Wall clock time and date at job start Wed Apr 1 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47261 * 74.94997 * 3 2 1 5 5 C 1.46904 * 110.99528 * 293.95067 * 4 3 2 6 6 C 1.46898 * 110.99853 * 169.99626 * 4 3 2 7 7 C 1.53007 * 109.46643 * 189.99695 * 6 4 3 8 8 C 1.52999 * 109.46869 * 179.97438 * 7 6 4 9 9 N 1.46500 * 109.47373 * 180.02562 * 8 7 6 10 10 C 1.34770 * 120.00256 * 180.02562 * 9 8 7 11 11 O 1.21360 * 120.00477 * 359.97438 * 10 9 8 12 12 C 1.49348 * 120.00144 * 180.02562 * 10 9 8 13 13 O 1.21382 * 119.99788 * 359.97438 * 12 10 9 14 14 N 1.34770 * 120.00144 * 179.97438 * 12 10 9 15 15 C 1.39937 * 119.99823 * 179.97438 * 14 12 10 16 16 C 1.40453 * 125.98116 * 359.97438 * 15 14 12 17 17 C 1.35215 * 107.86384 * 179.71599 * 16 15 14 18 18 N 1.34979 * 107.87970 * 0.42460 * 17 16 15 19 19 C 1.46500 * 125.97555 * 179.83561 * 18 17 16 20 20 C 1.50706 * 109.47299 * 124.71172 * 19 18 17 21 21 H 1.07998 * 119.99503 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00434 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99826 * 359.72891 * 22 20 19 24 24 Si 1.86800 * 120.00406 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72558 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72681 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72491 * 24 22 20 28 28 N 1.31273 * 125.97523 * 179.97438 * 15 14 12 29 29 H 4.40887 * 5.52145 * 180.02562 * 4 1 2 30 30 H 1.08993 * 109.47351 * 314.94464 * 3 2 1 31 31 H 1.09008 * 109.46545 * 194.94546 * 3 2 1 32 32 H 1.08998 * 109.47133 * 296.04386 * 5 4 3 33 33 H 1.08994 * 109.47036 * 56.04989 * 5 4 3 34 34 H 1.08999 * 109.46735 * 176.04677 * 5 4 3 35 35 H 1.08996 * 109.46891 * 70.00285 * 6 4 3 36 36 H 1.08996 * 109.47391 * 309.99672 * 6 4 3 37 37 H 1.09005 * 109.47089 * 60.00491 * 7 6 4 38 38 H 1.08996 * 109.47208 * 300.00088 * 7 6 4 39 39 H 1.09002 * 109.47102 * 60.00094 * 8 7 6 40 40 H 1.08996 * 109.47676 * 300.00615 * 8 7 6 41 41 H 0.97008 * 119.99919 * 0.02562 * 9 8 7 42 42 H 0.96999 * 120.00441 * 359.97438 * 14 12 10 43 43 H 1.07994 * 126.06888 * 359.97438 * 16 15 14 44 44 H 1.08004 * 126.05929 * 180.25923 * 17 16 15 45 45 H 1.09004 * 109.47078 * 4.71934 * 19 18 17 46 46 H 1.08993 * 109.47364 * 244.71705 * 19 18 17 47 47 H 0.97000 * 120.00236 * 0.27947 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1359 -0.3587 -1.3375 5 6 2.7871 -1.7464 -1.6704 6 6 4.5846 -0.1400 -1.4438 7 6 5.0160 -0.2832 -2.9048 8 6 6.5248 -0.0548 -3.0157 9 7 6.9379 -0.1912 -4.4146 10 6 8.2324 -0.0312 -4.7537 11 8 9.0559 0.2264 -3.9003 12 6 8.6534 -0.1698 -6.1799 13 8 7.8297 -0.4270 -7.0336 14 7 9.9478 -0.0093 -6.5191 15 6 10.3423 -0.1397 -7.8553 16 6 9.4995 -0.4345 -8.9395 17 6 10.2586 -0.4674 -10.0580 18 7 11.5351 -0.2136 -9.7001 19 6 12.6871 -0.1573 -10.6034 20 6 13.3838 1.1699 -10.4469 21 1 13.0063 1.8983 -9.7446 22 6 14.5029 1.4541 -11.2003 23 7 14.9656 0.5650 -12.0517 24 14 15.3668 3.0989 -11.0059 25 1 16.5381 3.1537 -11.9172 26 1 14.4247 4.1959 -11.3442 27 1 15.8244 3.2547 -9.6018 28 7 11.5649 -0.0079 -8.3148 29 1 -1.0499 0.0002 -0.0002 30 1 3.0097 -0.7251 0.7273 31 1 3.0089 0.9938 0.2651 32 1 3.2942 -2.4235 -0.9831 33 1 1.7089 -1.8808 -1.5837 34 1 3.0994 -1.9644 -2.6917 35 1 5.1089 -0.8775 -0.8362 36 1 4.8278 0.8617 -1.0897 37 1 4.4916 0.4543 -3.5125 38 1 4.7728 -1.2849 -3.2589 39 1 7.0495 -0.7919 -2.4080 40 1 6.7676 0.9471 -2.6616 41 1 6.2796 -0.3968 -5.0969 42 1 10.6060 0.1966 -5.8370 43 1 8.4336 -0.6009 -8.8894 44 1 9.9064 -0.6648 -11.0598 45 1 12.3474 -0.2701 -11.6330 46 1 13.3800 -0.9624 -10.3591 47 1 14.5172 -0.2893 -12.1526 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491209357.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:00 Heat of formation + Delta-G solvation = 51.914488 kcal Electronic energy + Delta-G solvation = -27991.527211 eV Core-core repulsion = 23791.391269 eV Total energy + Delta-G solvation = -4200.135942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.51450 -41.55927 -39.80077 -39.03871 -36.99395 -36.31969 -35.54474 -34.17685 -32.76125 -32.27434 -31.09411 -28.75966 -28.63673 -27.80326 -26.12904 -24.87130 -23.76584 -22.65343 -22.19579 -21.77956 -20.97641 -19.56906 -19.22961 -18.94732 -18.34023 -17.74748 -17.41407 -17.04992 -16.85417 -16.67931 -16.23333 -16.08301 -15.77809 -15.67119 -15.59718 -15.15340 -15.07904 -14.87476 -14.19466 -13.98163 -13.93843 -13.79882 -13.76639 -13.26707 -13.25983 -13.00343 -12.75470 -12.61746 -12.54940 -12.45259 -12.15398 -11.95448 -11.75608 -11.68142 -11.35435 -11.09482 -11.03234 -10.83161 -10.69469 -10.35778 -9.91886 -9.38054 -9.30446 -8.78628 -6.56244 0.01933 0.81198 1.05383 1.51619 1.57708 1.68958 1.69964 1.78415 1.81983 1.92602 2.21531 2.47199 2.54464 3.01243 3.06307 3.24699 3.55815 3.80670 3.93690 4.01498 4.09860 4.10083 4.36049 4.41213 4.49229 4.51022 4.59779 4.61564 4.64284 4.71279 4.74106 4.76810 4.78874 4.90977 4.99813 5.05196 5.11068 5.16556 5.27297 5.52920 5.69453 5.77677 5.89786 5.96090 6.03192 6.13226 6.25081 6.40454 6.53243 6.71492 6.77205 6.86816 7.19086 8.58638 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.030048 B = 0.001352 C = 0.001323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.606505 B =20699.949511 C =21155.410407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.212 4.212 3 C 0.159 3.841 4 N -0.552 5.552 5 C 0.020 3.980 6 C 0.059 3.941 7 C -0.120 4.120 8 C 0.119 3.881 9 N -0.681 5.681 10 C 0.524 3.476 11 O -0.536 6.536 12 C 0.517 3.483 13 O -0.507 6.507 14 N -0.601 5.601 15 C 0.260 3.740 16 C -0.284 4.284 17 C 0.060 3.940 18 N -0.339 5.339 19 C 0.258 3.742 20 C -0.624 4.624 21 H 0.045 0.955 22 C -0.016 4.016 23 N -0.923 5.923 24 Si 1.118 2.882 25 H -0.275 1.275 26 H -0.271 1.271 27 H -0.277 1.277 28 N -0.341 5.341 29 H 0.240 0.760 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.034 0.966 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.423 0.577 42 H 0.428 0.572 43 H 0.179 0.821 44 H 0.207 0.793 45 H 0.058 0.942 46 H 0.018 0.982 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.788 -3.672 22.848 36.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.213 4.213 3 C 0.033 3.967 4 N -0.276 5.276 5 C -0.128 4.128 6 C -0.069 4.069 7 C -0.158 4.158 8 C -0.004 4.004 9 N -0.334 5.334 10 C 0.303 3.697 11 O -0.413 6.413 12 C 0.298 3.702 13 O -0.380 6.380 14 N -0.251 5.251 15 C 0.005 3.995 16 C -0.315 4.315 17 C -0.089 4.089 18 N -0.121 5.121 19 C 0.139 3.861 20 C -0.662 4.662 21 H 0.063 0.937 22 C -0.216 4.216 23 N -0.559 5.559 24 Si 0.939 3.061 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.203 1.203 28 N -0.172 5.172 29 H 0.257 0.743 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.261 0.739 42 H 0.267 0.733 43 H 0.196 0.804 44 H 0.224 0.776 45 H 0.076 0.924 46 H 0.036 0.964 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -25.463 -2.258 22.223 33.872 hybrid contribution -1.598 -1.809 0.729 2.521 sum -27.060 -4.067 22.953 35.716 Atomic orbital electron populations 1.25688 0.96917 1.00330 0.98786 1.23365 0.95158 1.01143 1.01611 1.19110 0.84694 1.02898 0.90038 1.61888 1.14660 1.24174 1.26868 1.22479 1.01181 0.87314 1.01845 1.22024 0.86003 1.02823 0.96006 1.21697 0.92444 1.03974 0.97663 1.21582 0.95840 1.03212 0.79791 1.45681 1.07167 1.68469 1.12077 1.19377 0.84362 0.78942 0.87001 1.90805 1.52158 1.47611 1.50768 1.20422 0.81627 0.77840 0.90335 1.90687 1.51157 1.45251 1.50919 1.42136 1.10016 1.67400 1.05531 1.19358 0.92350 1.01691 0.86052 1.21774 1.02148 1.18410 0.89165 1.23264 0.83620 0.99928 1.02053 1.48635 1.08154 1.51488 1.03820 1.19464 0.81893 0.97725 0.86999 1.22304 1.15689 1.01495 1.26753 0.93674 1.27219 0.95285 1.07241 0.91861 1.70949 1.41788 1.07843 1.35288 0.82898 0.75754 0.70577 0.76866 1.19936 1.19577 1.20263 1.77341 1.19050 1.28774 0.92052 0.74313 0.91499 0.87367 0.94790 0.92193 0.90179 0.93180 0.89136 0.89984 0.90198 0.90420 0.90341 0.73928 0.73344 0.80383 0.77590 0.92396 0.96449 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.16 19.25 74.32 1.43 -0.73 16 2 C -0.21 -2.69 12.38 31.12 0.39 -2.31 16 3 C 0.16 1.44 5.46 84.50 0.46 1.90 16 4 N -0.55 -5.28 4.74 -933.64 -4.43 -9.70 16 5 C 0.02 0.18 9.14 127.69 1.17 1.34 16 6 C 0.06 0.38 4.96 86.31 0.43 0.81 16 7 C -0.12 -0.80 5.25 30.60 0.16 -0.63 16 8 C 0.12 1.20 5.67 86.38 0.49 1.69 16 9 N -0.68 -9.95 5.55 -464.53 -2.58 -12.52 16 10 C 0.52 11.63 7.89 87.24 0.69 12.31 16 11 O -0.54 -14.26 16.48 -3.28 -0.05 -14.31 16 12 C 0.52 14.03 7.85 87.24 0.69 14.72 16 13 O -0.51 -14.60 13.60 -3.35 -0.05 -14.64 16 14 N -0.60 -19.12 5.43 -308.90 -1.68 -20.80 16 15 C 0.26 10.24 8.10 133.40 1.08 11.32 16 16 C -0.28 -10.36 9.60 22.11 0.21 -10.15 16 17 C 0.06 2.22 11.43 83.51 0.95 3.17 16 18 N -0.34 -15.63 3.67 -351.84 -1.29 -16.92 16 19 C 0.26 13.11 5.57 85.64 0.48 13.59 16 20 C -0.62 -35.42 9.24 25.60 0.24 -35.18 16 21 H 0.04 2.68 7.81 -2.91 -0.02 2.66 16 22 C -0.02 -0.90 5.46 84.65 0.46 -0.44 16 23 N -0.92 -53.66 13.65 21.45 0.29 -53.36 16 24 Si 1.12 49.74 29.90 68.60 2.05 51.79 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 28 N -0.34 -15.95 12.42 -54.54 -0.68 -16.63 16 29 H 0.24 0.96 7.80 -4.42 -0.03 0.93 16 30 H 0.07 0.48 8.12 -2.39 -0.02 0.46 16 31 H 0.11 0.72 7.93 -2.38 -0.02 0.70 16 32 H 0.03 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.06 0.64 7.17 -2.39 -0.02 0.63 16 34 H 0.08 0.61 6.47 -2.39 -0.02 0.59 16 35 H 0.05 0.26 8.12 -2.39 -0.02 0.25 16 36 H 0.09 0.46 7.93 -2.39 -0.02 0.44 16 37 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.08 0.48 6.55 -2.39 -0.02 0.46 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.42 5.06 7.94 -92.70 -0.74 4.32 16 42 H 0.43 12.70 8.29 -92.71 -0.77 11.93 16 43 H 0.18 5.88 5.91 -2.91 -0.02 5.86 16 44 H 0.21 5.83 8.06 -2.91 -0.02 5.81 16 45 H 0.06 2.78 7.94 -2.39 -0.02 2.77 16 46 H 0.02 0.94 8.00 -2.39 -0.02 0.92 16 47 H 0.26 14.98 7.22 -92.71 -0.67 14.31 16 Total: -1.00 -73.67 407.87 0.52 -73.14 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -0.39 Total: 22.54 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 9.32 Total: 11.42 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -10.36 Total: -129.93 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.10 Total: -28.96 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 2.05 Total: 51.79 kcal Total: -73.67 0.52 -73.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491209357.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.059 kcal (2) G-P(sol) polarization free energy of solvation -73.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds