 3.808 25 O -0.239 6.239 26 N -0.202 5.202 27 H 0.281 0.719 28 C -0.006 4.006 29 N -0.149 5.149 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.044 0.956 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.130 0.870 42 H 0.069 0.931 43 H 0.041 0.959 44 H 0.078 0.922 45 H 0.176 0.824 46 H 0.196 0.804 47 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges -17.154 21.167 -0.963 27.262 hybrid contribution -0.075 -0.947 0.656 1.154 sum -17.230 20.220 -0.307 26.567 Atomic orbital electron populations 1.22415 0.85873 1.02799 1.01123 1.61897 1.09049 1.14064 1.43654 1.22319 1.00158 0.88627 1.00587 1.21877 0.93986 0.98440 0.91126 1.21701 0.95599 0.99988 0.97127 1.22092 0.77930 1.00150 1.01094 1.47869 1.07848 1.15521 1.59103 1.19431 0.95078 0.81605 0.93558 1.21484 1.42929 0.99726 0.93137 0.95339 1.25792 0.94084 0.96084 1.02359 1.70044 1.44769 1.09078 1.34507 0.85754 0.79899 0.78002 0.79582 1.19869 1.20007 1.16256 1.18189 0.85583 0.83040 0.79051 1.90740 1.16469 1.80455 1.57496 1.20752 0.88101 0.95322 0.99755 1.21613 1.02138 0.92960 0.97548 1.20651 0.91671 0.96885 0.95536 1.19873 0.95401 0.92654 1.01396 1.70656 0.99285 1.27671 1.26357 1.20289 0.87429 0.80918 0.92199 1.84808 1.42405 1.55370 1.41320 1.42956 1.06733 1.18948 1.51600 0.71908 1.18804 0.86277 0.93812 1.01721 1.66931 1.13258 1.18352 1.16318 0.94790 0.90714 0.91035 0.93017 0.90685 0.95559 0.90327 0.94183 0.92227 0.93311 0.91637 0.87009 0.93072 0.95924 0.92237 0.82411 0.80436 0.69436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.57 127.69 1.22 1.59 16 2 N -0.56 -11.15 5.02 -948.86 -4.76 -15.91 16 3 C 0.03 0.58 9.32 127.69 1.19 1.77 16 4 C 0.07 1.55 4.96 86.31 0.43 1.98 16 5 C -0.11 -2.94 4.80 30.59 0.15 -2.79 16 6 C 0.11 3.68 4.96 86.38 0.43 4.11 16 7 N -0.58 -24.78 2.49 -829.54 -2.06 -26.84 16 8 C 0.23 11.22 4.18 85.63 0.36 11.58 16 9 C -0.53 -31.82 9.90 25.60 0.25 -31.56 16 10 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 11 C 0.01 0.89 5.47 84.66 0.46 1.35 16 12 N -0.94 -59.89 13.96 21.45 0.30 -59.59 16 13 Si 0.95 44.66 27.47 68.60 1.88 46.54 16 14 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 15 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 16 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 17 C 0.55 23.98 7.55 86.79 0.65 24.64 16 18 O -0.57 -28.94 15.95 -3.90 -0.06 -29.00 16 19 C 0.11 3.57 6.52 41.91 0.27 3.84 16 20 C -0.12 -3.34 9.55 22.34 0.21 -3.12 16 21 C -0.02 -0.46 10.16 22.38 0.23 -0.23 16 22 C 0.03 0.67 7.24 39.70 0.29 0.95 16 23 N -0.51 -10.88 11.30 -306.03 -3.46 -14.34 16 24 C 0.50 7.58 9.39 179.70 1.69 9.26 16 25 O -0.43 -3.41 13.62 -84.63 -1.15 -4.56 16 26 N -0.57 -8.77 6.25 -307.02 -1.92 -10.69 16 27 H 0.44 4.44 8.73 -92.71 -0.81 3.63 16 28 C 0.23 5.39 8.46 134.00 1.13 6.52 16 29 N -0.43 -12.07 4.30 -181.67 -0.78 -12.85 16 30 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.07 0.95 8.12 -2.38 -0.02 0.93 16 32 H 0.07 1.00 8.12 -2.39 -0.02 0.98 16 33 H 0.05 1.16 6.47 -2.39 -0.02 1.14 16 34 H 0.07 1.21 8.12 -2.39 -0.02 1.19 16 35 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.08 1.61 8.06 -2.39 -0.02 1.59 16 37 H 0.04 0.72 7.89 -2.39 -0.02 0.70 16 38 H 0.06 1.75 5.15 -2.39 -0.01 1.74 16 39 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 2.24 8.02 -2.38 -0.02 2.22 16 41 H 0.11 3.54 5.23 -3.73 -0.02 3.52 16 42 H 0.05 2.36 7.09 -2.38 -0.02 2.35 16 43 H 0.02 1.19 6.96 -2.38 -0.02 1.18 16 44 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 45 H 0.16 4.38 7.62 -2.91 -0.02 4.36 16 46 H 0.18 2.87 8.06 -2.91 -0.02 2.85 16 47 H 0.44 -1.50 9.06 -74.06 -0.67 -2.17 16 Total: -1.00 -81.91 386.62 -3.56 -85.47 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -0.51 Total: 11.88 kcal Atomic # 6 Polarization: 20.92 SS G_CDS: 8.97 Total: 29.89 kcal Atomic # 7 Polarization: -127.54 SS G_CDS: -12.68 Total: -140.22 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -1.21 Total: -33.56 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.88 Total: 46.54 kcal Total: -81.91 -3.56 -85.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419905031.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.605 kcal (2) G-P(sol) polarization free energy of solvation -81.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds