Wall clock time and date at job start Wed Apr 1 2020 05:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 120.00088 * 2 1 4 4 N 1.46896 * 109.47006 * 124.99774 * 3 2 1 5 5 C 1.46896 * 111.00209 * 288.36034 * 4 3 2 6 6 C 1.50707 * 109.47362 * 160.55877 * 5 4 3 7 7 H 1.08002 * 119.99349 * 4.45574 * 6 5 4 8 8 C 1.37875 * 119.99814 * 184.45321 * 6 5 4 9 9 N 1.31517 * 119.99404 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00431 * 0.02562 * 8 6 5 11 11 H 1.48494 * 109.47423 * 89.99543 * 10 8 6 12 12 H 1.48501 * 109.46945 * 210.00164 * 10 8 6 13 13 H 1.48504 * 109.46958 * 329.99564 * 10 8 6 14 14 C 1.46904 * 111.00000 * 164.40560 * 4 3 2 15 15 C 1.52993 * 109.46985 * 293.95508 * 14 4 3 16 16 N 1.46505 * 109.47252 * 179.97438 * 15 14 4 17 17 C 1.34733 * 126.50538 * 265.02778 * 16 15 14 18 18 N 1.30862 * 109.71091 * 179.97438 * 17 16 15 19 19 C 1.33546 * 109.80883 * 0.02562 * 18 17 16 20 20 C 1.38048 * 126.50257 * 84.71073 * 16 15 14 21 21 C 1.41150 * 134.58966 * 0.75799 * 20 16 15 22 22 O 1.21796 * 120.39099 * 359.26557 * 21 20 16 23 23 N 1.34937 * 119.22765 * 179.54579 * 21 20 16 24 24 C 1.46494 * 119.50597 * 179.75988 * 23 21 20 25 25 C 1.34420 * 120.98673 * 359.74510 * 23 21 20 26 26 O 1.21603 * 119.16470 * 179.97438 * 25 23 21 27 27 N 1.34633 * 121.66655 * 359.97438 * 25 23 21 28 28 C 1.46503 * 119.94965 * 180.02562 * 27 25 23 29 29 H 1.08010 * 120.00123 * 0.02562 * 1 2 3 30 30 H 1.08005 * 120.00139 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.99914 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47039 * 5.00055 * 3 2 1 33 33 H 1.08996 * 109.47355 * 245.00211 * 3 2 1 34 34 H 1.09006 * 109.47120 * 280.55931 * 5 4 3 35 35 H 1.08999 * 109.47462 * 40.55622 * 5 4 3 36 36 H 0.97007 * 119.99659 * 180.02562 * 9 8 6 37 37 H 1.08994 * 109.47210 * 173.95126 * 14 4 3 38 38 H 1.09006 * 109.46590 * 53.95519 * 14 4 3 39 39 H 1.09004 * 109.47121 * 60.00224 * 15 14 4 40 40 H 1.08993 * 109.47546 * 299.99789 * 15 14 4 41 41 H 1.08005 * 125.14712 * 359.97438 * 17 16 15 42 42 H 1.09000 * 109.47475 * 179.97438 * 24 23 21 43 43 H 1.08995 * 109.47488 * 299.97955 * 24 23 21 44 44 H 1.08999 * 109.47150 * 59.98157 * 24 23 21 45 45 H 1.08998 * 109.47345 * 269.98043 * 28 27 25 46 46 H 1.09001 * 109.46890 * 29.98182 * 28 27 25 47 47 H 1.08997 * 109.47076 * 149.98030 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3320 1.1345 5 6 2.2751 1.4807 2.4056 6 6 3.1606 1.0353 3.5408 7 1 4.1828 0.7459 3.3466 8 6 2.6658 0.9975 4.8271 9 7 3.4388 0.6093 5.8178 10 14 0.8975 1.4976 5.1628 11 1 0.0172 0.3067 5.0544 12 1 0.7951 2.0660 6.5309 13 1 0.4747 2.5178 4.1700 14 6 3.9961 2.3954 0.9690 15 6 4.8902 2.0726 -0.2298 16 7 5.8870 3.1334 -0.3953 17 6 5.7914 4.2033 -1.2087 18 7 6.8673 4.9398 -1.0974 19 6 7.7045 4.3878 -0.2154 20 6 7.0998 3.2297 0.2571 21 6 7.7789 2.4383 1.2084 22 8 7.2716 1.4163 1.6344 23 7 8.9941 2.8303 1.6446 24 6 9.7020 2.0164 2.6358 25 6 9.5650 3.9563 1.1830 26 8 10.6612 4.2786 1.5992 27 7 8.9539 4.7363 0.2715 28 6 9.6110 5.9554 -0.2061 29 1 -0.5401 0.9354 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4027 -0.9313 34 1 2.0006 2.5261 2.5475 35 1 1.3738 0.8680 2.3859 36 1 3.0905 0.5823 6.7228 37 1 4.6063 2.4637 1.8695 38 1 3.4906 3.3462 0.7997 39 1 4.2799 2.0043 -1.1303 40 1 5.3957 1.1219 -0.0605 41 1 4.9536 4.4202 -1.8548 42 1 10.6602 2.4803 2.8695 43 1 9.1019 1.9451 3.5429 44 1 9.8707 1.0179 2.2324 45 1 9.3296 6.7936 0.4313 46 1 10.6924 5.8217 -0.1742 47 1 9.3001 6.1581 -1.2310 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428855456.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:07 Heat of formation + Delta-G solvation = 67.623513 kcal Electronic energy + Delta-G solvation = -31350.376813 eV Core-core repulsion = 27150.922065 eV Total energy + Delta-G solvation = -4199.454748 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -43.11856 -41.17137 -39.02547 -37.81830 -36.47303 -35.27406 -34.28336 -33.19105 -32.23885 -30.86550 -29.15094 -27.89628 -27.59065 -26.78666 -25.03630 -23.90015 -23.34512 -22.54131 -21.18604 -20.49507 -19.53466 -19.34997 -18.42809 -17.37719 -17.22393 -16.87423 -16.25209 -15.75033 -15.62128 -15.30371 -15.27346 -14.94257 -14.75512 -14.49055 -14.36936 -13.95456 -13.84899 -13.32831 -13.29698 -13.22348 -12.88940 -12.58036 -12.52899 -12.39119 -12.35008 -11.80423 -11.44704 -11.30178 -11.05350 -10.90187 -10.74197 -10.61690 -10.54643 -10.47500 -10.13318 -9.98035 -9.87790 -9.64317 -9.33414 -9.07869 -8.57449 -8.23153 -7.63684 -6.05033 -4.02686 0.86820 1.60438 1.92031 2.37043 2.50953 2.55940 2.81931 3.25504 3.33125 3.33515 3.41904 3.88352 4.31090 4.37663 4.39974 4.61235 4.69287 4.96937 5.04716 5.18738 5.23153 5.25507 5.25785 5.32521 5.40541 5.40934 5.42048 5.47153 5.50776 5.56113 5.67480 5.73233 5.82950 5.91084 6.03006 6.16204 6.29388 6.36478 6.72267 6.75363 6.76264 6.87931 6.97869 7.12089 7.39801 7.46976 7.52850 7.70340 7.84485 7.89107 8.61249 9.07695 9.55561 11.08083 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011276 B = 0.003456 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.632749 B = 8100.641922 C = 9615.549342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 C 0.070 3.930 4 N -0.517 5.517 5 C 0.167 3.833 6 C -0.509 4.509 7 H 0.084 0.916 8 C 0.070 3.930 9 N -0.896 5.896 10 Si 0.870 3.130 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.270 1.270 14 C 0.054 3.946 15 C 0.101 3.899 16 N -0.399 5.399 17 C 0.257 3.743 18 N -0.501 5.501 19 C 0.303 3.697 20 C -0.137 4.137 21 C 0.583 3.417 22 O -0.481 6.481 23 N -0.553 5.553 24 C 0.083 3.917 25 C 0.710 3.290 26 O -0.545 6.545 27 N -0.512 5.512 28 C 0.093 3.907 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.032 0.968 33 H 0.071 0.929 34 H -0.012 1.012 35 H 0.031 0.969 36 H 0.263 0.737 37 H 0.098 0.902 38 H 0.028 0.972 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.226 0.774 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.494 7.510 -16.896 19.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.143 4.143 3 C -0.058 4.058 4 N -0.241 5.241 5 C 0.041 3.959 6 C -0.547 4.547 7 H 0.102 0.898 8 C -0.131 4.131 9 N -0.535 5.535 10 Si 0.698 3.302 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.195 1.195 14 C -0.075 4.075 15 C -0.020 4.020 16 N -0.079 5.079 17 C -0.026 4.026 18 N -0.225 5.225 19 C 0.072 3.928 20 C -0.255 4.255 21 C 0.376 3.624 22 O -0.353 6.353 23 N -0.298 5.298 24 C -0.057 4.057 25 C 0.412 3.588 26 O -0.418 6.418 27 N -0.240 5.240 28 C -0.048 4.048 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.132 0.868 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.005 0.995 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.116 0.884 38 H 0.046 0.954 39 H 0.116 0.884 40 H 0.133 0.867 41 H 0.242 0.758 42 H 0.120 0.880 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.088 0.912 46 H 0.109 0.891 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.165 7.202 -16.545 19.415 hybrid contribution -1.817 0.364 0.720 1.988 sum 5.349 7.566 -15.825 18.338 Atomic orbital electron populations 1.23750 0.96017 1.01371 1.03236 1.22873 0.95389 0.98780 0.97272 1.21368 0.94740 0.94771 0.94939 1.61875 1.14735 1.44777 1.02694 1.20196 0.94541 0.94719 0.86441 1.21038 1.00095 1.44117 0.89474 0.89799 1.24875 0.97110 0.94975 0.96172 1.69903 1.35922 1.47738 0.99960 0.86942 0.86222 0.79317 0.77740 1.20063 1.21173 1.19491 1.22232 0.94639 0.92457 0.98168 1.22377 0.89217 0.89551 1.00838 1.44945 1.13197 1.20436 1.29306 1.25189 0.98108 0.83439 0.95870 1.69608 1.02356 1.30118 1.20439 1.18054 0.87479 0.91719 0.95576 1.18849 0.93148 1.03316 1.10202 1.15517 0.80311 0.85389 0.81219 1.91041 1.64405 1.23850 1.55990 1.45810 1.18881 1.23382 1.41685 1.21979 0.98260 0.94743 0.90757 1.15444 0.84024 0.79875 0.79412 1.90988 1.18722 1.72258 1.59875 1.43752 1.14738 1.25521 1.40013 1.21900 0.98900 0.83309 1.00733 0.89177 0.88633 0.86795 0.95025 0.91042 0.99455 0.95095 0.92694 0.88364 0.95381 0.88352 0.86718 0.75769 0.87982 0.89674 0.90164 0.91169 0.89148 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.79 14.32 29.02 0.42 -2.38 16 2 C -0.12 -1.84 8.74 -36.02 -0.31 -2.16 16 3 C 0.07 1.02 5.28 -4.98 -0.03 1.00 16 4 N -0.52 -9.82 4.37 -237.52 -1.04 -10.86 16 5 C 0.17 3.90 3.65 -4.97 -0.02 3.88 16 6 C -0.51 -14.40 9.16 -34.44 -0.32 -14.72 16 7 H 0.08 2.65 7.90 -52.49 -0.41 2.24 16 8 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 9 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 10 Si 0.87 21.45 27.38 -169.99 -4.65 16.79 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.39 6.67 56.52 0.38 -6.01 16 14 C 0.05 0.92 5.11 -3.83 -0.02 0.90 16 15 C 0.10 1.32 5.83 -4.04 -0.02 1.29 16 16 N -0.40 -5.07 2.78 -115.75 -0.32 -5.39 16 17 C 0.26 2.57 12.49 -90.35 -1.13 1.44 16 18 N -0.50 -6.04 11.16 -13.38 -0.15 -6.19 16 19 C 0.30 4.12 7.64 -154.55 -1.18 2.94 16 20 C -0.14 -2.06 6.90 -83.71 -0.58 -2.64 16 21 C 0.58 9.77 7.44 -15.08 -0.11 9.66 16 22 O -0.48 -9.57 16.14 5.10 0.08 -9.49 16 23 N -0.55 -8.24 2.96 -131.63 -0.39 -8.63 16 24 C 0.08 1.05 9.99 59.84 0.60 1.65 16 25 C 0.71 10.23 8.12 -87.37 -0.71 9.52 16 26 O -0.54 -8.35 15.01 5.27 0.08 -8.27 16 27 N -0.51 -6.62 3.06 -128.31 -0.39 -7.01 16 28 C 0.09 0.87 10.39 59.85 0.62 1.49 16 29 H 0.09 1.16 7.84 -52.48 -0.41 0.75 16 30 H 0.10 1.16 8.06 -52.48 -0.42 0.74 16 31 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 32 H 0.03 0.46 7.71 -51.93 -0.40 0.06 16 33 H 0.07 0.82 5.94 -51.93 -0.31 0.51 16 34 H -0.01 -0.29 7.37 -51.93 -0.38 -0.67 16 35 H 0.03 0.73 6.29 -51.93 -0.33 0.41 16 36 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.10 2.11 7.31 -51.93 -0.38 1.73 16 38 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 39 H 0.10 0.91 6.28 -51.93 -0.33 0.58 16 40 H 0.11 1.74 7.50 -51.93 -0.39 1.35 16 41 H 0.23 1.13 8.06 -52.48 -0.42 0.71 16 42 H 0.10 1.15 6.80 -51.93 -0.35 0.80 16 43 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.79 7.38 -51.93 -0.38 0.40 16 47 H 0.09 0.72 8.01 -51.93 -0.42 0.30 16 LS Contribution 389.59 15.07 5.87 5.87 Total: -1.00 -35.64 389.59 -9.64 -45.27 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.61 Total: 0.96 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: -2.89 Total: 13.83 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: -1.52 Total: -64.97 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.16 Total: -17.76 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.65 Total: 16.79 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.64 -9.64 -45.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428855456.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.898 kcal (2) G-P(sol) polarization free energy of solvation -35.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds