Wall clock time and date at job start Wed Apr 1 2020 05:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 120.00088 * 2 1 4 4 N 1.46896 * 109.47006 * 124.99774 * 3 2 1 5 5 C 1.46896 * 111.00209 * 288.36034 * 4 3 2 6 6 C 1.50707 * 109.47362 * 160.55877 * 5 4 3 7 7 H 1.08002 * 119.99349 * 4.45574 * 6 5 4 8 8 C 1.37875 * 119.99814 * 184.45321 * 6 5 4 9 9 N 1.31517 * 119.99404 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00431 * 0.02562 * 8 6 5 11 11 H 1.48494 * 109.47423 * 89.99543 * 10 8 6 12 12 H 1.48501 * 109.46945 * 210.00164 * 10 8 6 13 13 H 1.48504 * 109.46958 * 329.99564 * 10 8 6 14 14 C 1.46904 * 111.00000 * 164.40560 * 4 3 2 15 15 C 1.52993 * 109.46985 * 293.95508 * 14 4 3 16 16 N 1.46505 * 109.47252 * 179.97438 * 15 14 4 17 17 C 1.34733 * 126.50538 * 265.02778 * 16 15 14 18 18 N 1.30862 * 109.71091 * 179.97438 * 17 16 15 19 19 C 1.33546 * 109.80883 * 0.02562 * 18 17 16 20 20 C 1.38048 * 126.50257 * 84.71073 * 16 15 14 21 21 C 1.41150 * 134.58966 * 0.75799 * 20 16 15 22 22 O 1.21796 * 120.39099 * 359.26557 * 21 20 16 23 23 N 1.34937 * 119.22765 * 179.54579 * 21 20 16 24 24 C 1.46494 * 119.50597 * 179.75988 * 23 21 20 25 25 C 1.34420 * 120.98673 * 359.74510 * 23 21 20 26 26 O 1.21603 * 119.16470 * 179.97438 * 25 23 21 27 27 N 1.34633 * 121.66655 * 359.97438 * 25 23 21 28 28 C 1.46503 * 119.94965 * 180.02562 * 27 25 23 29 29 H 1.08010 * 120.00123 * 0.02562 * 1 2 3 30 30 H 1.08005 * 120.00139 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.99914 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47039 * 5.00055 * 3 2 1 33 33 H 1.08996 * 109.47355 * 245.00211 * 3 2 1 34 34 H 1.09006 * 109.47120 * 280.55931 * 5 4 3 35 35 H 1.08999 * 109.47462 * 40.55622 * 5 4 3 36 36 H 0.97007 * 119.99659 * 180.02562 * 9 8 6 37 37 H 1.08994 * 109.47210 * 173.95126 * 14 4 3 38 38 H 1.09006 * 109.46590 * 53.95519 * 14 4 3 39 39 H 1.09004 * 109.47121 * 60.00224 * 15 14 4 40 40 H 1.08993 * 109.47546 * 299.99789 * 15 14 4 41 41 H 1.08005 * 125.14712 * 359.97438 * 17 16 15 42 42 H 1.09000 * 109.47475 * 179.97438 * 24 23 21 43 43 H 1.08995 * 109.47488 * 299.97955 * 24 23 21 44 44 H 1.08999 * 109.47150 * 59.98157 * 24 23 21 45 45 H 1.08998 * 109.47345 * 269.98043 * 28 27 25 46 46 H 1.09001 * 109.46890 * 29.98182 * 28 27 25 47 47 H 1.08997 * 109.47076 * 149.98030 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3320 1.1345 5 6 2.2751 1.4807 2.4056 6 6 3.1606 1.0353 3.5408 7 1 4.1828 0.7459 3.3466 8 6 2.6658 0.9975 4.8271 9 7 3.4388 0.6093 5.8178 10 14 0.8975 1.4976 5.1628 11 1 0.0172 0.3067 5.0544 12 1 0.7951 2.0660 6.5309 13 1 0.4747 2.5178 4.1700 14 6 3.9961 2.3954 0.9690 15 6 4.8902 2.0726 -0.2298 16 7 5.8870 3.1334 -0.3953 17 6 5.7914 4.2033 -1.2087 18 7 6.8673 4.9398 -1.0974 19 6 7.7045 4.3878 -0.2154 20 6 7.0998 3.2297 0.2571 21 6 7.7789 2.4383 1.2084 22 8 7.2716 1.4163 1.6344 23 7 8.9941 2.8303 1.6446 24 6 9.7020 2.0164 2.6358 25 6 9.5650 3.9563 1.1830 26 8 10.6612 4.2786 1.5992 27 7 8.9539 4.7363 0.2715 28 6 9.6110 5.9554 -0.2061 29 1 -0.5401 0.9354 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4027 -0.9313 34 1 2.0006 2.5261 2.5475 35 1 1.3738 0.8680 2.3859 36 1 3.0905 0.5823 6.7228 37 1 4.6063 2.4637 1.8695 38 1 3.4906 3.3462 0.7997 39 1 4.2799 2.0043 -1.1303 40 1 5.3957 1.1219 -0.0605 41 1 4.9536 4.4202 -1.8548 42 1 10.6602 2.4803 2.8695 43 1 9.1019 1.9451 3.5429 44 1 9.8707 1.0179 2.2324 45 1 9.3296 6.7936 0.4313 46 1 10.6924 5.8217 -0.1742 47 1 9.3001 6.1581 -1.2310 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428855456.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:03 Heat of formation + Delta-G solvation = 43.744894 kcal Electronic energy + Delta-G solvation = -31351.412268 eV Core-core repulsion = 27150.922065 eV Total energy + Delta-G solvation = -4200.490202 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -44.16963 -42.26203 -40.26953 -39.18868 -37.57132 -36.49939 -35.36507 -34.94536 -33.81161 -31.94789 -30.68174 -29.04429 -28.92049 -27.77802 -26.35049 -25.00425 -24.66427 -23.93273 -22.28080 -21.95739 -20.66500 -20.44972 -19.52503 -18.99450 -18.50886 -18.35101 -17.38524 -16.88724 -16.82095 -16.58162 -16.44727 -16.31336 -16.04278 -15.75540 -15.48416 -15.27793 -15.13384 -14.72513 -14.50789 -14.38506 -14.23525 -13.98698 -13.89278 -13.45133 -13.33461 -13.24891 -12.80013 -12.66183 -12.46497 -12.39759 -12.15370 -11.96453 -11.87948 -11.71034 -11.69671 -11.48369 -11.29457 -11.09187 -10.79951 -10.68153 -10.17378 -9.30266 -9.10368 -8.28741 -6.32301 -0.21781 0.56211 0.73938 1.30361 1.32252 1.35991 1.42880 1.50292 1.57143 1.70568 2.25990 2.31583 2.86546 3.03622 3.21896 3.34671 3.62571 3.68530 3.84972 4.04537 4.11677 4.20991 4.27136 4.30194 4.31459 4.32613 4.44114 4.47869 4.53056 4.59660 4.65342 4.67563 4.78311 4.81712 4.85659 4.94266 4.96573 5.04691 5.14549 5.28875 5.53001 5.77103 5.82720 5.83706 6.00223 6.03801 6.27365 6.29999 6.40560 6.61601 6.73990 6.76263 7.30461 8.88891 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011276 B = 0.003456 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.632749 B = 8100.641922 C = 9615.549342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.151 4.151 3 C 0.072 3.928 4 N -0.537 5.537 5 C 0.181 3.819 6 C -0.513 4.513 7 H 0.027 0.973 8 C 0.004 3.996 9 N -0.951 5.951 10 Si 0.947 3.053 11 H -0.262 1.262 12 H -0.284 1.284 13 H -0.247 1.247 14 C 0.062 3.938 15 C 0.119 3.881 16 N -0.408 5.408 17 C 0.292 3.708 18 N -0.509 5.509 19 C 0.315 3.685 20 C -0.180 4.180 21 C 0.577 3.423 22 O -0.533 6.533 23 N -0.557 5.557 24 C 0.082 3.918 25 C 0.707 3.293 26 O -0.556 6.556 27 N -0.510 5.510 28 C 0.088 3.912 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.043 0.957 33 H 0.111 0.889 34 H -0.013 1.013 35 H 0.036 0.964 36 H 0.265 0.735 37 H 0.036 0.964 38 H 0.049 0.951 39 H 0.152 0.848 40 H 0.084 0.916 41 H 0.285 0.715 42 H 0.117 0.883 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.773 9.806 -20.341 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.169 4.169 3 C -0.055 4.055 4 N -0.262 5.262 5 C 0.054 3.946 6 C -0.551 4.551 7 H 0.045 0.955 8 C -0.192 4.192 9 N -0.592 5.592 10 Si 0.770 3.230 11 H -0.187 1.187 12 H -0.210 1.210 13 H -0.171 1.171 14 C -0.067 4.067 15 C -0.002 4.002 16 N -0.089 5.089 17 C 0.010 3.990 18 N -0.233 5.233 19 C 0.083 3.917 20 C -0.296 4.296 21 C 0.372 3.628 22 O -0.410 6.410 23 N -0.301 5.301 24 C -0.059 4.059 25 C 0.409 3.591 26 O -0.431 6.431 27 N -0.237 5.237 28 C -0.051 4.051 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.061 0.939 33 H 0.129 0.871 34 H 0.005 0.995 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.170 0.830 40 H 0.102 0.898 41 H 0.300 0.700 42 H 0.135 0.865 43 H 0.090 0.910 44 H 0.106 0.894 45 H 0.098 0.902 46 H 0.114 0.886 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.485 9.539 -20.038 22.641 hybrid contribution -0.880 -0.308 1.709 1.946 sum 3.605 9.231 -18.329 20.836 Atomic orbital electron populations 1.23972 0.95621 1.02538 1.00961 1.22916 0.96040 0.98608 0.99368 1.21498 0.94569 0.95051 0.94356 1.61646 1.15868 1.46091 1.02572 1.19849 0.93664 0.94068 0.87041 1.21288 0.98530 1.43482 0.91843 0.95500 1.25904 1.02601 0.94987 0.95743 1.70097 1.38675 1.49841 1.00600 0.85720 0.79532 0.79774 0.77948 1.18717 1.20989 1.17085 1.22051 0.94127 0.93010 0.97509 1.22148 0.88677 0.88415 1.00993 1.44978 1.12494 1.21420 1.30031 1.26489 0.98158 0.80766 0.93567 1.69736 1.02791 1.30449 1.20303 1.18219 0.87452 0.90963 0.95082 1.18862 0.94983 1.04257 1.11527 1.15936 0.80571 0.85051 0.81236 1.91011 1.65667 1.26146 1.58188 1.45940 1.18661 1.23778 1.41687 1.22057 0.98394 0.95323 0.90089 1.15517 0.84021 0.79784 0.79758 1.90971 1.19130 1.72519 1.60493 1.43974 1.14677 1.25938 1.39142 1.22174 0.99100 0.82027 1.01840 0.87962 0.87541 0.87828 0.93851 0.87131 0.99506 0.94631 0.92609 0.94488 0.93261 0.83021 0.89761 0.70012 0.86460 0.91000 0.89372 0.90174 0.88587 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.59 14.32 67.78 0.97 -3.62 16 2 C -0.15 -4.09 8.74 25.65 0.22 -3.86 16 3 C 0.07 1.87 5.28 85.56 0.45 2.33 16 4 N -0.54 -20.16 4.37 -905.37 -3.96 -24.12 16 5 C 0.18 8.43 3.65 85.56 0.31 8.74 16 6 C -0.51 -30.55 9.16 25.60 0.23 -30.32 16 7 H 0.03 1.85 7.90 -2.91 -0.02 1.83 16 8 C 0.00 0.26 5.47 84.65 0.46 0.72 16 9 N -0.95 -61.79 13.96 21.45 0.30 -61.49 16 10 Si 0.95 44.53 27.38 68.60 1.88 46.41 16 11 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 H -0.25 -10.63 6.67 99.48 0.66 -9.97 16 14 C 0.06 2.10 5.11 86.30 0.44 2.54 16 15 C 0.12 2.92 5.83 86.38 0.50 3.42 16 16 N -0.41 -9.68 2.78 -520.13 -1.44 -11.13 16 17 C 0.29 4.56 12.49 180.26 2.25 6.81 16 18 N -0.51 -10.58 11.16 -196.26 -2.19 -12.77 16 19 C 0.31 8.21 7.64 132.82 1.01 9.22 16 20 C -0.18 -5.48 6.90 39.04 0.27 -5.21 16 21 C 0.58 20.90 7.44 84.93 0.63 21.53 16 22 O -0.53 -23.68 16.14 -4.65 -0.08 -23.76 16 23 N -0.56 -17.78 2.96 -806.92 -2.39 -20.17 16 24 C 0.08 2.27 9.99 127.77 1.28 3.55 16 25 C 0.71 20.83 8.12 179.21 1.45 22.28 16 26 O -0.56 -17.21 15.01 -4.04 -0.06 -17.27 16 27 N -0.51 -12.86 3.06 -678.19 -2.07 -14.93 16 28 C 0.09 1.50 10.39 127.77 1.33 2.82 16 29 H 0.10 2.18 7.84 -2.91 -0.02 2.16 16 30 H 0.11 2.26 8.06 -2.91 -0.02 2.24 16 31 H 0.10 2.98 8.06 -2.91 -0.02 2.96 16 32 H 0.04 1.06 7.71 -2.39 -0.02 1.04 16 33 H 0.11 1.96 5.94 -2.39 -0.01 1.95 16 34 H -0.01 -0.59 7.37 -2.38 -0.02 -0.61 16 35 H 0.04 1.63 6.29 -2.39 -0.02 1.61 16 36 H 0.27 16.02 8.31 -92.70 -0.77 15.25 16 37 H 0.04 1.70 7.31 -2.39 -0.02 1.69 16 38 H 0.05 1.43 8.12 -2.38 -0.02 1.41 16 39 H 0.15 2.05 6.28 -2.39 -0.01 2.04 16 40 H 0.08 2.65 7.50 -2.39 -0.02 2.63 16 41 H 0.28 0.71 8.06 -2.91 -0.02 0.69 16 42 H 0.12 2.83 6.80 -2.39 -0.02 2.81 16 43 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.10 1.54 7.38 -2.39 -0.02 1.52 16 47 H 0.11 1.44 8.01 -2.39 -0.02 1.42 16 Total: -1.00 -86.29 389.59 2.76 -83.53 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.94 Total: 14.73 kcal Atomic # 6 Polarization: 29.13 SS G_CDS: 11.83 Total: 40.96 kcal Atomic # 7 Polarization: -132.85 SS G_CDS: -11.76 Total: -144.61 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -0.14 Total: -41.03 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Total: -86.29 2.76 -83.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428855456.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.279 kcal (2) G-P(sol) polarization free energy of solvation -86.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds